Protein–RNA interactions for Protein: Q8NHS4

CLHC1, Clathrin heavy chain linker domain-containing protein 1, humanhuman

Predictions only

Length 586 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLHC1Q8NHS4 MRPL23-202ENST00000381519 643 ntAPPRIS P1 TSL 3 BASIC21.36■■□□□ 1.01
CLHC1Q8NHS4 MRPL23-205ENST00000397298 736 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
CLHC1Q8NHS4 TMEM238-201ENST00000444469 1000 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
CLHC1Q8NHS4 AC092849.1-201ENST00000475250 303 ntTSL 4 BASIC21.36■■□□□ 1.01
CLHC1Q8NHS4 DUSP22-214ENST00000605315 867 ntTSL 5 BASIC21.36■■□□□ 1.01
CLHC1Q8NHS4 MIR663AHG-227ENST00000608084 765 ntTSL 5 BASIC21.36■■□□□ 1.01
CLHC1Q8NHS4 TMEM8B-203ENST00000377996 2473 ntTSL 2 BASIC21.36■■□□□ 1.01
CLHC1Q8NHS4 ELL3-201ENST00000319359 2352 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
CLHC1Q8NHS4 H2AFY2-201ENST00000373255 1980 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
CLHC1Q8NHS4 SIGLEC15-201ENST00000389474 1573 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
CLHC1Q8NHS4 SYT6-209ENST00000610222 1707 ntAPPRIS P1 TSL 5 BASIC21.35■■□□□ 1.01
CLHC1Q8NHS4 GCA-201ENST00000233612 1694 ntTSL 2 BASIC21.35■■□□□ 1.01
CLHC1Q8NHS4 PNMA6A-201ENST00000421798 2209 ntAPPRIS P1 TSL 2 BASIC21.35■■□□□ 1.01
CLHC1Q8NHS4 CORO1A-201ENST00000219150 1803 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
CLHC1Q8NHS4 AC090587.2-201ENST00000430222 527 ntTSL 2 BASIC21.35■■□□□ 1.01
CLHC1Q8NHS4 AC243829.1-202ENST00000618848 486 ntTSL 3 BASIC21.35■■□□□ 1.01
CLHC1Q8NHS4 FAIM-201ENST00000338446 1622 ntTSL 5 BASIC21.35■■□□□ 1.01
CLHC1Q8NHS4 MYBL2-201ENST00000217026 2639 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
CLHC1Q8NHS4 SLC10A3-201ENST00000263512 2161 ntAPPRIS P3 TSL 2 BASIC21.34■■□□□ 1.01
CLHC1Q8NHS4 C6orf89-201ENST00000355190 1309 ntAPPRIS P3 TSL 1 (best) BASIC21.34■■□□□ 1.01
CLHC1Q8NHS4 H2AFY-217ENST00000511689 2789 ntAPPRIS P4 TSL 1 (best) BASIC21.34■■□□□ 1.01
CLHC1Q8NHS4 TMEM147-203ENST00000392205 767 ntTSL 2 BASIC21.34■■□□□ 1.01
CLHC1Q8NHS4 CLTA-204ENST00000433436 1235 ntAPPRIS ALT1 TSL 1 (best) BASIC21.34■■□□□ 1.01
CLHC1Q8NHS4 PRR7-204ENST00000510492 1285 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
CLHC1Q8NHS4 CLTA-209ENST00000538225 1181 ntTSL 2 BASIC21.34■■□□□ 1.01
CLHC1Q8NHS4 CLTA-210ENST00000540080 989 ntTSL 2 BASIC21.34■■□□□ 1.01
CLHC1Q8NHS4 UBFD1-208ENST00000567264 642 ntAPPRIS ALT2 TSL 5 BASIC21.34■■□□□ 1.01
CLHC1Q8NHS4 LINC01925-201ENST00000579492 500 ntTSL 5 BASIC21.34■■□□□ 1.01
CLHC1Q8NHS4 ZNF180-205ENST00000587047 525 ntTSL 4 BASIC21.34■■□□□ 1.01
CLHC1Q8NHS4 CCDC106-205ENST00000588740 1404 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
CLHC1Q8NHS4 BX088645.1-201ENST00000636699 1728 ntAPPRIS P1 TSL 5 BASIC21.34■■□□□ 1.01
