Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 RALB-203ENST00000420510 1252 ntAPPRIS P1 TSL 2 BASIC20.67■□□□□ 0.9
RNF4P78317 NR2F1-AS1-210ENST00000606739 1431 ntTSL 2 BASIC20.67■□□□□ 0.9
RNF4P78317 ACAD8-202ENST00000374752 1797 ntTSL 2 BASIC20.67■□□□□ 0.9
RNF4P78317 AC113189.4-201ENST00000575331 5553 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
RNF4P78317 AC007009.1-201ENST00000458624 429 ntTSL 2 BASIC20.66■□□□□ 0.9
RNF4P78317 AC004707.1-201ENST00000511627 715 ntTSL 3 BASIC20.66■□□□□ 0.9
RNF4P78317 AL359317.1-201ENST00000556316 578 ntTSL 4 BASIC20.66■□□□□ 0.9
RNF4P78317 AL499627.2-201ENST00000606283 725 ntBASIC20.66■□□□□ 0.9
RNF4P78317 FAM53B-201ENST00000280780 1568 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
RNF4P78317 WTAP-201ENST00000337387 1622 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
RNF4P78317 CCDC47-204ENST00000582252 1719 ntTSL 2 BASIC20.66■□□□□ 0.9
RNF4P78317 CCDC157-202ENST00000399824 1759 ntAPPRIS ALT2 TSL 1 (best) BASIC20.66■□□□□ 0.9
RNF4P78317 AL353803.4-201ENST00000565882 1934 ntBASIC20.66■□□□□ 0.9
RNF4P78317 NKX2-3-202ENST00000622383 1986 ntTSL 5 BASIC20.66■□□□□ 0.9
RNF4P78317 MBOAT7-205ENST00000431666 2471 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
RNF4P78317 THRA-202ENST00000394121 2260 ntTSL 2 BASIC20.65■□□□□ 0.9
RNF4P78317 PRSS56-201ENST00000449534 2157 ntAPPRIS ALT2 TSL 5 BASIC20.65■□□□□ 0.9
RNF4P78317 PRSS56-203ENST00000617714 2158 ntAPPRIS P2 TSL 5 BASIC20.65■□□□□ 0.9
RNF4P78317 NECTIN2-202ENST00000252485 2112 ntAPPRIS P3 TSL 1 (best) BASIC20.65■□□□□ 0.9
RNF4P78317 PHLPP1-201ENST00000262719 6390 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
RNF4P78317 MRPL38-201ENST00000309352 1888 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
RNF4P78317 HAGHL-212ENST00000564537 1667 ntTSL 2 BASIC20.65■□□□□ 0.9
RNF4P78317 RNASEH2B-201ENST00000336617 1629 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
RNF4P78317 SH3RF3-AS1-201ENST00000567491 1604 ntBASIC20.65■□□□□ 0.9
RNF4P78317 SLC35A2-210ENST00000616181 1614 ntTSL 2 BASIC20.65■□□□□ 0.9
RNF4P78317 THOC6-202ENST00000326266 1419 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
RNF4P78317 MIR4767-201ENST00000582827 78 ntBASIC20.65■□□□□ 0.9
RNF4P78317 AC136469.2-201ENST00000623944 1028 ntBASIC20.65■□□□□ 0.9
RNF4P78317 EEF1D-256ENST00000618139 2238 ntTSL 5 BASIC20.65■□□□□ 0.9
RNF4P78317 GPR161-203ENST00000367836 1983 ntTSL 2 BASIC20.65■□□□□ 0.9
RNF4P78317 AC011498.4-201ENST00000586020 1803 ntAPPRIS P1 TSL 2 BASIC20.64■□□□□ 0.9
RNF4P78317 BX088645.1-201ENST00000636699 1728 ntAPPRIS P1 TSL 5 BASIC20.64■□□□□ 0.9
RNF4P78317 DONSON-204ENST00000432378 1618 ntTSL 5 BASIC20.64■□□□□ 0.9
RNF4P78317 PRADC1-201ENST00000258083 1083 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
