Protein–RNA interactions for Protein: Q9H9S3

SEC61A2, Protein transport protein Sec61 subunit alpha isoform 2, humanhuman

Predictions only

Length 476 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SEC61A2Q9H9S3 C21orf2-203ENST00000397956 1634 ntAPPRIS ALT2 TSL 1 (best) BASIC19.94■□□□□ 0.78
SEC61A2Q9H9S3 KCTD8-201ENST00000360029 2587 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
SEC61A2Q9H9S3 PKD1P6-201ENST00000343738 4769 ntBASIC19.94■□□□□ 0.78
SEC61A2Q9H9S3 ASAP2-202ENST00000315273 5582 ntAPPRIS ALT2 TSL 1 (best) BASIC19.94■□□□□ 0.78
SEC61A2Q9H9S3 DTNB-211ENST00000407661 2420 ntAPPRIS ALT1 TSL 1 (best) BASIC19.94■□□□□ 0.78
SEC61A2Q9H9S3 CNR1-203ENST00000369501 6031 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
SEC61A2Q9H9S3 DRAP1-201ENST00000312515 989 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
SEC61A2Q9H9S3 TMEM147-203ENST00000392205 767 ntTSL 2 BASIC19.94■□□□□ 0.78
SEC61A2Q9H9S3 EXOG-217ENST00000630638 197 ntTSL 5 BASIC19.94■□□□□ 0.78
SEC61A2Q9H9S3 EPS8L1-205ENST00000586329 2130 ntTSL 5 BASIC19.94■□□□□ 0.78
SEC61A2Q9H9S3 DNAJC25-GNG10-201ENST00000374294 1448 ntAPPRIS P1 TSL 2 BASIC19.93■□□□□ 0.78
SEC61A2Q9H9S3 SYT7-201ENST00000263846 4854 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
SEC61A2Q9H9S3 FBXW7-202ENST00000281708 4976 ntAPPRIS P4 TSL 1 (best) BASIC19.93■□□□□ 0.78
SEC61A2Q9H9S3 INPPL1-201ENST00000298229 4733 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
SEC61A2Q9H9S3 C7orf26-202ENST00000359073 1762 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
SEC61A2Q9H9S3 IGF2-AS-201ENST00000381361 2063 ntTSL 2 BASIC19.93■□□□□ 0.78
SEC61A2Q9H9S3 RIOX1-201ENST00000304061 2429 ntAPPRIS P1 BASIC19.93■□□□□ 0.78
SEC61A2Q9H9S3 SPG21-202ENST00000416889 1533 ntTSL 2 BASIC19.93■□□□□ 0.78
SEC61A2Q9H9S3 MTCL1-201ENST00000306329 5718 ntAPPRIS ALT2 TSL 5 BASIC19.93■□□□□ 0.78
SEC61A2Q9H9S3 AC092343.1-201ENST00000500224 729 ntTSL 3 BASIC19.93■□□□□ 0.78
SEC61A2Q9H9S3 TSPAN17-204ENST00000503045 1019 ntTSL 5 BASIC19.93■□□□□ 0.78
SEC61A2Q9H9S3 MIR6722-201ENST00000617286 78 ntBASIC19.93■□□□□ 0.78
SEC61A2Q9H9S3 AC005703.6-201ENST00000623265 1329 ntBASIC19.93■□□□□ 0.78
SEC61A2Q9H9S3 UPF1-207ENST00000599848 5311 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
SEC61A2Q9H9S3 ALG1L9P-201ENST00000508969 2165 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
SEC61A2Q9H9S3 PITX2-209ENST00000557119 1889 ntTSL 2 BASIC19.92■□□□□ 0.78
SEC61A2Q9H9S3 HOXD1-201ENST00000331462 1975 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
SEC61A2Q9H9S3 SRI-201ENST00000265729 2010 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
SEC61A2Q9H9S3 SETD9-201ENST00000285947 1619 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
SEC61A2Q9H9S3 SAMD8-202ENST00000372690 1654 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
SEC61A2Q9H9S3 SYNDIG1-201ENST00000376862 2522 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
