Protein–RNA interactions for Protein: Q96AX1

VPS33A, Vacuolar protein sorting-associated protein 33A, humanhuman

Predictions only

Length 596 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33AQ96AX1 NFKBID-211ENST00000641389 1834 ntAPPRIS ALT2 BASIC21.39■■□□□ 1.01
VPS33AQ96AX1 NRXN2-205ENST00000409571 6381 ntAPPRIS ALT2 TSL 5 BASIC21.38■■□□□ 1.01
VPS33AQ96AX1 PDIA2-201ENST00000219406 1698 ntAPPRIS P2 TSL 1 (best) BASIC21.38■■□□□ 1.01
VPS33AQ96AX1 SAMD8-202ENST00000372690 1654 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
VPS33AQ96AX1 AC148477.1-201ENST00000537720 476 ntTSL 3 BASIC21.38■■□□□ 1.01
VPS33AQ96AX1 EPHA10-211ENST00000540011 720 ntTSL 5 BASIC21.38■■□□□ 1.01
VPS33AQ96AX1 CDKN2A-214ENST00000579755 1283 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
VPS33AQ96AX1 PTOV1-220ENST00000601675 1587 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
VPS33AQ96AX1 PARD3-214ENST00000545693 5962 ntAPPRIS ALT2 TSL 1 (best) BASIC21.38■■□□□ 1.01
VPS33AQ96AX1 SPRED3-204ENST00000587013 1539 ntTSL 5 BASIC21.38■■□□□ 1.01
VPS33AQ96AX1 AC242852.2-201ENST00000615738 1807 ntBASIC21.38■■□□□ 1.01
VPS33AQ96AX1 MYB-221ENST00000527615 2381 ntTSL 5 BASIC21.38■■□□□ 1.01
VPS33AQ96AX1 SLC35A3-204ENST00000427993 2062 ntAPPRIS P1 TSL 5 BASIC21.38■■□□□ 1.01
VPS33AQ96AX1 ZNF395-210ENST00000523095 1790 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
VPS33AQ96AX1 ARSB-201ENST00000264914 5327 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
VPS33AQ96AX1 CLN6-201ENST00000249806 2243 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
VPS33AQ96AX1 STEAP2-207ENST00000402625 1372 ntTSL 5 BASIC21.37■■□□□ 1.01
VPS33AQ96AX1 SMURF1-201ENST00000361125 5737 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
VPS33AQ96AX1 LRRC45-201ENST00000306688 2701 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
VPS33AQ96AX1 SETD9-201ENST00000285947 1619 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
VPS33AQ96AX1 TRIM28-201ENST00000253024 2960 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
VPS33AQ96AX1 HAR1A-201ENST00000433161 1882 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
VPS33AQ96AX1 NIPSNAP2-205ENST00000446778 1882 ntTSL 2 BASIC21.37■■□□□ 1.01
VPS33AQ96AX1 KLF3-203ENST00000514033 1871 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
VPS33AQ96AX1 SPHK1-201ENST00000323374 2138 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
VPS33AQ96AX1 CLIC3-203ENST00000494426 1017 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
VPS33AQ96AX1 BRD4-212ENST00000630599 726 ntTSL 2 BASIC21.37■■□□□ 1.01
VPS33AQ96AX1 MAGI2-212ENST00000626691 4599 ntTSL 5 BASIC21.37■■□□□ 1.01
VPS33AQ96AX1 VGLL3-201ENST00000383698 2475 ntAPPRIS ALT2 TSL 1 (best) BASIC21.37■■□□□ 1.01
VPS33AQ96AX1 IKBKG-211ENST00000615874 1460 ntTSL 5 BASIC21.37■■□□□ 1.01
VPS33AQ96AX1 IKBKG-215ENST00000619941 1463 ntTSL 5 BASIC21.37■■□□□ 1.01
VPS33AQ96AX1 AC064853.3-201ENST00000641801 1658 ntAPPRIS P1 BASIC21.37■■□□□ 1.01
