Protein–RNA interactions for Protein: P06340

HLA-DOA, HLA class II histocompatibility antigen, DO alpha chain, humanhuman

Predictions only

Length 250 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DOAP06340 B3GNT7-201ENST00000287590 3706 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
HLA-DOAP06340 PRAME-205ENST00000405655 2179 ntAPPRIS P2 TSL 1 (best) BASIC16.1■□□□□ 0.17
HLA-DOAP06340 ITPKB-201ENST00000272117 5822 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
HLA-DOAP06340 AC239799.1-201ENST00000612520 3411 ntAPPRIS P1 TSL 5 BASIC16.1■□□□□ 0.17
HLA-DOAP06340 RIN2-202ENST00000440354 1837 ntAPPRIS ALT2 TSL 1 (best) BASIC16.1■□□□□ 0.17
HLA-DOAP06340 ZNRF4-201ENST00000222033 1426 ntAPPRIS P1 BASIC16.1■□□□□ 0.17
HLA-DOAP06340 MCC-202ENST00000408903 3476 ntAPPRIS P1 TSL 2 BASIC16.1■□□□□ 0.17
HLA-DOAP06340 NUCB1-201ENST00000405315 2668 ntAPPRIS P2 TSL 1 (best) BASIC16.1■□□□□ 0.17
HLA-DOAP06340 JAKMIP3-201ENST00000298622 6626 ntAPPRIS P1 TSL 5 BASIC16.09■□□□□ 0.17
HLA-DOAP06340 TBC1D3P2-201ENST00000339120 1513 ntTSL 2 BASIC16.09■□□□□ 0.17
HLA-DOAP06340 OBSL1-202ENST00000373873 3297 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
HLA-DOAP06340 RCAN2-203ENST00000371374 3327 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
HLA-DOAP06340 TMEM87A-201ENST00000307216 1598 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
HLA-DOAP06340 HDAC2-206ENST00000519108 2000 ntTSL 2 BASIC16.09■□□□□ 0.17
HLA-DOAP06340 GLB1L2-205ENST00000535456 3365 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
HLA-DOAP06340 SLIT1-201ENST00000266058 7925 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
HLA-DOAP06340 ACIN1-201ENST00000262710 4935 ntAPPRIS P3 TSL 1 (best) BASIC16.09■□□□□ 0.17
HLA-DOAP06340 ASH2L-201ENST00000343823 3090 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
HLA-DOAP06340 TMCO3-202ENST00000434316 3050 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
HLA-DOAP06340 AC005523.2-201ENST00000601192 3568 ntTSL 4 BASIC16.09■□□□□ 0.17
HLA-DOAP06340 DUOXA1-205ENST00000558422 1678 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
HLA-DOAP06340 RIMS1-214ENST00000518273 4116 ntTSL 5 BASIC16.09■□□□□ 0.17
HLA-DOAP06340 TYK2-210ENST00000529370 3176 ntTSL 2 BASIC16.09■□□□□ 0.17
HLA-DOAP06340 WBP2-215ENST00000591399 2225 ntAPPRIS P2 TSL 5 BASIC16.09■□□□□ 0.17
HLA-DOAP06340 RAB43-202ENST00000393304 4230 ntAPPRIS P1 TSL 4 BASIC16.09■□□□□ 0.17
HLA-DOAP06340 AC073869.1-201ENST00000415574 2762 ntBASIC16.09■□□□□ 0.17
HLA-DOAP06340 CLASRP-204ENST00000544944 2769 ntAPPRIS ALT2 TSL 2 BASIC16.09■□□□□ 0.17
HLA-DOAP06340 SAP18-201ENST00000382533 2298 ntAPPRIS P2 TSL 1 (best) BASIC16.09■□□□□ 0.17
HLA-DOAP06340 CR383656.2-201ENST00000548656 2254 ntBASIC16.09■□□□□ 0.17
HLA-DOAP06340 VPS28-201ENST00000292510 979 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
HLA-DOAP06340 VPS28-202ENST00000377348 1097 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
HLA-DOAP06340 OR10N1P-201ENST00000392758 869 ntBASIC16.09■□□□□ 0.17