RNF4P78317 AP006621.1-201ENST00000532946 536 ntTSL 5 BASIC20.64■□□□□ 0.89
RNF4P78317 AC009097.2-201ENST00000562763 465 ntTSL 2 BASIC20.64■□□□□ 0.89
RNF4P78317 AC005837.3-201ENST00000612163 286 ntBASIC20.64■□□□□ 0.89
RNF4P78317 AC092068.2-201ENST00000590491 1708 ntBASIC20.64■□□□□ 0.89
RNF4P78317 TIMM50-201ENST00000314349 1612 ntAPPRIS P2 TSL 1 (best) BASIC20.64■□□□□ 0.89
RNF4P78317 PTH1R-207ENST00000449590 2123 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
RNF4P78317 SRXN1-201ENST00000381962 2698 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
RNF4P78317 TBX1-202ENST00000332710 2084 ntAPPRIS P4 TSL 1 (best) BASIC20.63■□□□□ 0.89
RNF4P78317 SOHLH1-201ENST00000298466 1987 ntAPPRIS P3 TSL 1 (best) BASIC20.63■□□□□ 0.89
RNF4P78317 PACRGL-201ENST00000295290 1937 ntTSL 5 BASIC20.63■□□□□ 0.89
RNF4P78317 EDA-201ENST00000338901 1233 ntBASIC20.63■□□□□ 0.89
RNF4P78317 AC096887.1-203ENST00000607203 768 ntAPPRIS ALT2 TSL 5 BASIC20.63■□□□□ 0.89
RNF4P78317 LAYN-209ENST00000533265 1703 ntTSL 5 BASIC20.63■□□□□ 0.89
RNF4P78317 DYRK3-203ENST00000367109 2163 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
RNF4P78317 ZBTB45-205ENST00000600990 2159 ntAPPRIS P1 TSL 5 BASIC20.63■□□□□ 0.89
RNF4P78317 POLD2-207ENST00000452185 1659 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
RNF4P78317 NUDT18-201ENST00000611621 1497 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
RNF4P78317 TMEM44-202ENST00000347147 2245 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
RNF4P78317 TNFRSF10B-202ENST00000347739 1723 ntAPPRIS ALT2 TSL 1 (best) BASIC20.62■□□□□ 0.89
RNF4P78317 GFOD1-204ENST00000603223 2388 ntTSL 2 BASIC20.62■□□□□ 0.89
RNF4P78317 NDUFV2-201ENST00000318388 930 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
RNF4P78317 MLF2-206ENST00000539187 1110 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
RNF4P78317 BLOC1S4-201ENST00000320776 1617 ntAPPRIS P1 BASIC20.62■□□□□ 0.89
RNF4P78317 TMEM230-205ENST00000379279 1636 ntAPPRIS P1 TSL 2 BASIC20.62■□□□□ 0.89
RNF4P78317 DIXDC1-205ENST00000529225 1945 ntTSL 5 BASIC20.62■□□□□ 0.89
RNF4P78317 ZNF213-208ENST00000576416 2240 ntAPPRIS P1 TSL 2 BASIC20.62■□□□□ 0.89
RNF4P78317 AC133637.1-201ENST00000624115 1537 ntBASIC20.62■□□□□ 0.89
RNF4P78317 TBL1X-201ENST00000217964 5871 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
RNF4P78317 SRI-201ENST00000265729 2010 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
RNF4P78317 PRSS22-201ENST00000161006 1386 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
RNF4P78317 HAUS7-202ENST00000370211 1363 ntAPPRIS P2 TSL 1 (best) BASIC20.61■□□□□ 0.89
RNF4P78317 GIT1-210ENST00000579937 2798 ntTSL 2 BASIC20.61■□□□□ 0.89
RNF4P78317 DENND1B-204ENST00000367396 2177 ntAPPRIS P3 TSL 1 (best) BASIC20.61■□□□□ 0.89