CLHC1Q8NHS4 HAR1A-201ENST00000433161 1882 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
CLHC1Q8NHS4 CACYBP-201ENST00000367679 2766 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
CLHC1Q8NHS4 PDE10A-205ENST00000616273 2118 ntTSL 2 BASIC21.34■■□□□ 1.01
CLHC1Q8NHS4 KCNIP1-201ENST00000328939 2014 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
CLHC1Q8NHS4 PARD3-202ENST00000346874 5894 ntAPPRIS ALT2 TSL 1 (best) BASIC21.33■■□□□ 1.01
CLHC1Q8NHS4 PARD3-203ENST00000350537 5867 ntAPPRIS ALT2 TSL 1 (best) BASIC21.33■■□□□ 1.01
CLHC1Q8NHS4 DNAJC25-GNG10-201ENST00000374294 1448 ntAPPRIS P1 TSL 2 BASIC21.33■■□□□ 1.01
CLHC1Q8NHS4 VSX1-205ENST00000429762 1977 ntTSL 1 (best) BASIC21.33■■□□□ 1.01
CLHC1Q8NHS4 NKX6-2-201ENST00000368592 2673 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
CLHC1Q8NHS4 SNHG7-201ENST00000414282 2357 ntTSL 2 BASIC21.33■■□□□ 1
CLHC1Q8NHS4 RASSF5-202ENST00000579436 2064 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1
CLHC1Q8NHS4 SEPT8-207ENST00000378719 2889 ntTSL 1 (best) BASIC21.33■■□□□ 1
CLHC1Q8NHS4 CADM1-201ENST00000331581 1766 ntTSL 1 (best) BASIC21.33■■□□□ 1
CLHC1Q8NHS4 PTPRJ-201ENST00000418331 5122 ntAPPRIS P2 TSL 1 (best) BASIC21.33■■□□□ 1
CLHC1Q8NHS4 NIPSNAP2-205ENST00000446778 1882 ntTSL 2 BASIC21.32■■□□□ 1
CLHC1Q8NHS4 MSL1-203ENST00000577454 2081 ntTSL 2 BASIC21.32■■□□□ 1
CLHC1Q8NHS4 ZFAND5-202ENST00000343431 1073 ntAPPRIS P1 TSL 5 BASIC21.32■■□□□ 1
CLHC1Q8NHS4 RBPMS-209ENST00000520161 842 ntTSL 2 BASIC21.32■■□□□ 1
CLHC1Q8NHS4 ZNF444-201ENST00000337080 2042 ntAPPRIS P3 TSL 1 (best) BASIC21.31■■□□□ 1
CLHC1Q8NHS4 CREG1-201ENST00000370509 1974 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
CLHC1Q8NHS4 METTL24-201ENST00000338882 1119 ntAPPRIS P1 TSL 5 BASIC21.31■■□□□ 1
CLHC1Q8NHS4 AC026785.2-201ENST00000511821 867 ntTSL 2 BASIC21.31■■□□□ 1
CLHC1Q8NHS4 IGFBP7-203ENST00000514062 1251 ntAPPRIS ALT2 TSL 2 BASIC21.31■■□□□ 1
CLHC1Q8NHS4 SHMT1-202ENST00000352886 2437 ntTSL 2 BASIC21.31■■□□□ 1
CLHC1Q8NHS4 CPE-201ENST00000402744 2421 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
CLHC1Q8NHS4 ST3GAL4-202ENST00000356132 1745 ntTSL 5 BASIC21.31■■□□□ 1
CLHC1Q8NHS4 RPP38-201ENST00000378197 1457 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
CLHC1Q8NHS4 TRAM2-AS1-204ENST00000606714 2453 ntTSL 2 BASIC21.31■■□□□ 1
CLHC1Q8NHS4 PCSK6-220ENST00000622483 3132 ntAPPRIS ALT2 TSL 1 (best) BASIC21.31■■□□□ 1
CLHC1Q8NHS4 RNF39-201ENST00000244360 2206 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
CLHC1Q8NHS4 SH3YL1-201ENST00000356150 1763 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
CLHC1Q8NHS4 REPS2-202ENST00000357277 7953 ntAPPRIS P3 TSL 1 (best) BASIC21.3■■□□□ 1
CLHC1Q8NHS4 MAGI2-202ENST00000419488 6800 ntAPPRIS ALT2 TSL 1 (best) BASIC21.3■■□□□ 1
CLHC1Q8NHS4 PTPRM-211ENST00000580170 5941 ntAPPRIS ALT2 TSL 1 (best) BASIC21.3■■□□□ 1