VPS33AQ96AX1 LMF1-202ENST00000543238 2103 ntTSL 2 BASIC21.37■■□□□ 1.01
VPS33AQ96AX1 BRWD1-202ENST00000341322 2495 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
VPS33AQ96AX1 NPAS1-202ENST00000449844 2043 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
VPS33AQ96AX1 ZFAND2B-201ENST00000289528 1314 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
VPS33AQ96AX1 CITED4-201ENST00000372638 1316 ntAPPRIS P1 BASIC21.36■■□□□ 1.01
VPS33AQ96AX1 EGFL8-220ENST00000395512 1312 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
VPS33AQ96AX1 ZFP69B-204ENST00000484445 1976 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
VPS33AQ96AX1 ESRRAP2-201ENST00000418437 1549 ntBASIC21.36■■□□□ 1.01
VPS33AQ96AX1 SUMF1-201ENST00000272902 2159 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
VPS33AQ96AX1 AL353803.4-201ENST00000565882 1934 ntBASIC21.36■■□□□ 1.01
VPS33AQ96AX1 PRELID2-201ENST00000334744 2140 ntTSL 2 BASIC21.36■■□□□ 1.01
VPS33AQ96AX1 CT47A7-201ENST00000434883 1288 ntAPPRIS P1 TSL 2 BASIC21.36■■□□□ 1.01
VPS33AQ96AX1 AC092807.3-205ENST00000467666 531 ntTSL 3 BASIC21.36■■□□□ 1.01
VPS33AQ96AX1 KHDRBS2-201ENST00000281156 2332 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
VPS33AQ96AX1 CCDC7-201ENST00000277657 1899 ntAPPRIS P2 TSL 1 (best) BASIC21.36■■□□□ 1.01
VPS33AQ96AX1 IER2-201ENST00000292433 2085 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
VPS33AQ96AX1 AKT2-234ENST00000579047 2029 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
VPS33AQ96AX1 SPSB3-208ENST00000566339 1784 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
VPS33AQ96AX1 PRPSAP2-201ENST00000268835 1910 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
VPS33AQ96AX1 TULP1-202ENST00000322263 1941 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
VPS33AQ96AX1 ZC3H14-219ENST00000556945 2075 ntTSL 5 BASIC21.35■■□□□ 1.01
VPS33AQ96AX1 CREB1-205ENST00000430624 2005 ntAPPRIS P1 TSL 5 BASIC21.35■■□□□ 1.01
VPS33AQ96AX1 ABHD17AP5-201ENST00000580133 923 ntBASIC21.35■■□□□ 1.01
VPS33AQ96AX1 MIR4281-201ENST00000580852 62 ntBASIC21.35■■□□□ 1.01
VPS33AQ96AX1 RNF39-202ENST00000376751 1970 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
VPS33AQ96AX1 PARD3-210ENST00000374794 5669 ntAPPRIS ALT2 TSL 1 (best) BASIC21.35■■□□□ 1.01
VPS33AQ96AX1 PHF11-202ENST00000378319 1359 ntAPPRIS P3 TSL 1 (best) BASIC21.35■■□□□ 1.01
VPS33AQ96AX1 SLC25A11-201ENST00000225665 1897 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
VPS33AQ96AX1 USF2-207ENST00000595068 1612 ntTSL 5 BASIC21.34■■□□□ 1.01
VPS33AQ96AX1 SLC18A3-201ENST00000374115 2420 ntAPPRIS P1 BASIC21.34■■□□□ 1.01
VPS33AQ96AX1 SH3YL1-201ENST00000356150 1763 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
VPS33AQ96AX1 KCNK15-201ENST00000372861 2599 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
VPS33AQ96AX1 IDNK-201ENST00000376417 511 ntTSL 5 BASIC21.34■■□□□ 1.01
