Protein–RNA interactions for Protein: O00257

CBX4, E3 SUMO-protein ligase CBX4, humanhuman

Predictions only

Length 560 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CBX4O00257 GTSE1-AS1-202ENST00000623117 1518 ntBASIC22.81■■□□□ 1.24
CBX4O00257 EEF1D-256ENST00000618139 2238 ntTSL 5 BASIC22.81■■□□□ 1.24
CBX4O00257 AKT1S1-204ENST00000391832 1911 ntAPPRIS P1 TSL 1 (best) BASIC22.8■■□□□ 1.24
CBX4O00257 PRSS56-201ENST00000449534 2157 ntAPPRIS ALT2 TSL 5 BASIC22.8■■□□□ 1.24
CBX4O00257 PRSS56-203ENST00000617714 2158 ntAPPRIS P2 TSL 5 BASIC22.8■■□□□ 1.24
CBX4O00257 COMT-206ENST00000407537 1457 ntAPPRIS P3 TSL 5 BASIC22.8■■□□□ 1.24
CBX4O00257 ZC3H14-219ENST00000556945 2075 ntTSL 5 BASIC22.8■■□□□ 1.24
CBX4O00257 WISP2-203ENST00000372868 1600 ntAPPRIS P1 TSL 3 BASIC22.8■■□□□ 1.24
CBX4O00257 EBPL-204ENST00000378272 766 ntTSL 3 BASIC22.8■■□□□ 1.24
CBX4O00257 ZNF264-206ENST00000600531 774 ntTSL 2 BASIC22.8■■□□□ 1.24
CBX4O00257 AL138724.1-201ENST00000606771 1088 ntBASIC22.8■■□□□ 1.24
CBX4O00257 TBX1-203ENST00000359500 1538 ntAPPRIS ALT2 TSL 1 (best) BASIC22.8■■□□□ 1.24
CBX4O00257 SNX10-207ENST00000446848 2613 ntAPPRIS P2 TSL 1 (best) BASIC22.8■■□□□ 1.24
CBX4O00257 ANOS2P-203ENST00000472227 1816 ntBASIC22.8■■□□□ 1.24
CBX4O00257 PYGO2-201ENST00000368456 1306 ntTSL 2 BASIC22.8■■□□□ 1.24
CBX4O00257 SLC30A5-201ENST00000380860 1317 ntTSL 1 (best) BASIC22.8■■□□□ 1.24
CBX4O00257 MMD-201ENST00000262065 2735 ntAPPRIS P1 TSL 1 (best) BASIC22.8■■□□□ 1.24
CBX4O00257 FAM47E-201ENST00000424749 1484 ntAPPRIS P3 TSL 5 BASIC22.79■■□□□ 1.24
CBX4O00257 P2RX4-211ENST00000543171 1777 ntTSL 5 BASIC22.79■■□□□ 1.24
CBX4O00257 RNF19B-202ENST00000356990 2598 ntTSL 1 (best) BASIC22.79■■□□□ 1.24
CBX4O00257 NAE1-204ENST00000394074 1654 ntTSL 5 BASIC22.79■■□□□ 1.24
CBX4O00257 MRPL41-201ENST00000371443 1262 ntAPPRIS P1 TSL 1 (best) BASIC22.79■■□□□ 1.24
CBX4O00257 HES6-206ENST00000409574 738 ntTSL 2 BASIC22.79■■□□□ 1.24
CBX4O00257 AL355987.3-201ENST00000456614 735 ntAPPRIS P1 TSL 4 BASIC22.79■■□□□ 1.24
CBX4O00257 AC009097.2-201ENST00000562763 465 ntTSL 2 BASIC22.79■■□□□ 1.24
CBX4O00257 DUX4L4-201ENST00000566884 1269 ntBASIC22.79■■□□□ 1.24
CBX4O00257 PKM-204ENST00000449901 2526 ntTSL 2 BASIC22.79■■□□□ 1.24
CBX4O00257 PKIB-204ENST00000368448 1561 ntAPPRIS P1 TSL 5 BASIC22.79■■□□□ 1.24
CBX4O00257 RNPEP-202ENST00000367286 2282 ntTSL 5 BASIC22.79■■□□□ 1.24
CBX4O00257 SYF2-201ENST00000236273 1345 ntAPPRIS P1 TSL 1 (best) BASIC22.79■■□□□ 1.24
CBX4O00257 CDX1-201ENST00000231656 1758 ntAPPRIS P1 TSL 1 (best) BASIC22.78■■□□□ 1.24
CBX4O00257 CACNA1H-201ENST00000348261 8208 ntAPPRIS P4 TSL 1 (best) BASIC22.78■■□□□ 1.24
CBX4O00257 TMEM44-202ENST00000347147 2245 ntAPPRIS P1 TSL 1 (best) BASIC22.78■■□□□ 1.24
