Protein–RNA interactions for Protein: Q6IN85

PPP4R3A, Serine/threonine-protein phosphatase 4 regulatory subunit 3A, humanhuman

Predictions only

Length 833 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PPP4R3AQ6IN85 RAD9A-201ENST00000307980 2119 ntAPPRIS P1 TSL 1 (best) BASIC25.35■■□□□ 1.65
PPP4R3AQ6IN85 AC105935.1-201ENST00000424174 422 ntTSL 3 BASIC25.35■■□□□ 1.65
PPP4R3AQ6IN85 ARFIP2-205ENST00000525235 852 ntTSL 2 BASIC25.35■■□□□ 1.65
PPP4R3AQ6IN85 OIP5-AS1-208ENST00000560706 473 ntTSL 5 BASIC25.35■■□□□ 1.65
PPP4R3AQ6IN85 KRTAP5-4-202ENST00000616115 660 ntAPPRIS ALT2 TSL 5 BASIC25.35■■□□□ 1.65
PPP4R3AQ6IN85 DUSP8P3-201ENST00000399571 1760 ntBASIC25.35■■□□□ 1.65
PPP4R3AQ6IN85 B3GALT4-204ENST00000451237 1694 ntAPPRIS P1 BASIC25.35■■□□□ 1.65
PPP4R3AQ6IN85 SPAG7-205ENST00000573366 1668 ntTSL 3 BASIC25.35■■□□□ 1.65
PPP4R3AQ6IN85 DNAAF3-203ENST00000524407 2059 ntAPPRIS ALT2 TSL 1 (best) BASIC25.35■■□□□ 1.65
PPP4R3AQ6IN85 PKIB-204ENST00000368448 1561 ntAPPRIS P1 TSL 5 BASIC25.35■■□□□ 1.65
PPP4R3AQ6IN85 LEFTY1-201ENST00000272134 1626 ntAPPRIS P1 TSL 1 (best) BASIC25.34■■□□□ 1.65
PPP4R3AQ6IN85 PACRGL-201ENST00000295290 1937 ntTSL 5 BASIC25.34■■□□□ 1.65
PPP4R3AQ6IN85 EZH2-208ENST00000483967 2466 ntAPPRIS ALT1 TSL 2 BASIC25.34■■□□□ 1.65
PPP4R3AQ6IN85 NPTXR-201ENST00000333039 5784 ntAPPRIS ALT2 TSL 1 (best) BASIC25.34■■□□□ 1.65
PPP4R3AQ6IN85 FAM53B-201ENST00000280780 1568 ntTSL 1 (best) BASIC25.34■■□□□ 1.65
PPP4R3AQ6IN85 SLC22A17-201ENST00000206544 2284 ntAPPRIS P4 TSL 1 (best) BASIC25.34■■□□□ 1.65
PPP4R3AQ6IN85 KLC1-201ENST00000246489 2294 ntAPPRIS P1 TSL 5 BASIC25.34■■□□□ 1.65
PPP4R3AQ6IN85 LDB1-201ENST00000361198 2285 ntAPPRIS P1 TSL 1 (best) BASIC25.34■■□□□ 1.65
PPP4R3AQ6IN85 KLC1-224ENST00000557450 2265 ntTSL 5 BASIC25.34■■□□□ 1.65
PPP4R3AQ6IN85 FOXA2-201ENST00000377115 2401 ntAPPRIS P3 TSL 1 (best) BASIC25.34■■□□□ 1.65
PPP4R3AQ6IN85 SLC12A2-201ENST00000262461 6885 ntAPPRIS P3 TSL 1 (best) BASIC25.34■■□□□ 1.65
PPP4R3AQ6IN85 FRS3-202ENST00000373018 2174 ntAPPRIS P1 TSL 3 BASIC25.34■■□□□ 1.65
PPP4R3AQ6IN85 CDC16-206ENST00000375310 2156 ntTSL 1 (best) BASIC25.34■■□□□ 1.65