SEC61A2Q9H9S3 MT2A-201ENST00000245185 786 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
SEC61A2Q9H9S3 UBFD1-208ENST00000567264 642 ntAPPRIS ALT2 TSL 5 BASIC19.92■□□□□ 0.78
SEC61A2Q9H9S3 ROGDI-201ENST00000322048 1735 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
SEC61A2Q9H9S3 DENND1B-204ENST00000367396 2177 ntAPPRIS P3 TSL 1 (best) BASIC19.92■□□□□ 0.78
SEC61A2Q9H9S3 SLAIN1-213ENST00000466548 2637 ntAPPRIS ALT2 TSL 5 BASIC19.92■□□□□ 0.78
SEC61A2Q9H9S3 TCF3-203ENST00000395423 2779 ntTSL 5 BASIC19.92■□□□□ 0.78
SEC61A2Q9H9S3 SRSF11-203ENST00000370951 2385 ntAPPRIS ALT2 TSL 1 (best) BASIC19.92■□□□□ 0.78
SEC61A2Q9H9S3 NKIRAS2-206ENST00000393885 1909 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
SEC61A2Q9H9S3 GGTA1P-203ENST00000481799 1487 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
SEC61A2Q9H9S3 CNPY3-201ENST00000372836 1704 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
SEC61A2Q9H9S3 IMPDH1-210ENST00000480861 1765 ntAPPRIS P2 TSL 2 BASIC19.91■□□□□ 0.78
SEC61A2Q9H9S3 USP36-218ENST00000590546 1771 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
SEC61A2Q9H9S3 IKZF1-207ENST00000413698 1808 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
SEC61A2Q9H9S3 TRIM7-202ENST00000334421 1228 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
SEC61A2Q9H9S3 TMEM218-215ENST00000532407 1103 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
SEC61A2Q9H9S3 MIR6724-1-201ENST00000616420 92 ntBASIC19.91■□□□□ 0.78
SEC61A2Q9H9S3 MIR6724-2-201ENST00000616483 92 ntBASIC19.91■□□□□ 0.78
SEC61A2Q9H9S3 MIR6724-4-201ENST00000617390 92 ntBASIC19.91■□□□□ 0.78
SEC61A2Q9H9S3 MIR6724-3-201ENST00000622482 92 ntBASIC19.91■□□□□ 0.78
SEC61A2Q9H9S3 ARF1-213ENST00000540651 1972 ntAPPRIS P1 TSL 2 BASIC19.91■□□□□ 0.78
SEC61A2Q9H9S3 ADRM1-205ENST00000620230 1361 ntTSL 5 BASIC19.91■□□□□ 0.78
SEC61A2Q9H9S3 AC064853.3-201ENST00000641801 1658 ntAPPRIS P1 BASIC19.91■□□□□ 0.78
SEC61A2Q9H9S3 CCR10-203ENST00000591765 1942 ntTSL 3 BASIC19.9■□□□□ 0.78
SEC61A2Q9H9S3 RYK-209ENST00000623711 2934 ntAPPRIS ALT2 TSL 1 (best) BASIC19.9■□□□□ 0.78
SEC61A2Q9H9S3 GPR161-203ENST00000367836 1983 ntTSL 2 BASIC19.9■□□□□ 0.78
SEC61A2Q9H9S3 DTNB-201ENST00000288642 2464 ntAPPRIS ALT2 TSL 2 BASIC19.9■□□□□ 0.78
SEC61A2Q9H9S3 DTNB-208ENST00000406818 2474 ntAPPRIS P4 TSL 1 (best) BASIC19.9■□□□□ 0.78
SEC61A2Q9H9S3 SLC25A39-203ENST00000537904 1274 ntTSL 2 BASIC19.9■□□□□ 0.78
SEC61A2Q9H9S3 TRAF7-203ENST00000565383 799 ntTSL 5 BASIC19.9■□□□□ 0.78
SEC61A2Q9H9S3 AL117332.1-201ENST00000622628 974 ntBASIC19.9■□□□□ 0.78
SEC61A2Q9H9S3 UROS-204ENST00000368797 1313 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
SEC61A2Q9H9S3 RPP38-207ENST00000616640 1537 ntAPPRIS P1 TSL 2 BASIC19.9■□□□□ 0.78
SEC61A2Q9H9S3 DISC1-220ENST00000602873 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC19.9■□□□□ 0.78
SEC61A2Q9H9S3 HNRNPD-202ENST00000352301 1667 ntAPPRIS ALT1 TSL 1 (best) BASIC19.9■□□□□ 0.78
SEC61A2Q9H9S3 DIXDC1-205ENST00000529225 1945 ntTSL 5 BASIC19.9■□□□□ 0.78