CBX4O00257 CENPH-201ENST00000283006 1389 ntAPPRIS P1 TSL 1 (best) BASIC22.78■■□□□ 1.24
CBX4O00257 ENKD1-206ENST00000602644 1353 ntTSL 5 BASIC22.78■■□□□ 1.24
CBX4O00257 NECTIN2-202ENST00000252485 2112 ntAPPRIS P3 TSL 1 (best) BASIC22.78■■□□□ 1.24
CBX4O00257 DYRK3-203ENST00000367109 2163 ntAPPRIS P1 TSL 1 (best) BASIC22.78■■□□□ 1.24
CBX4O00257 PTMA-205ENST00000410064 814 ntTSL 2 BASIC22.78■■□□□ 1.24
CBX4O00257 RALB-203ENST00000420510 1252 ntAPPRIS P1 TSL 2 BASIC22.78■■□□□ 1.24
CBX4O00257 LINC00472-204ENST00000436803 667 ntTSL 5 BASIC22.78■■□□□ 1.24
CBX4O00257 AL359317.1-201ENST00000556316 578 ntTSL 4 BASIC22.78■■□□□ 1.24
CBX4O00257 SYNGR3-202ENST00000562045 1743 ntTSL 2 BASIC22.78■■□□□ 1.24
CBX4O00257 AC011298.3-201ENST00000615796 283 ntBASIC22.78■■□□□ 1.24
CBX4O00257 DSG2-201ENST00000261590 5831 ntAPPRIS P1 TSL 1 (best) BASIC22.78■■□□□ 1.24
CBX4O00257 TBX1-202ENST00000332710 2084 ntAPPRIS P4 TSL 1 (best) BASIC22.78■■□□□ 1.24
CBX4O00257 AL353803.4-201ENST00000565882 1934 ntBASIC22.78■■□□□ 1.24
CBX4O00257 PTH1R-207ENST00000449590 2123 ntAPPRIS P1 TSL 1 (best) BASIC22.78■■□□□ 1.24
CBX4O00257 HAGHL-212ENST00000564537 1667 ntTSL 2 BASIC22.77■■□□□ 1.24
CBX4O00257 TMEM268-202ENST00000374049 4578 ntAPPRIS ALT1 TSL 5 BASIC22.77■■□□□ 1.24
CBX4O00257 NIPSNAP2-205ENST00000446778 1882 ntTSL 2 BASIC22.77■■□□□ 1.24
CBX4O00257 ACAD8-202ENST00000374752 1797 ntTSL 2 BASIC22.77■■□□□ 1.24
CBX4O00257 AC142381.2-201ENST00000566120 298 ntBASIC22.77■■□□□ 1.24
CBX4O00257 MIR4767-201ENST00000582827 78 ntBASIC22.77■■□□□ 1.24
CBX4O00257 WTAP-201ENST00000337387 1622 ntTSL 1 (best) BASIC22.77■■□□□ 1.24
CBX4O00257 SH3RF3-AS1-201ENST00000567491 1604 ntBASIC22.77■■□□□ 1.24
CBX4O00257 ARSB-202ENST00000396151 2316 ntTSL 1 (best) BASIC22.77■■□□□ 1.24
CBX4O00257 ZBTB45-205ENST00000600990 2159 ntAPPRIS P1 TSL 5 BASIC22.77■■□□□ 1.24
CBX4O00257 C1QTNF4-201ENST00000302514 1664 ntAPPRIS P1 TSL 1 (best) BASIC22.77■■□□□ 1.24
CBX4O00257 CCDC47-204ENST00000582252 1719 ntTSL 2 BASIC22.77■■□□□ 1.23
CBX4O00257 NR2F1-AS1-210ENST00000606739 1431 ntTSL 2 BASIC22.76■■□□□ 1.23
CBX4O00257 MRPL38-201ENST00000309352 1888 ntAPPRIS P1 TSL 1 (best) BASIC22.76■■□□□ 1.23
CBX4O00257 CCDC157-202ENST00000399824 1759 ntAPPRIS ALT2 TSL 1 (best) BASIC22.76■■□□□ 1.23
CBX4O00257 FAM53B-201ENST00000280780 1568 ntTSL 1 (best) BASIC22.76■■□□□ 1.23
CBX4O00257 MYBL1-204ENST00000522677 5192 ntAPPRIS P1 TSL 1 (best) BASIC22.76■■□□□ 1.23
CBX4O00257 AC011498.4-201ENST00000586020 1803 ntAPPRIS P1 TSL 2 BASIC22.75■■□□□ 1.23
CBX4O00257 CLEC14A-201ENST00000342213 2267 ntAPPRIS P1 BASIC22.75■■□□□ 1.23
CBX4O00257 P3H3-201ENST00000290510 2632 ntAPPRIS P1 TSL 1 (best) BASIC22.75■■□□□ 1.23
