Protein–RNA interactions for Protein: Q99758

ABCA3, ATP-binding cassette sub-family A member 3, humanhuman

Predictions only

Length 1,704 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA3Q99758 MFF-208ENST00000409616 1247 ntTSL 5 BASIC30.33■■■□□ 2.45
ABCA3Q99758 WDR86-203ENST00000469830 1691 ntTSL 2 BASIC30.33■■■□□ 2.45
ABCA3Q99758 AC004854.2-201ENST00000608450 1441 ntBASIC30.33■■■□□ 2.45
ABCA3Q99758 WNT11-201ENST00000322563 1930 ntAPPRIS P1 TSL 1 (best) BASIC30.33■■■□□ 2.45
ABCA3Q99758 TPSG1-201ENST00000234798 1108 ntAPPRIS P1 TSL 1 (best) BASIC30.33■■■□□ 2.45
ABCA3Q99758 MAP2K4P1-201ENST00000438453 1195 ntBASIC30.33■■■□□ 2.45
ABCA3Q99758 HAS1-203ENST00000594621 760 ntTSL 1 (best) BASIC30.33■■■□□ 2.45
ABCA3Q99758 SLC35A2-211ENST00000634461 533 ntTSL 4 BASIC30.33■■■□□ 2.45
ABCA3Q99758 AC105233.4-201ENST00000642045 216 ntBASIC30.33■■■□□ 2.45
ABCA3Q99758 MAGI2-AS3-209ENST00000448195 774 ntTSL 3 BASIC30.32■■■□□ 2.44
ABCA3Q99758 SH3RF3-AS1-201ENST00000567491 1604 ntBASIC30.32■■■□□ 2.44
ABCA3Q99758 IQANK1-201ENST00000527139 1803 ntAPPRIS P1 TSL 5 BASIC30.32■■■□□ 2.44
ABCA3Q99758 SDF4-202ENST00000360001 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC30.31■■■□□ 2.44
ABCA3Q99758 SLC19A1-202ENST00000380010 1884 ntAPPRIS ALT2 TSL 1 (best) BASIC30.31■■■□□ 2.44
ABCA3Q99758 MEIOB-203ENST00000412554 1884 ntAPPRIS P1 TSL 5 BASIC30.31■■■□□ 2.44
ABCA3Q99758 DISC1-220ENST00000602873 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC30.31■■■□□ 2.44
ABCA3Q99758 CCDC115-202ENST00000409127 1247 ntTSL 2 BASIC30.31■■■□□ 2.44
ABCA3Q99758 AC006970.2-201ENST00000450065 779 ntBASIC30.31■■■□□ 2.44
ABCA3Q99758 BID-214ENST00000617586 542 ntTSL 5 BASIC30.31■■■□□ 2.44
ABCA3Q99758 MYO10-205ENST00000507288 1677 ntTSL 1 (best) BASIC30.31■■■□□ 2.44
ABCA3Q99758 HAR1A-201ENST00000433161 1882 ntTSL 1 (best) BASIC30.31■■■□□ 2.44
ABCA3Q99758 ZNF174-202ENST00000344823 1557 ntTSL 1 (best) BASIC30.31■■■□□ 2.44
ABCA3Q99758 SHF-206ENST00000560471 2499 ntTSL 5 BASIC30.31■■■□□ 2.44
ABCA3Q99758 LTBP3-212ENST00000529189 1997 ntTSL 2 BASIC30.3■■■□□ 2.44
ABCA3Q99758 MLLT10-204ENST00000377091 905 ntTSL 1 (best) BASIC30.3■■■□□ 2.44
ABCA3Q99758 PDXDC2P-202ENST00000527016 543 ntTSL 3 BASIC30.3■■■□□ 2.44
ABCA3Q99758 AP004607.4-201ENST00000530158 1459 ntBASIC30.3■■■□□ 2.44
ABCA3Q99758 SIGLEC15-201ENST00000389474 1573 ntAPPRIS P1 TSL 1 (best) BASIC30.3■■■□□ 2.44
ABCA3Q99758 PSMC3IP-208ENST00000590760 664 ntTSL 1 (best) BASIC30.3■■■□□ 2.44
ABCA3Q99758 AL109923.1-201ENST00000618799 583 ntBASIC30.3■■■□□ 2.44
ABCA3Q99758 HNF4A-205ENST00000443598 1603 ntTSL 1 (best) BASIC30.3■■■□□ 2.44
ABCA3Q99758 SYNGR3-201ENST00000248121 2051 ntAPPRIS P1 TSL 1 (best) BASIC30.29■■■□□ 2.44