HLA-DOAP06340 MPV17-209ENST00000405983 859 ntTSL 5 BASIC16.09■□□□□ 0.17
HLA-DOAP06340 LINC00313-207ENST00000451543 413 ntTSL 3 BASIC16.09■□□□□ 0.17
HLA-DOAP06340 VPS28-210ENST00000529182 1010 ntTSL 2 BASIC16.09■□□□□ 0.17
HLA-DOAP06340 AC145422.1-201ENST00000541574 544 ntTSL 3 BASIC16.09■□□□□ 0.17
HLA-DOAP06340 LINC01996-201ENST00000573270 1273 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
HLA-DOAP06340 LINC01836-201ENST00000586061 829 ntTSL 3 BASIC16.09■□□□□ 0.17
HLA-DOAP06340 KF455155.1-201ENST00000604493 303 ntBASIC16.09■□□□□ 0.17
HLA-DOAP06340 LINC01669-201ENST00000623161 413 ntTSL 3 BASIC16.09■□□□□ 0.17
HLA-DOAP06340 SBF1-202ENST00000380817 8008 ntAPPRIS P2 TSL 1 (best) BASIC16.09■□□□□ 0.17
HLA-DOAP06340 ADORA1-201ENST00000309502 2896 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
HLA-DOAP06340 PAPSS2-201ENST00000361175 3949 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
HLA-DOAP06340 FAHD2B-201ENST00000272610 1305 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
HLA-DOAP06340 PSTPIP1-207ENST00000559295 1349 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
HLA-DOAP06340 AC007491.1-201ENST00000637560 1306 ntTSL 5 BASIC16.09■□□□□ 0.17
HLA-DOAP06340 AL358781.1-202ENST00000321081 1360 ntBASIC16.09■□□□□ 0.17
HLA-DOAP06340 TCN2-202ENST00000405742 1936 ntAPPRIS ALT2 TSL 5 BASIC16.09■□□□□ 0.17
HLA-DOAP06340 PDHB-210ENST00000485460 1397 ntTSL 2 BASIC16.09■□□□□ 0.17
HLA-DOAP06340 DMTN-205ENST00000432128 2508 ntTSL 5 BASIC16.09■□□□□ 0.17
HLA-DOAP06340 KCNT1-209ENST00000490355 3708 ntAPPRIS ALT2 TSL 5 BASIC16.09■□□□□ 0.17
HLA-DOAP06340 RAPGEF1-202ENST00000372190 6045 ntAPPRIS P4 TSL 1 (best) BASIC16.09■□□□□ 0.17
HLA-DOAP06340 MAGI1-218ENST00000621418 6225 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
HLA-DOAP06340 SOX30-202ENST00000311371 2716 ntAPPRIS ALT2 TSL 1 (best) BASIC16.09■□□□□ 0.17
HLA-DOAP06340 PPHLN1-223ENST00000610488 1521 ntTSL 5 BASIC16.09■□□□□ 0.17
HLA-DOAP06340 RNF26-201ENST00000311413 2787 ntAPPRIS P1 BASIC16.09■□□□□ 0.17
HLA-DOAP06340 CORO7-201ENST00000251166 3540 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.17
HLA-DOAP06340 FGD5-AS1-202ENST00000424349 3792 ntTSL 1 (best) BASIC16.08■□□□□ 0.17
HLA-DOAP06340 KCTD3-201ENST00000259154 3931 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.17
HLA-DOAP06340 GPAT3-201ENST00000264409 2625 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.17
HLA-DOAP06340 MAPRE2-201ENST00000300249 4265 ntAPPRIS P3 TSL 1 (best) BASIC16.08■□□□□ 0.16
HLA-DOAP06340 BCAR1-205ENST00000420641 2725 ntAPPRIS ALT2 TSL 2 BASIC16.08■□□□□ 0.16
HLA-DOAP06340 RAB11FIP1-206ENST00000524118 1959 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
HLA-DOAP06340 LIMD1-202ENST00000440097 2773 ntTSL 5 BASIC16.08■□□□□ 0.16
HLA-DOAP06340 MAP2K3-214ENST00000613338 2029 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
HLA-DOAP06340 SSTR5-AS1-204ENST00000569832 2864 ntTSL 2 BASIC16.08■□□□□ 0.16