PPP4R3AQ6IN85 HOXD4-201ENST00000306324 1464 ntAPPRIS P1 TSL 1 (best) BASIC25.34■■□□□ 1.65
PPP4R3AQ6IN85 BLOC1S4-201ENST00000320776 1617 ntAPPRIS P1 BASIC25.34■■□□□ 1.65
PPP4R3AQ6IN85 CCDC151-203ENST00000591179 1943 ntTSL 1 (best) BASIC25.33■■□□□ 1.65
PPP4R3AQ6IN85 EGR3-203ENST00000519492 1500 ntTSL 5 BASIC25.33■■□□□ 1.65
PPP4R3AQ6IN85 GTSE1-AS1-202ENST00000623117 1518 ntBASIC25.33■■□□□ 1.65
PPP4R3AQ6IN85 C1QTNF4-201ENST00000302514 1664 ntAPPRIS P1 TSL 1 (best) BASIC25.33■■□□□ 1.65
PPP4R3AQ6IN85 NPHS2-201ENST00000367615 1855 ntAPPRIS P1 TSL 1 (best) BASIC25.33■■□□□ 1.65
PPP4R3AQ6IN85 KRTAP5-1-201ENST00000382171 942 ntAPPRIS P1 BASIC25.33■■□□□ 1.65
PPP4R3AQ6IN85 AL122058.1-201ENST00000412321 1166 ntTSL 1 (best) BASIC25.33■■□□□ 1.65
PPP4R3AQ6IN85 DPP10-AS1-201ENST00000432658 730 ntTSL 1 (best) BASIC25.33■■□□□ 1.65
PPP4R3AQ6IN85 VAMP2-204ENST00000488857 874 ntAPPRIS ALT1 TSL 3 BASIC25.33■■□□□ 1.65
PPP4R3AQ6IN85 AC009086.3-201ENST00000623486 1008 ntBASIC25.33■■□□□ 1.65
PPP4R3AQ6IN85 SIMC1-204ENST00000430704 1925 ntAPPRIS P3 TSL 2 BASIC25.33■■□□□ 1.65
PPP4R3AQ6IN85 CCR10-203ENST00000591765 1942 ntTSL 3 BASIC25.33■■□□□ 1.65
PPP4R3AQ6IN85 TMEM230-205ENST00000379279 1636 ntAPPRIS P1 TSL 2 BASIC25.33■■□□□ 1.65
PPP4R3AQ6IN85 ST3GAL4-213ENST00000530591 1459 ntAPPRIS P3 TSL 1 (best) BASIC25.33■■□□□ 1.65
PPP4R3AQ6IN85 NAE1-202ENST00000359087 1825 ntTSL 2 BASIC25.33■■□□□ 1.64
PPP4R3AQ6IN85 IKZF1-207ENST00000413698 1808 ntTSL 1 (best) BASIC25.33■■□□□ 1.64
PPP4R3AQ6IN85 TOP2B-204ENST00000435706 5389 ntAPPRIS P3 TSL 1 (best) BASIC25.32■■□□□ 1.64
PPP4R3AQ6IN85 PDLIM2-202ENST00000308354 2236 ntTSL 1 (best) BASIC25.32■■□□□ 1.64
PPP4R3AQ6IN85 PDLIM2-203ENST00000339162 2226 ntTSL 1 (best) BASIC25.32■■□□□ 1.64
PPP4R3AQ6IN85 FXYD3-201ENST00000344013 1404 ntTSL 5 BASIC25.32■■□□□ 1.64
PPP4R3AQ6IN85 AARD-201ENST00000378279 2299 ntAPPRIS P1 TSL 1 (best) BASIC25.32■■□□□ 1.64
PPP4R3AQ6IN85 PRICKLE4-201ENST00000394259 939 ntAPPRIS ALT2 TSL 5 BASIC25.32■■□□□ 1.64
PPP4R3AQ6IN85 HM13-AS1-201ENST00000412178 489 ntTSL 3 BASIC25.32■■□□□ 1.64
PPP4R3AQ6IN85 AC006455.2-201ENST00000429931 906 ntBASIC25.32■■□□□ 1.64