ABCA3Q99758 DCAF4-206ENST00000509153 1521 ntAPPRIS ALT2 TSL 2 BASIC30.29■■■□□ 2.44
ABCA3Q99758 TAZ-213ENST00000601016 1889 ntTSL 1 (best) BASIC30.29■■■□□ 2.44
ABCA3Q99758 STK19-201ENST00000375331 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC30.29■■■□□ 2.44
ABCA3Q99758 NKIRAS2-204ENST00000393880 1644 ntAPPRIS P1 TSL 2 BASIC30.29■■■□□ 2.44
ABCA3Q99758 MDK-204ENST00000395569 686 ntTSL 1 (best) BASIC30.29■■■□□ 2.44
ABCA3Q99758 DCTPP1-205ENST00000568973 878 ntTSL 2 BASIC30.29■■■□□ 2.44
ABCA3Q99758 CD24-202ENST00000610952 802 ntAPPRIS P3 TSL 2 BASIC30.29■■■□□ 2.44
ABCA3Q99758 WIPI2-202ENST00000382384 1948 ntTSL 1 (best) BASIC30.29■■■□□ 2.44
ABCA3Q99758 PCMT1-202ENST00000367380 1628 ntTSL 2 BASIC30.28■■■□□ 2.44
ABCA3Q99758 PCMT1-211ENST00000544496 1628 ntTSL 2 BASIC30.28■■■□□ 2.44
ABCA3Q99758 TMEM51-205ENST00000434578 1861 ntTSL 1 (best) BASIC30.28■■■□□ 2.44
ABCA3Q99758 NCF1B-203ENST00000435988 1254 ntBASIC30.28■■■□□ 2.44
ABCA3Q99758 FZD2-201ENST00000315323 2112 ntAPPRIS P1 BASIC30.28■■■□□ 2.44
ABCA3Q99758 BCAP31-207ENST00000458587 1810 ntTSL 1 (best) BASIC30.28■■■□□ 2.44
ABCA3Q99758 MFSD5-201ENST00000329548 1760 ntAPPRIS P1 TSL 1 (best) BASIC30.28■■■□□ 2.44
ABCA3Q99758 PLPP1-201ENST00000264775 1550 ntAPPRIS P4 TSL 1 (best) BASIC30.28■■■□□ 2.44
ABCA3Q99758 URAD-201ENST00000332715 931 ntAPPRIS P1 TSL 5 BASIC30.27■■■□□ 2.44
ABCA3Q99758 PTRH1-201ENST00000335223 759 ntTSL 1 (best) BASIC30.27■■■□□ 2.44
ABCA3Q99758 UBE2J2-203ENST00000360466 1047 ntAPPRIS P1 TSL 2 BASIC30.27■■■□□ 2.44
ABCA3Q99758 AC073343.2-201ENST00000413182 548 ntTSL 4 BASIC30.27■■■□□ 2.44
ABCA3Q99758 GABARAPL2-205ENST00000568455 646 ntTSL 3 BASIC30.27■■■□□ 2.44
ABCA3Q99758 POU5F1-209ENST00000638788 369 ntTSL 5 BASIC30.27■■■□□ 2.44
ABCA3Q99758 MEX3D-201ENST00000402693 2850 ntAPPRIS P2 TSL 1 (best) BASIC30.27■■■□□ 2.44
ABCA3Q99758 SPIRE2-205ENST00000563972 1823 ntTSL 1 (best) BASIC30.27■■■□□ 2.44
ABCA3Q99758 HIST1H2AM-201ENST00000359611 393 ntAPPRIS P1 BASIC30.27■■■□□ 2.44
ABCA3Q99758 SLC26A1-203ENST00000398520 1111 ntTSL 1 (best) BASIC30.27■■■□□ 2.44
ABCA3Q99758 GAMT-205ENST00000640762 751 ntTSL 5 BASIC30.27■■■□□ 2.44
ABCA3Q99758 CEBPA-AS1-201ENST00000592982 2198 ntBASIC30.26■■■□□ 2.44
ABCA3Q99758 XBP1-207ENST00000611155 1794 ntTSL 5 BASIC30.26■■■□□ 2.44
ABCA3Q99758 RNASEH2B-201ENST00000336617 1629 ntAPPRIS P1 TSL 1 (best) BASIC30.26■■■□□ 2.43
ABCA3Q99758 DYRK2-203ENST00000393555 2209 ntAPPRIS ALT1 TSL 1 (best) BASIC30.26■■■□□ 2.43
ABCA3Q99758 RELL2-205ENST00000518856 1419 ntTSL 5 BASIC30.26■■■□□ 2.43
ABCA3Q99758 KIAA2013-202ENST00000376576 2539 ntTSL 2 BASIC30.25■■■□□ 2.43
ABCA3Q99758 NXT1-201ENST00000254998 1123 ntAPPRIS P1 TSL 1 (best) BASIC30.25■■■□□ 2.43
ABCA3Q99758 CD8B-205ENST00000393761 932 ntTSL 1 (best) BASIC30.25■■■□□ 2.43