HLA-DOAP06340 HDAC11-201ENST00000295757 2960 ntAPPRIS P3 TSL 1 (best) BASIC16.08■□□□□ 0.16
HLA-DOAP06340 TNNT2-207ENST00000367322 1132 ntAPPRIS ALT2 TSL 1 (best) BASIC16.08■□□□□ 0.16
HLA-DOAP06340 AL035413.1-201ENST00000437898 507 ntTSL 2 BASIC16.08■□□□□ 0.16
HLA-DOAP06340 LINC01184-204ENST00000501702 2977 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
HLA-DOAP06340 UBE2D3-221ENST00000507845 577 ntTSL 4 BASIC16.08■□□□□ 0.16
HLA-DOAP06340 AC105219.2-201ENST00000527908 299 ntTSL 4 BASIC16.08■□□□□ 0.16
HLA-DOAP06340 AC015712.5-201ENST00000558568 564 ntTSL 2 BASIC16.08■□□□□ 0.16
HLA-DOAP06340 AC004528.1-201ENST00000588380 641 ntTSL 5 BASIC16.08■□□□□ 0.16
HLA-DOAP06340 LINC00969-321ENST00000629990 806 ntTSL 5 BASIC16.08■□□□□ 0.16
HLA-DOAP06340 DAO-208ENST00000551281 1345 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
HLA-DOAP06340 ARHGEF1-201ENST00000337665 3171 ntAPPRIS P4 TSL 1 (best) BASIC16.08■□□□□ 0.16
HLA-DOAP06340 SMOC2-201ENST00000354536 3150 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
HLA-DOAP06340 CYB561-219ENST00000584031 3200 ntTSL 2 BASIC16.08■□□□□ 0.16
HLA-DOAP06340 GAL3ST4-202ENST00000411994 1404 ntTSL 2 BASIC16.08■□□□□ 0.16
HLA-DOAP06340 PRPF38A-201ENST00000257181 5274 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
HLA-DOAP06340 OR2V1-204ENST00000641551 2423 ntAPPRIS P1 BASIC16.08■□□□□ 0.16
HLA-DOAP06340 ABCF3-201ENST00000292808 2453 ntAPPRIS ALT1 TSL 2 BASIC16.08■□□□□ 0.16
HLA-DOAP06340 AFDN-211ENST00000447894 5475 ntAPPRIS P1 TSL 5 BASIC16.08■□□□□ 0.16
HLA-DOAP06340 TMEM2-202ENST00000377044 6523 ntAPPRIS P3 TSL 1 (best) BASIC16.08■□□□□ 0.16
HLA-DOAP06340 UBE2L5P-202ENST00000635918 1513 ntAPPRIS P1 TSL 5 BASIC16.08■□□□□ 0.16
HLA-DOAP06340 CLEC10A-202ENST00000416562 1646 ntAPPRIS ALT2 TSL 5 BASIC16.08■□□□□ 0.16
HLA-DOAP06340 PPP2R1A-201ENST00000322088 5380 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
HLA-DOAP06340 SLC35A2-204ENST00000376521 3047 ntAPPRIS ALT1 TSL 1 (best) BASIC16.08■□□□□ 0.16
HLA-DOAP06340 PDGFRB-201ENST00000261799 5717 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
HLA-DOAP06340 AC026748.1-201ENST00000624349 3251 ntBASIC16.07■□□□□ 0.16
HLA-DOAP06340 MCM3AP-AS1-203ENST00000421927 2280 ntTSL 2 BASIC16.07■□□□□ 0.16
HLA-DOAP06340 IKZF1-203ENST00000346667 5376 ntTSL 5 BASIC16.07■□□□□ 0.16
HLA-DOAP06340 ARHGAP21-217ENST00000612832 5514 ntTSL 5 BASIC16.07■□□□□ 0.16
HLA-DOAP06340 SEMA6D-208ENST00000558014 6028 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
HLA-DOAP06340 SH3KBP1-205ENST00000397821 4731 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
HLA-DOAP06340 RMDN3-201ENST00000260385 3138 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
HLA-DOAP06340 MN1-201ENST00000302326 7556 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
HLA-DOAP06340 CUEDC1-206ENST00000577830 3621 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
HLA-DOAP06340 HIST1H2AE-201ENST00000303910 509 ntAPPRIS P1 BASIC16.07■□□□□ 0.16
Retrieved 100 of 98,524 protein–RNA pairs in 55.6 ms