RNA–Protein interactions for RNA: ENST00000479530.5

PDZRN3-208, Transcript of PDZ domain containing ring finger 3, humanhuman

TSL 2 BASIC

Gene PDZRN3, Length 2,778 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDZRN3-208ENST00000479530 NISCHQ9Y2I1 1504 aa27.29■■□□□ 1.96
PDZRN3-208ENST00000479530 SHROOM4Q9ULL8 1493 aa23.52■■□□□ 1.36
PDZRN3-208ENST00000479530 ZCCHC6Q5VYS8 1495 aaKnown RBP23.04■■□□□ 1.28
PDZRN3-208ENST00000479530 SUPT5HO00267 1087 aaKnown RBP23.03■■□□□ 1.28
PDZRN3-208ENST00000479530 CCDC180Q9P1Z9 1646 aa23■■□□□ 1.27
PDZRN3-208ENST00000479530 DCAF8L2P0C7V8 631 aa22.95■■□□□ 1.27
PDZRN3-208ENST00000479530 MYO15BQ96JP2 1530 aa22.31■■□□□ 1.16
PDZRN3-208ENST00000479530 CHIC1Q5VXU3 224 aa22.3■■□□□ 1.16
PDZRN3-208ENST00000479530 HRCP23327 699 aa22.29■■□□□ 1.16
PDZRN3-208ENST00000479530 DCAF1Q9Y4B6 1507 aa22.24■■□□□ 1.15
PDZRN3-208ENST00000479530 PCGF6Q9BYE7 350 aa22.07■■□□□ 1.12
PDZRN3-208ENST00000479530 PPARGC1BQ86YN6 1023 aaKnown RBP21.96■■□□□ 1.11
PDZRN3-208ENST00000479530 SCRIBQ14160 1630 aa21.81■■□□□ 1.08
PDZRN3-208ENST00000479530 LOC105371045A0A1W2PR82 267 aa21.77■■□□□ 1.08
PDZRN3-208ENST00000479530 ABCC9O60706 1549 aa21.7■■□□□ 1.06
PDZRN3-208ENST00000479530 RSF1Q96T23 1441 aaPredicted RBP21.67■■□□□ 1.06
PDZRN3-208ENST00000479530 CECR2Q9BXF3 1484 aa21.45■■□□□ 1.02
PDZRN3-208ENST00000479530 RB1CC1Q8TDY2 1594 aa21.39■■□□□ 1.02
PDZRN3-208ENST00000479530 TRIM26Q12899 539 aaPredicted RBP21.38■■□□□ 1.01
PDZRN3-208ENST00000479530 NACADO15069 1562 aa21.37■■□□□ 1.01
PDZRN3-208ENST00000479530 TRIM41Q8WV44 630 aa21.35■■□□□ 1.01
PDZRN3-208ENST00000479530 FAM9AQ8IZU1 332 aaPredicted RBP21.34■■□□□ 1.01
PDZRN3-208ENST00000479530 MROH2BQ7Z745 1585 aa21.3■■□□□ 1
PDZRN3-208ENST00000479530 EHMT2Q96KQ7 1210 aa21.27■■□□□ 1
PDZRN3-208ENST00000479530 WIZO95785 1651 aa21.15■□□□□ 0.98
PDZRN3-208ENST00000479530 ZEB1P37275 1124 aaPredicted RBP20.99■□□□□ 0.95
PDZRN3-208ENST00000479530 PELP1Q8IZL8 1130 aaKnown RBP20.94■□□□□ 0.94
PDZRN3-208ENST00000479530 SCAF1Q9H7N4 1312 aaKnown RBP20.93■□□□□ 0.94
PDZRN3-208ENST00000479530 PABPN1Q86U42 306 aaKnown RBP eCLIP20.89■□□□□ 0.93
PDZRN3-208ENST00000479530 BAZ1AQ9NRL2 1556 aaPredicted RBP20.89■□□□□ 0.93
PDZRN3-208ENST00000479530 CCDC88BA6NC98 1476 aa20.76■□□□□ 0.91