ABCA3Q99758 CD8B-206ENST00000431506 692 ntAPPRIS ALT2 TSL 5 BASIC30.25■■■□□ 2.43
ABCA3Q99758 C12orf75-205ENST00000549893 719 ntTSL 3 BASIC30.25■■■□□ 2.43
ABCA3Q99758 TRIM14-202ENST00000342043 1479 ntAPPRIS P1 TSL 1 (best) BASIC30.25■■■□□ 2.43
ABCA3Q99758 ZNF775-201ENST00000329630 2257 ntAPPRIS P1 TSL 1 (best) BASIC30.25■■■□□ 2.43
ABCA3Q99758 MRPS7-203ENST00000579002 1638 ntTSL 2 BASIC30.25■■■□□ 2.43
ABCA3Q99758 MESP2-201ENST00000341735 1552 ntAPPRIS P1 TSL 1 (best) BASIC30.25■■■□□ 2.43
ABCA3Q99758 NUDT18-201ENST00000611621 1497 ntAPPRIS P1 TSL 1 (best) BASIC30.25■■■□□ 2.43
ABCA3Q99758 RPS6-203ENST00000380384 1355 ntTSL 1 (best) BASIC30.25■■■□□ 2.43
ABCA3Q99758 AL050303.2-201ENST00000619798 666 ntBASIC30.25■■■□□ 2.43
ABCA3Q99758 SNTB1-202ENST00000517992 2273 ntAPPRIS P1 TSL 1 (best) BASIC30.24■■■□□ 2.43
ABCA3Q99758 TMEM54-202ENST00000373463 999 ntAPPRIS P1 TSL 1 (best) BASIC30.24■■■□□ 2.43
ABCA3Q99758 ARL6IP4-204ENST00000392435 1339 ntAPPRIS ALT2 TSL 1 (best) BASIC30.23■■■□□ 2.43
ABCA3Q99758 TUBG1-201ENST00000251413 1611 ntAPPRIS P1 TSL 1 (best) BASIC30.23■■■□□ 2.43
ABCA3Q99758 MAF-201ENST00000326043 2646 ntAPPRIS P3 TSL 1 (best) BASIC30.23■■■□□ 2.43
ABCA3Q99758 MT3-201ENST00000200691 569 ntAPPRIS P1 TSL 1 (best) BASIC30.23■■■□□ 2.43
ABCA3Q99758 COX20-201ENST00000366528 568 ntTSL 2 BASIC30.23■■■□□ 2.43
ABCA3Q99758 AC092143.4-201ENST00000570217 559 ntTSL 4 BASIC30.23■■■□□ 2.43
ABCA3Q99758 WT1-AS_3.1-201ENST00000613262 234 ntBASIC30.23■■■□□ 2.43
ABCA3Q99758 FNTA-201ENST00000302279 1840 ntAPPRIS P1 TSL 1 (best) BASIC30.23■■■□□ 2.43
ABCA3Q99758 LIN7B-201ENST00000221459 755 ntAPPRIS P1 TSL 1 (best) BASIC30.22■■■□□ 2.43
ABCA3Q99758 VGLL4-208ENST00000424529 1025 ntTSL 1 (best) BASIC30.22■■■□□ 2.43
ABCA3Q99758 VIPR2-203ENST00000402066 1926 ntAPPRIS ALT2 TSL 5 BASIC30.22■■■□□ 2.43
ABCA3Q99758 FRAT2-201ENST00000371019 2213 ntAPPRIS P1 BASIC30.22■■■□□ 2.43
ABCA3Q99758 DNAJB11-201ENST00000265028 1688 ntAPPRIS P1 TSL 1 (best) BASIC30.22■■■□□ 2.43
ABCA3Q99758 DUSP8P4-201ENST00000399538 1761 ntBASIC30.21■■■□□ 2.43
ABCA3Q99758 HLA-L-211ENST00000482052 1765 ntBASIC30.21■■■□□ 2.43
ABCA3Q99758 ARSB-206ENST00000565165 1772 ntTSL 1 (best) BASIC30.21■■■□□ 2.43
ABCA3Q99758 ZNF451-202ENST00000370702 458 ntTSL 2 BASIC30.21■■■□□ 2.43
ABCA3Q99758 SDHAP3-201ENST00000436493 736 ntTSL 1 (best) BASIC30.21■■■□□ 2.43
ABCA3Q99758 GUSBP6-202ENST00000438529 1198 ntBASIC30.21■■■□□ 2.43
ABCA3Q99758 APTR-205ENST00000447009 902 ntTSL 2 BASIC30.21■■■□□ 2.43
ABCA3Q99758 CDH18-AS1-201ENST00000513573 424 ntTSL 2 BASIC30.21■■■□□ 2.43
ABCA3Q99758 USF3-203ENST00000491165 2133 ntAPPRIS ALT2 TSL 1 (best) BASIC30.21■■■□□ 2.43
Retrieved 100 of 98,524 protein–RNA pairs in 27.5 ms