SEC61A2Q9H9S3 AC068473.5-201ENST00000616428 2072 ntBASIC19.9■□□□□ 0.78
SEC61A2Q9H9S3 LHX2-201ENST00000373615 2554 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
SEC61A2Q9H9S3 SCRT2-201ENST00000246104 3577 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
SEC61A2Q9H9S3 AC098864.1-205ENST00000315302 2260 ntTSL 2 BASIC19.89■□□□□ 0.77
SEC61A2Q9H9S3 TTC7A-201ENST00000319190 5157 ntAPPRIS P1 TSL 2 BASIC19.89■□□□□ 0.77
SEC61A2Q9H9S3 FRS3-202ENST00000373018 2174 ntAPPRIS P1 TSL 3 BASIC19.89■□□□□ 0.77
SEC61A2Q9H9S3 AC112229.4-201ENST00000488671 1528 ntTSL 2 BASIC19.89■□□□□ 0.77
SEC61A2Q9H9S3 AC073934.1-201ENST00000490314 495 ntTSL 4 BASIC19.89■□□□□ 0.77
SEC61A2Q9H9S3 NKX6-3-202ENST00000524115 1683 ntTSL 2 BASIC19.89■□□□□ 0.77
SEC61A2Q9H9S3 SPRED3-204ENST00000587013 1539 ntTSL 5 BASIC19.89■□□□□ 0.77
SEC61A2Q9H9S3 AC079630.1-202ENST00000618127 1840 ntBASIC19.89■□□□□ 0.77
SEC61A2Q9H9S3 AL591684.2-201ENST00000605970 1594 ntTSL 5 BASIC19.88■□□□□ 0.77
SEC61A2Q9H9S3 EEF1D-203ENST00000419152 1452 ntAPPRIS ALT2 TSL 5 BASIC19.88■□□□□ 0.77
SEC61A2Q9H9S3 DNAJC4-202ENST00000321685 1288 ntAPPRIS P3 TSL 1 (best) BASIC19.88■□□□□ 0.77
SEC61A2Q9H9S3 DNAJC4-212ENST00000628077 938 ntTSL 5 BASIC19.88■□□□□ 0.77
SEC61A2Q9H9S3 ZYX-201ENST00000322764 2493 ntAPPRIS P2 TSL 1 (best) BASIC19.88■□□□□ 0.77
SEC61A2Q9H9S3 DONSON-201ENST00000303071 2170 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
SEC61A2Q9H9S3 KCNMA1-209ENST00000372443 5059 ntAPPRIS ALT2 TSL 5 BASIC19.88■□□□□ 0.77
SEC61A2Q9H9S3 DUSP8P3-201ENST00000399571 1760 ntBASIC19.88■□□□□ 0.77
SEC61A2Q9H9S3 CABLES1-201ENST00000256925 5002 ntAPPRIS P4 TSL 1 (best) BASIC19.87■□□□□ 0.77
SEC61A2Q9H9S3 KLC1-227ENST00000634686 2229 ntTSL 5 BASIC19.87■□□□□ 0.77
SEC61A2Q9H9S3 CEBPD-201ENST00000408965 2178 ntAPPRIS P1 BASIC19.87■□□□□ 0.77
SEC61A2Q9H9S3 CCDC106-205ENST00000588740 1404 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
SEC61A2Q9H9S3 TBX1-202ENST00000332710 2084 ntAPPRIS P4 TSL 1 (best) BASIC19.87■□□□□ 0.77
SEC61A2Q9H9S3 REV1-201ENST00000258428 4751 ntAPPRIS P3 TSL 1 (best) BASIC19.87■□□□□ 0.77
SEC61A2Q9H9S3 GRAMD1A-201ENST00000317991 2695 ntAPPRIS P3 TSL 1 (best) BASIC19.87■□□□□ 0.77
SEC61A2Q9H9S3 PFKFB3-201ENST00000317350 1999 ntAPPRIS ALT1 TSL 5 BASIC19.87■□□□□ 0.77
SEC61A2Q9H9S3 MMP21-201ENST00000368808 1919 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
SEC61A2Q9H9S3 PEX10-204ENST00000507596 1941 ntAPPRIS ALT1 TSL 5 BASIC19.87■□□□□ 0.77
SEC61A2Q9H9S3 C4orf36-201ENST00000295898 881 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
SEC61A2Q9H9S3 TFPT-201ENST00000391757 774 ntTSL 5 BASIC19.87■□□□□ 0.77
SEC61A2Q9H9S3 TFPT-202ENST00000391758 804 ntAPPRIS ALT2 TSL 1 (best) BASIC19.87■□□□□ 0.77
SEC61A2Q9H9S3 CHAC1-201ENST00000444189 1204 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
SEC61A2Q9H9S3 ERRFI1-203ENST00000469499 995 ntTSL 3 BASIC19.87■□□□□ 0.77
Retrieved 100 of 98,524 protein–RNA pairs in 33.9 ms