RNF4P78317 PYCARD-201ENST00000247470 990 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
RNF4P78317 STOX1-202ENST00000399162 935 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
RNF4P78317 STOX1-203ENST00000399165 1135 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
RNF4P78317 AC105935.1-201ENST00000424174 422 ntTSL 3 BASIC20.61■□□□□ 0.89
RNF4P78317 FAM66C-205ENST00000456135 1216 ntTSL 5 BASIC20.61■□□□□ 0.89
RNF4P78317 NRIP3-203ENST00000531090 980 ntTSL 2 BASIC20.61■□□□□ 0.89
RNF4P78317 FAM174B-207ENST00000555748 866 ntAPPRIS ALT2 TSL 3 BASIC20.61■□□□□ 0.89
RNF4P78317 SNAI3-AS1-201ENST00000563261 998 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
RNF4P78317 C17orf74-202ENST00000574034 1287 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
RNF4P78317 AC007448.3-201ENST00000585193 689 ntTSL 2 BASIC20.61■□□□□ 0.89
RNF4P78317 AL355001.2-201ENST00000620617 1191 ntBASIC20.61■□□□□ 0.89
RNF4P78317 HRH3-202ENST00000340177 2659 ntAPPRIS P2 TSL 1 (best) BASIC20.61■□□□□ 0.89
RNF4P78317 LINC01578-209ENST00000557682 2683 ntTSL 2 BASIC20.61■□□□□ 0.89
RNF4P78317 IMPDH1-210ENST00000480861 1765 ntAPPRIS P2 TSL 2 BASIC20.61■□□□□ 0.89
RNF4P78317 HOXB7-201ENST00000239165 1371 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
RNF4P78317 LLGL2-202ENST00000375227 1374 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
RNF4P78317 TRAP1-202ENST00000538171 2052 ntTSL 2 BASIC20.6■□□□□ 0.89
RNF4P78317 PLPP1-201ENST00000264775 1550 ntAPPRIS P4 TSL 1 (best) BASIC20.6■□□□□ 0.89
RNF4P78317 RNPEP-202ENST00000367286 2282 ntTSL 5 BASIC20.6■□□□□ 0.89
RNF4P78317 MEIOB-202ENST00000397344 1792 ntTSL 5 BASIC20.6■□□□□ 0.89
RNF4P78317 HYI-204ENST00000372432 1066 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
RNF4P78317 AL031432.3-201ENST00000607698 485 ntBASIC20.6■□□□□ 0.89
RNF4P78317 GRAMD4P4-201ENST00000613563 1115 ntBASIC20.6■□□□□ 0.89
RNF4P78317 SAP25-203ENST00000614631 987 ntAPPRIS P2 TSL 2 BASIC20.6■□□□□ 0.89
RNF4P78317 SCUBE1-208ENST00000615096 1119 ntTSL 2 BASIC20.6■□□□□ 0.89
RNF4P78317 CBWD3-212ENST00000616550 721 ntTSL 2 BASIC20.6■□□□□ 0.89
RNF4P78317 NEDD4L-237ENST00000617539 728 ntTSL 2 BASIC20.6■□□□□ 0.89
RNF4P78317 CBWD6-216ENST00000617933 721 ntTSL 3 BASIC20.6■□□□□ 0.89
RNF4P78317 SRRM2-231ENST00000630499 1207 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
RNF4P78317 BAG1-212ENST00000641048 1038 ntAPPRIS P3 BASIC20.6■□□□□ 0.89
RNF4P78317 ROGDI-201ENST00000322048 1735 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
RNF4P78317 RAX2-202ENST00000555978 2145 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
RNF4P78317 PEBP1-201ENST00000261313 1697 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Retrieved 100 of 98,524 protein–RNA pairs in 25.4 ms