PPP4R3AQ6IN85 RNASEH2B-201ENST00000336617 1629 ntAPPRIS P1 TSL 1 (best) BASIC25.32■■□□□ 1.64
PPP4R3AQ6IN85 C21orf2-203ENST00000397956 1634 ntAPPRIS ALT2 TSL 1 (best) BASIC25.32■■□□□ 1.64
PPP4R3AQ6IN85 PCSK6-218ENST00000619160 3093 ntAPPRIS ALT2 TSL 1 (best) BASIC25.32■■□□□ 1.64
PPP4R3AQ6IN85 POLD2-207ENST00000452185 1659 ntAPPRIS P1 TSL 1 (best) BASIC25.32■■□□□ 1.64
PPP4R3AQ6IN85 CCDC166-201ENST00000542437 1320 ntAPPRIS P1 TSL 2 BASIC25.32■■□□□ 1.64
PPP4R3AQ6IN85 TTC9-201ENST00000256367 5217 ntAPPRIS P1 TSL 1 (best) BASIC25.32■■□□□ 1.64
PPP4R3AQ6IN85 ANKS6-201ENST00000353234 7164 ntAPPRIS P1 TSL 1 (best) BASIC25.32■■□□□ 1.64
PPP4R3AQ6IN85 CPLX1-201ENST00000304062 2181 ntAPPRIS P1 TSL 1 (best) BASIC25.31■■□□□ 1.64
PPP4R3AQ6IN85 DUSP8P5-201ENST00000422884 1815 ntBASIC25.31■■□□□ 1.64
PPP4R3AQ6IN85 CLYBL-202ENST00000376354 1127 ntTSL 5 BASIC25.31■■□□□ 1.64
PPP4R3AQ6IN85 WDR86-AS1-204ENST00000489632 751 ntTSL 3 BASIC25.31■■□□□ 1.64
PPP4R3AQ6IN85 CDKN2A-208ENST00000498124 880 ntTSL 1 (best) BASIC25.31■■□□□ 1.64
PPP4R3AQ6IN85 TOLLIP-208ENST00000527938 549 ntTSL 4 BASIC25.31■■□□□ 1.64
PPP4R3AQ6IN85 DUX4L19-201ENST00000557448 1267 ntBASIC25.31■■□□□ 1.64
PPP4R3AQ6IN85 FAM47E-201ENST00000424749 1484 ntAPPRIS P3 TSL 5 BASIC25.31■■□□□ 1.64
PPP4R3AQ6IN85 NAE1-204ENST00000394074 1654 ntTSL 5 BASIC25.31■■□□□ 1.64
PPP4R3AQ6IN85 PRSS29P-202ENST00000568091 1864 ntTSL 5 BASIC25.31■■□□□ 1.64
PPP4R3AQ6IN85 NKIRAS2-206ENST00000393885 1909 ntAPPRIS P1 TSL 1 (best) BASIC25.31■■□□□ 1.64
PPP4R3AQ6IN85 LENG1-201ENST00000222224 1542 ntAPPRIS P1 TSL 1 (best) BASIC25.31■■□□□ 1.64
PPP4R3AQ6IN85 NFE2L3P1-201ENST00000588207 1959 ntBASIC25.31■■□□□ 1.64
PPP4R3AQ6IN85 CTBP1-203ENST00000382952 2467 ntAPPRIS P1 TSL 1 (best) BASIC25.3■■□□□ 1.64
PPP4R3AQ6IN85 AC006455.5-202ENST00000615248 2284 ntTSL 1 (best) BASIC25.3■■□□□ 1.64
PPP4R3AQ6IN85 SIX3-201ENST00000260653 2523 ntAPPRIS P1 TSL 1 (best) BASIC25.3■■□□□ 1.64
PPP4R3AQ6IN85 DCTPP1-201ENST00000319285 1222 ntAPPRIS P1 TSL 1 (best) BASIC25.3■■□□□ 1.64
PPP4R3AQ6IN85 CARD19-201ENST00000375464 855 ntAPPRIS P1 TSL 1 (best) BASIC25.3■■□□□ 1.64