VPS33AQ96AX1 IDNK-202ENST00000376419 692 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
VPS33AQ96AX1 AL136090.1-201ENST00000446849 366 ntTSL 3 BASIC21.34■■□□□ 1.01
VPS33AQ96AX1 TBX2-AS1-203ENST00000590421 861 ntTSL 2 BASIC21.34■■□□□ 1.01
VPS33AQ96AX1 BHLHE23-202ENST00000612929 1109 ntBASIC21.34■■□□□ 1.01
VPS33AQ96AX1 CACNG2-201ENST00000300105 2384 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
VPS33AQ96AX1 SH2B1-204ENST00000395532 2529 ntAPPRIS P1 TSL 2 BASIC21.34■■□□□ 1.01
VPS33AQ96AX1 DHRS11-215ENST00000618403 1598 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
VPS33AQ96AX1 C11orf63-201ENST00000227349 3147 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
VPS33AQ96AX1 EFCAB1-202ENST00000433756 2286 ntTSL 2 BASIC21.34■■□□□ 1.01
VPS33AQ96AX1 MALT1-201ENST00000345724 2866 ntAPPRIS ALT2 TSL 1 (best) BASIC21.34■■□□□ 1.01
VPS33AQ96AX1 CRHR1-202ENST00000314537 2535 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
VPS33AQ96AX1 NRXN2-203ENST00000377551 6373 ntAPPRIS P3 TSL 1 (best) BASIC21.33■■□□□ 1.01
VPS33AQ96AX1 PPT2-244ENST00000324816 2053 ntAPPRIS ALT2 TSL 1 (best) BASIC21.33■■□□□ 1.01
VPS33AQ96AX1 SPOCK3-222ENST00000512681 1457 ntTSL 2 BASIC21.33■■□□□ 1.01
VPS33AQ96AX1 NTN1-201ENST00000173229 5954 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
VPS33AQ96AX1 ILDR2-205ENST00000526687 2299 ntTSL 5 BASIC21.33■■□□□ 1.01
VPS33AQ96AX1 COPRS-201ENST00000302362 968 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
VPS33AQ96AX1 NOX4-204ENST00000393282 560 ntTSL 1 (best) BASIC21.33■■□□□ 1.01
VPS33AQ96AX1 AC004448.1-201ENST00000458332 883 ntBASIC21.33■■□□□ 1.01
VPS33AQ96AX1 THA1P-201ENST00000590384 1145 ntBASIC21.33■■□□□ 1.01
VPS33AQ96AX1 NTF6A-201ENST00000591175 560 ntBASIC21.33■■□□□ 1.01
VPS33AQ96AX1 PVT1_1.1-201ENST00000615125 194 ntBASIC21.33■■□□□ 1.01
VPS33AQ96AX1 AC005551.1-201ENST00000641816 493 ntAPPRIS P1 BASIC21.33■■□□□ 1.01
VPS33AQ96AX1 ASPSCR1-202ENST00000306739 1843 ntAPPRIS P3 TSL 1 (best) BASIC21.33■■□□□ 1.01
VPS33AQ96AX1 RNF149-201ENST00000295317 2458 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1
VPS33AQ96AX1 ABCG4-204ENST00000615496 2459 ntAPPRIS P1 TSL 2 BASIC21.33■■□□□ 1
VPS33AQ96AX1 TRIM3-201ENST00000345851 2879 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1
VPS33AQ96AX1 SLCO3A1-202ENST00000424469 2705 ntTSL 1 (best) BASIC21.33■■□□□ 1
VPS33AQ96AX1 DYRK1B-204ENST00000593685 2724 ntAPPRIS P3 TSL 5 BASIC21.33■■□□□ 1
VPS33AQ96AX1 TMEM159-201ENST00000233047 2014 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1
VPS33AQ96AX1 ANKHD1-204ENST00000394722 2035 ntTSL 1 (best) BASIC21.33■■□□□ 1
VPS33AQ96AX1 BX088645.1-201ENST00000636699 1728 ntAPPRIS P1 TSL 5 BASIC21.32■■□□□ 1
VPS33AQ96AX1 VSX1-205ENST00000429762 1977 ntTSL 1 (best) BASIC21.32■■□□□ 1
VPS33AQ96AX1 AC007375.3-201ENST00000600936 2314 ntBASIC21.32■■□□□ 1
VPS33AQ96AX1 HNRNPD-202ENST00000352301 1667 ntAPPRIS ALT1 TSL 1 (best) BASIC21.32■■□□□ 1
Retrieved 100 of 98,524 protein–RNA pairs in 33.1 ms