CBX4O00257 AC004707.1-201ENST00000511627 715 ntTSL 3 BASIC22.75■■□□□ 1.23
CBX4O00257 SOHLH1-201ENST00000298466 1987 ntAPPRIS P3 TSL 1 (best) BASIC22.75■■□□□ 1.23
CBX4O00257 CDC16-203ENST00000356221 2203 ntAPPRIS P3 TSL 1 (best) BASIC22.75■■□□□ 1.23
CBX4O00257 RNASEH2B-201ENST00000336617 1629 ntAPPRIS P1 TSL 1 (best) BASIC22.75■■□□□ 1.23
CBX4O00257 RAX2-202ENST00000555978 2145 ntAPPRIS P1 TSL 1 (best) BASIC22.75■■□□□ 1.23
CBX4O00257 SLC35A2-210ENST00000616181 1614 ntTSL 2 BASIC22.75■■□□□ 1.23
CBX4O00257 ZNF213-208ENST00000576416 2240 ntAPPRIS P1 TSL 2 BASIC22.74■■□□□ 1.23
CBX4O00257 TRAP1-202ENST00000538171 2052 ntTSL 2 BASIC22.74■■□□□ 1.23
CBX4O00257 AP006621.1-201ENST00000532946 536 ntTSL 5 BASIC22.74■■□□□ 1.23
CBX4O00257 RARRES2P6-201ENST00000567333 442 ntBASIC22.74■■□□□ 1.23
CBX4O00257 AC096887.1-203ENST00000607203 768 ntAPPRIS ALT2 TSL 5 BASIC22.74■■□□□ 1.23
CBX4O00257 GPR161-203ENST00000367836 1983 ntTSL 2 BASIC22.74■■□□□ 1.23
CBX4O00257 PRSS22-201ENST00000161006 1386 ntAPPRIS P1 TSL 1 (best) BASIC22.74■■□□□ 1.23
CBX4O00257 SRI-201ENST00000265729 2010 ntAPPRIS P1 TSL 1 (best) BASIC22.74■■□□□ 1.23
CBX4O00257 DENND1B-204ENST00000367396 2177 ntAPPRIS P3 TSL 1 (best) BASIC22.73■■□□□ 1.23
CBX4O00257 PACRGL-201ENST00000295290 1937 ntTSL 5 BASIC22.73■■□□□ 1.23
CBX4O00257 ERF-201ENST00000222329 2698 ntAPPRIS P1 TSL 1 (best) BASIC22.73■■□□□ 1.23
CBX4O00257 TIMM50-201ENST00000314349 1612 ntAPPRIS P2 TSL 1 (best) BASIC22.73■■□□□ 1.23
CBX4O00257 DONSON-204ENST00000432378 1618 ntTSL 5 BASIC22.73■■□□□ 1.23
CBX4O00257 FAM66C-205ENST00000456135 1216 ntTSL 5 BASIC22.73■■□□□ 1.23
CBX4O00257 AC007009.1-201ENST00000458624 429 ntTSL 2 BASIC22.73■■□□□ 1.23
CBX4O00257 RASGEF1B-208ENST00000510780 539 ntTSL 3 BASIC22.73■■□□□ 1.23
CBX4O00257 RASGEF1B-209ENST00000512343 498 ntTSL 3 BASIC22.73■■□□□ 1.23
CBX4O00257 AC136469.2-201ENST00000623944 1028 ntBASIC22.73■■□□□ 1.23
CBX4O00257 HAUS7-202ENST00000370211 1363 ntAPPRIS P2 TSL 1 (best) BASIC22.73■■□□□ 1.23
CBX4O00257 LLGL2-202ENST00000375227 1374 ntTSL 1 (best) BASIC22.73■■□□□ 1.23
CBX4O00257 IMPDH1-210ENST00000480861 1765 ntAPPRIS P2 TSL 2 BASIC22.73■■□□□ 1.23
CBX4O00257 THOC6-202ENST00000326266 1419 ntAPPRIS P1 TSL 1 (best) BASIC22.73■■□□□ 1.23
CBX4O00257 POLD2-207ENST00000452185 1659 ntAPPRIS P1 TSL 1 (best) BASIC22.72■■□□□ 1.23
CBX4O00257 LAYN-209ENST00000533265 1703 ntTSL 5 BASIC22.72■■□□□ 1.23
CBX4O00257 BX088645.1-201ENST00000636699 1728 ntAPPRIS P1 TSL 5 BASIC22.72■■□□□ 1.23
CBX4O00257 ADGRA2-202ENST00000412232 5651 ntAPPRIS P1 TSL 1 (best) BASIC22.72■■□□□ 1.23
CBX4O00257 PRADC1-201ENST00000258083 1083 ntAPPRIS P1 TSL 1 (best) BASIC22.72■■□□□ 1.23
Retrieved 100 of 98,524 protein–RNA pairs in 18 ms