PPP4R3AQ6IN85 KDELR3-202ENST00000409006 931 ntTSL 1 (best) BASIC25.3■■□□□ 1.64
PPP4R3AQ6IN85 AL499627.2-201ENST00000606283 725 ntBASIC25.3■■□□□ 1.64
PPP4R3AQ6IN85 FBXW4-201ENST00000331272 2483 ntAPPRIS P1 TSL 1 (best) BASIC25.3■■□□□ 1.64
PPP4R3AQ6IN85 RARA-203ENST00000394086 2008 ntTSL 2 BASIC25.3■■□□□ 1.64
PPP4R3AQ6IN85 ADD1-202ENST00000355842 4743 ntTSL 1 (best) BASIC25.3■■□□□ 1.64
PPP4R3AQ6IN85 AC011498.4-201ENST00000586020 1803 ntAPPRIS P1 TSL 2 BASIC25.3■■□□□ 1.64
PPP4R3AQ6IN85 IRX5-201ENST00000320990 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC25.3■■□□□ 1.64
PPP4R3AQ6IN85 C3orf58-207ENST00000495414 1876 ntTSL 2 BASIC25.3■■□□□ 1.64
PPP4R3AQ6IN85 SLC35A2-210ENST00000616181 1614 ntTSL 2 BASIC25.3■■□□□ 1.64
PPP4R3AQ6IN85 ERF-201ENST00000222329 2698 ntAPPRIS P1 TSL 1 (best) BASIC25.3■■□□□ 1.64
PPP4R3AQ6IN85 EEF1D-201ENST00000317198 1458 ntAPPRIS ALT2 TSL 5 BASIC25.29■■□□□ 1.64
PPP4R3AQ6IN85 SRPK3-203ENST00000370104 1753 ntAPPRIS ALT2 TSL 1 (best) BASIC25.29■■□□□ 1.64
PPP4R3AQ6IN85 TBX1-203ENST00000359500 1538 ntAPPRIS ALT2 TSL 1 (best) BASIC25.29■■□□□ 1.64
PPP4R3AQ6IN85 ASCC1-204ENST00000394915 1510 ntTSL 5 BASIC25.29■■□□□ 1.64
PPP4R3AQ6IN85 FAM136A-201ENST00000037869 1810 ntAPPRIS P1 TSL 1 (best) BASIC25.29■■□□□ 1.64
PPP4R3AQ6IN85 TMEM80-201ENST00000397510 1094 ntAPPRIS P2 TSL 5 BASIC25.29■■□□□ 1.64
PPP4R3AQ6IN85 KCNS1-202ENST00000537075 2136 ntAPPRIS P1 TSL 1 (best) BASIC25.29■■□□□ 1.64
PPP4R3AQ6IN85 CDKN3-207ENST00000543789 610 ntTSL 5 BASIC25.29■■□□□ 1.64
PPP4R3AQ6IN85 SF1-220ENST00000626028 704 ntTSL 2 BASIC25.29■■□□□ 1.64
PPP4R3AQ6IN85 EID2B-201ENST00000326282 1865 ntAPPRIS P1 BASIC25.29■■□□□ 1.64
PPP4R3AQ6IN85 FJX1-201ENST00000317811 2450 ntAPPRIS P1 BASIC25.29■■□□□ 1.64
PPP4R3AQ6IN85 MIR222HG-201ENST00000602461 1379 ntTSL 5 BASIC25.29■■□□□ 1.64
PPP4R3AQ6IN85 ACSF2-203ENST00000502667 2098 ntTSL 2 BASIC25.28■■□□□ 1.64
PPP4R3AQ6IN85 SYT7-203ENST00000539008 2061 ntTSL 5 BASIC25.28■■□□□ 1.64
PPP4R3AQ6IN85 ACAD8-202ENST00000374752 1797 ntTSL 2 BASIC25.28■■□□□ 1.64
PPP4R3AQ6IN85 ZYX-201ENST00000322764 2493 ntAPPRIS P2 TSL 1 (best) BASIC25.28■■□□□ 1.64
Retrieved 100 of 98,524 protein–RNA pairs in 17.2 ms