PDZRN3-208ENST00000479530 SMARCA4P51532 1647 aa20.75■□□□□ 0.91
PDZRN3-208ENST00000479530 EIF4G1Q04637 1599 aaKnown RBP20.75■□□□□ 0.91
PDZRN3-208ENST00000479530 UNC13AQ9UPW8 1703 aa20.75■□□□□ 0.91
PDZRN3-208ENST00000479530 ABCC8Q09428 1581 aa20.72■□□□□ 0.91
PDZRN3-208ENST00000479530 TOP2AP11388 1531 aaKnown RBP20.71■□□□□ 0.91
PDZRN3-208ENST00000479530 SMARCA2P51531 1590 aa20.65■□□□□ 0.9
PDZRN3-208ENST00000479530 BICRAQ9NZM4 1560 aa20.6■□□□□ 0.89
PDZRN3-208ENST00000479530 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP20.6■□□□□ 0.89
PDZRN3-208ENST00000479530 SOGA1O94964 1423 aa20.57■□□□□ 0.88
PDZRN3-208ENST00000479530 TTBK1Q5TCY1 1321 aaPredicted RBP20.52■□□□□ 0.88
PDZRN3-208ENST00000479530 RUSC2Q8N2Y8 1516 aa20.51■□□□□ 0.87
PDZRN3-208ENST00000479530 NEUROD1Q13562 356 aa20.5■□□□□ 0.87
PDZRN3-208ENST00000479530 CCER1Q8TC90 406 aaPredicted RBP20.48■□□□□ 0.87
PDZRN3-208ENST00000479530 ACIN1Q9UKV3 1341 aaKnown RBP20.47■□□□□ 0.87
PDZRN3-208ENST00000479530 CSRNP3Q8WYN3 585 aa20.4■□□□□ 0.86
PDZRN3-208ENST00000479530 UBTFP17480 764 aaKnown RBP20.37■□□□□ 0.85
PDZRN3-208ENST00000479530 CEP162Q5TB80 1403 aa20.36■□□□□ 0.85
PDZRN3-208ENST00000479530 DIEXFQ68CQ4 756 aaKnown RBP20.34■□□□□ 0.85
PDZRN3-208ENST00000479530 MYT1Q01538 1121 aa20.32■□□□□ 0.84
PDZRN3-208ENST00000479530 GTF3C3Q9Y5Q9 886 aa20.32■□□□□ 0.84
PDZRN3-208ENST00000479530 ATAD2BQ9ULI0 1458 aa20.31■□□□□ 0.84
PDZRN3-208ENST00000479530 WRNQ14191 1432 aaPredicted RBP eCLIP20.31■□□□□ 0.84
PDZRN3-208ENST00000479530 TNIKQ9UKE5 1360 aa20.29■□□□□ 0.84
PDZRN3-208ENST00000479530 PEG3Q9GZU2 1588 aa20.28■□□□□ 0.84
PDZRN3-208ENST00000479530 BAZ1BQ9UIG0 1483 aaKnown RBP20.22■□□□□ 0.83
PDZRN3-208ENST00000479530 SYNJ1O43426 1573 aa20.22■□□□□ 0.83
PDZRN3-208ENST00000479530 EEA1Q15075 1411 aa20.19■□□□□ 0.82
PDZRN3-208ENST00000479530 CENPBP07199 599 aaPredicted RBP20.18■□□□□ 0.82
PDZRN3-208ENST00000479530 RANGAP1P46060 587 aaPredicted RBP20.15■□□□□ 0.82
PDZRN3-208ENST00000479530 GOLGA3Q08378 1498 aa20.14■□□□□ 0.81
PDZRN3-208ENST00000479530 CEP164Q9UPV0 1460 aa20.02■□□□□ 0.8
PDZRN3-208ENST00000479530 RAPGEF2Q9Y4G8 1499 aa20.02■□□□□ 0.8
PDZRN3-208ENST00000479530 ZNF316A6NFI3 1004 aaPredicted RBP20.01■□□□□ 0.79
PDZRN3-208ENST00000479530 YTHDC1Q96MU7 727 aaKnown RBP20.01■□□□□ 0.79