CLHC1Q8NHS4 FOSL1-202ENST00000448083 1427 ntTSL 2 BASIC21.3■■□□□ 1
CLHC1Q8NHS4 IRX2-202ENST00000382611 2630 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
CLHC1Q8NHS4 AC112229.4-201ENST00000488671 1528 ntTSL 2 BASIC21.3■■□□□ 1
CLHC1Q8NHS4 NBL1-202ENST00000375136 2172 ntAPPRIS P3 TSL 1 (best) BASIC21.3■■□□□ 1
CLHC1Q8NHS4 LTB4R-201ENST00000345363 1616 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
CLHC1Q8NHS4 PAXBP1-201ENST00000290178 2564 ntTSL 1 (best) BASIC21.3■■□□□ 1
CLHC1Q8NHS4 DLK2-201ENST00000357338 2038 ntAPPRIS P3 TSL 2 BASIC21.3■■□□□ 1
CLHC1Q8NHS4 CTDSP2-203ENST00000547701 988 ntTSL 1 (best) BASIC21.3■■□□□ 1
CLHC1Q8NHS4 PRTG-204ENST00000561292 833 ntTSL 3 BASIC21.3■■□□□ 1
CLHC1Q8NHS4 MRGPRF-AS1-203ENST00000569432 542 ntTSL 4 BASIC21.3■■□□□ 1
CLHC1Q8NHS4 AC021242.3-201ENST00000607598 1377 ntBASIC21.3■■□□□ 1
CLHC1Q8NHS4 NELFCD-213ENST00000602795 2305 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
CLHC1Q8NHS4 TPI1-210ENST00000613953 1460 ntTSL 1 (best) BASIC21.3■■□□□ 1
CLHC1Q8NHS4 GAL3ST1-202ENST00000401975 1791 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
CLHC1Q8NHS4 GPSM1-204ENST00000429455 2057 ntTSL 3 BASIC21.3■■□□□ 1
CLHC1Q8NHS4 NEURL4-202ENST00000399464 5200 ntAPPRIS P4 TSL 1 (best) BASIC21.3■■□□□ 1
CLHC1Q8NHS4 CBWD3-213ENST00000618217 1611 ntTSL 1 (best) BASIC21.29■■□□□ 1
CLHC1Q8NHS4 ACTL10-201ENST00000330271 2028 ntAPPRIS P1 BASIC21.29■■□□□ 1
CLHC1Q8NHS4 LSR-202ENST00000354900 2105 ntAPPRIS ALT2 TSL 1 (best) BASIC21.29■■□□□ 1
CLHC1Q8NHS4 LINC00565-201ENST00000562710 2331 ntBASIC21.29■■□□□ 1
CLHC1Q8NHS4 SUMF1-201ENST00000272902 2159 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
CLHC1Q8NHS4 MT2A-201ENST00000245185 786 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
CLHC1Q8NHS4 RAB33A-201ENST00000257017 1258 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
CLHC1Q8NHS4 NPW-201ENST00000329610 498 ntAPPRIS P2 TSL 1 (best) BASIC21.29■■□□□ 1
CLHC1Q8NHS4 BX664725.1-201ENST00000438252 379 ntBASIC21.29■■□□□ 1
CLHC1Q8NHS4 ANKRD28-201ENST00000399451 6564 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
CLHC1Q8NHS4 STEAP2-204ENST00000394626 2456 ntTSL 2 BASIC21.29■■□□□ 1
CLHC1Q8NHS4 LSR-203ENST00000360798 1963 ntTSL 2 BASIC21.28■■□□□ 1
CLHC1Q8NHS4 CRHR1-202ENST00000314537 2535 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
CLHC1Q8NHS4 KCNQ5-205ENST00000370398 6345 ntAPPRIS P3 TSL 1 (best) BASIC21.28■■□□□ 1
CLHC1Q8NHS4 SMUG1-203ENST00000401977 1082 ntAPPRIS P1 TSL 5 BASIC21.28■■□□□ 1
CLHC1Q8NHS4 AC009163.4-201ENST00000567194 530 ntAPPRIS P1 TSL 2 BASIC21.28■■□□□ 1
CLHC1Q8NHS4 SYNGR3-202ENST00000562045 1743 ntTSL 2 BASIC21.28■■□□□ 1
CLHC1Q8NHS4 AC144652.1-201ENST00000609974 1624 ntBASIC21.28■■□□□ 1
CLHC1Q8NHS4 FNTA-208ENST00000529687 1950 ntTSL 2 BASIC21.28■■□□□ 1
Retrieved 100 of 98,524 protein–RNA pairs in 19.2 ms