PDZRN3-208ENST00000479530 CLIP1P30622 1438 aa19.98■□□□□ 0.79
PDZRN3-208ENST00000479530 HNRNPUL2Q1KMD3 747 aaKnown RBP19.95■□□□□ 0.78
PDZRN3-208ENST00000479530 KIF21BO75037 1637 aa19.92■□□□□ 0.78
PDZRN3-208ENST00000479530 MIER1Q8N108 512 aa19.9■□□□□ 0.78
PDZRN3-208ENST00000479530 NCAPD3P42695 1498 aa19.88■□□□□ 0.77
PDZRN3-208ENST00000479530 TOP2BQ02880 1626 aa19.87■□□□□ 0.77
PDZRN3-208ENST00000479530 VPS8Q8N3P4 1428 aa19.85■□□□□ 0.77
PDZRN3-208ENST00000479530 CUX1P39880 1505 aa19.81■□□□□ 0.76
PDZRN3-208ENST00000479530 APLP2Q06481 763 aa19.79■□□□□ 0.76
PDZRN3-208ENST00000479530 HMGXB3Q12766 1538 aa19.77■□□□□ 0.76
PDZRN3-208ENST00000479530 BIVM-ERCC5R4GMW8 1640 aa19.75■□□□□ 0.75
PDZRN3-208ENST00000479530 PRXQ9BXM0 1461 aa19.75■□□□□ 0.75
PDZRN3-208ENST00000479530 KANK4Q5T7N3 995 aaPredicted RBP19.72■□□□□ 0.75
PDZRN3-208ENST00000479530 CFTRP13569 1480 aa19.72■□□□□ 0.75
PDZRN3-208ENST00000479530 ARAP1Q96P48 1450 aa19.67■□□□□ 0.74
PDZRN3-208ENST00000479530 KIF27Q86VH2 1401 aa19.65■□□□□ 0.74
PDZRN3-208ENST00000479530 ERICH3Q5RHP9 1530 aa19.61■□□□□ 0.73
PDZRN3-208ENST00000479530 IGF1RP08069 1367 aa19.56■□□□□ 0.72
PDZRN3-208ENST00000479530 CADPSQ9ULU8 1353 aa19.56■□□□□ 0.72
PDZRN3-208ENST00000479530 CUX2O14529 1486 aa19.54■□□□□ 0.72
PDZRN3-208ENST00000479530 ARHGAP35Q9NRY4 1499 aa19.52■□□□□ 0.72
PDZRN3-208ENST00000479530 ITGAEP38570 1179 aa19.48■□□□□ 0.71
PDZRN3-208ENST00000479530 FGD5Q6ZNL6 1462 aa19.45■□□□□ 0.7
PDZRN3-208ENST00000479530 P3H3Q8IVL6 736 aa19.44■□□□□ 0.7
PDZRN3-208ENST00000479530 CARMIL1Q5VZK9 1371 aa19.44■□□□□ 0.7
PDZRN3-208ENST00000479530 DHX57Q6P158 1386 aaKnown RBP19.43■□□□□ 0.7
PDZRN3-208ENST00000479530 SUPT16HQ9Y5B9 1047 aaKnown RBP19.43■□□□□ 0.7
PDZRN3-208ENST00000479530 CC2D2AQ9P2K1 1620 aa19.42■□□□□ 0.7
PDZRN3-208ENST00000479530 RRBP1Q9P2E9 1410 aaKnown RBP19.37■□□□□ 0.69
PDZRN3-208ENST00000479530 RAD54L2Q9Y4B4 1467 aa19.36■□□□□ 0.69
PDZRN3-208ENST00000479530 NESP48681 1621 aa19.36■□□□□ 0.69
PDZRN3-208ENST00000479530 FANCD2Q9BXW9 1451 aa19.35■□□□□ 0.69
PDZRN3-208ENST00000479530 CCNB3Q8WWL7 1395 aa19.35■□□□□ 0.69
PDZRN3-208ENST00000479530 DNAJC5BQ9UF47 199 aa19.34■□□□□ 0.69
PDZRN3-208ENST00000479530 ATP1B4Q9UN42 357 aaPredicted RBP19.33■□□□□ 0.69
Retrieved 100 of 20,778 RNA–protein pairs in 32.7 ms