Protein–RNA interactions for Protein: O00151

PDLIM1, PDZ and LIM domain protein 1, humanhuman

Predictions only

Length 329 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM1O00151 SIX3-201ENST00000260653 2523 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
PDLIM1O00151 ARL6IP4-210ENST00000453766 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC21.15■□□□□ 0.98
PDLIM1O00151 PRRX2-201ENST00000372469 1311 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
PDLIM1O00151 SAMD10-201ENST00000369886 2181 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
PDLIM1O00151 FAM98C-202ENST00000343358 1006 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
PDLIM1O00151 PYY2-202ENST00000441253 1076 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
PDLIM1O00151 LMAN2-208ENST00000515209 1149 ntAPPRIS ALT2 TSL 3 BASIC21.15■□□□□ 0.98
PDLIM1O00151 AC104002.3-202ENST00000557170 1100 ntTSL 3 BASIC21.15■□□□□ 0.98
PDLIM1O00151 LINC01233-202ENST00000598832 568 ntTSL 2 BASIC21.15■□□□□ 0.98
PDLIM1O00151 ZMAT3-203ENST00000432729 2944 ntAPPRIS ALT1 TSL 2 BASIC21.15■□□□□ 0.98
PDLIM1O00151 DLL3-202ENST00000356433 2055 ntAPPRIS P1 TSL 2 BASIC21.15■□□□□ 0.98
PDLIM1O00151 ZDHHC5-204ENST00000527985 2817 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
PDLIM1O00151 HMX2-201ENST00000339992 1628 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
PDLIM1O00151 UBC-201ENST00000339647 2688 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
PDLIM1O00151 APLP1-203ENST00000586861 2052 ntTSL 2 BASIC21.14■□□□□ 0.98
PDLIM1O00151 ZDHHC8P1-201ENST00000255890 2382 ntTSL 2 BASIC21.14■□□□□ 0.97
PDLIM1O00151 LINC01770-201ENST00000417917 634 ntTSL 2 BASIC21.14■□□□□ 0.97
PDLIM1O00151 AC139795.1-203ENST00000515045 853 ntTSL 2 BASIC21.14■□□□□ 0.97
PDLIM1O00151 ERFE-207ENST00000546354 1065 ntAPPRIS P2 TSL 1 (best) BASIC21.14■□□□□ 0.97
PDLIM1O00151 AC064853.2-201ENST00000641246 144 ntAPPRIS P1 BASIC21.14■□□□□ 0.97
PDLIM1O00151 SLIT1-203ENST00000371041 1695 ntTSL 2 BASIC21.14■□□□□ 0.97
PDLIM1O00151 SPHK1-201ENST00000323374 2138 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
PDLIM1O00151 GPR161-203ENST00000367836 1983 ntTSL 2 BASIC21.14■□□□□ 0.97
PDLIM1O00151 SOS2-201ENST00000216373 5498 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
PDLIM1O00151 TCEA1-211ENST00000522635 1432 ntTSL 2 BASIC21.13■□□□□ 0.97
PDLIM1O00151 MSANTD3-207ENST00000622639 1748 ntAPPRIS P1 TSL 3 BASIC21.13■□□□□ 0.97
PDLIM1O00151 ZFAND2B-201ENST00000289528 1314 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
PDLIM1O00151 TMEM191C-206ENST00000432134 1129 ntAPPRIS ALT2 TSL 5 BASIC21.13■□□□□ 0.97
PDLIM1O00151 AC116025.2-201ENST00000576632 443 ntTSL 3 BASIC21.13■□□□□ 0.97
PDLIM1O00151 LRRC14B-201ENST00000328278 1573 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
PDLIM1O00151 NAT14-201ENST00000205194 1536 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
PDLIM1O00151 SOAT2-201ENST00000301466 2044 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
PDLIM1O00151 GRK4-201ENST00000345167 2013 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
PDLIM1O00151 RNF39-202ENST00000376751 1970 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
PDLIM1O00151 RNF149-201ENST00000295317 2458 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
PDLIM1O00151 MRPL23-202ENST00000381519 643 ntAPPRIS P1 TSL 3 BASIC21.12■□□□□ 0.97
PDLIM1O00151 KRT18P10-201ENST00000388836 1287 ntBASIC21.12■□□□□ 0.97
PDLIM1O00151 MRPL23-205ENST00000397298 736 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
PDLIM1O00151 ACOT1-202ENST00000557556 1271 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
PDLIM1O00151 TBX2-AS1-203ENST00000590421 861 ntTSL 2 BASIC21.12■□□□□ 0.97
PDLIM1O00151 TCEA1-213ENST00000640041 1171 ntTSL 5 BASIC21.12■□□□□ 0.97
PDLIM1O00151 GABBR2-201ENST00000259455 5788 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
PDLIM1O00151 INAFM2-202ENST00000638170 3052 ntAPPRIS P1 BASIC21.12■□□□□ 0.97
PDLIM1O00151 IFNGR2-202ENST00000381995 1742 ntAPPRIS ALT2 TSL 5 BASIC21.12■□□□□ 0.97
PDLIM1O00151 ANKRD9-204ENST00000559651 1444 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
PDLIM1O00151 AC005906.2-202ENST00000638821 2168 ntTSL 5 BASIC21.12■□□□□ 0.97
PDLIM1O00151 MROH6-202ENST00000524906 1794 ntAPPRIS ALT2 TSL 3 BASIC21.11■□□□□ 0.97
PDLIM1O00151 FAM193B-217ENST00000514747 2913 ntAPPRIS P1 TSL 5 BASIC21.11■□□□□ 0.97
PDLIM1O00151 HMGA2-203ENST00000393578 1993 ntAPPRIS ALT1 TSL 1 (best) BASIC21.11■□□□□ 0.97
PDLIM1O00151 MZT2B-201ENST00000281871 933 ntAPPRIS P3 TSL 1 (best) BASIC21.11■□□□□ 0.97
PDLIM1O00151 MZT2A-201ENST00000309451 624 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
PDLIM1O00151 AC087393.1-201ENST00000582896 145 ntBASIC21.11■□□□□ 0.97
PDLIM1O00151 DSG2-202ENST00000585206 1081 ntTSL 2 BASIC21.11■□□□□ 0.97
PDLIM1O00151 CASTOR2-201ENST00000616305 1257 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
PDLIM1O00151 SPRN-201ENST00000414069 3128 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
PDLIM1O00151 AF106564.1-201ENST00000607058 2553 ntBASIC21.11■□□□□ 0.97
PDLIM1O00151 ADAD2-201ENST00000268624 2283 ntAPPRIS P3 TSL 2 BASIC21.11■□□□□ 0.97
PDLIM1O00151 AC242852.2-201ENST00000615738 1807 ntBASIC21.11■□□□□ 0.97
PDLIM1O00151 CLDN5-203ENST00000413119 1760 ntTSL 2 BASIC21.1■□□□□ 0.97
PDLIM1O00151 GFI1-201ENST00000294702 2784 ntAPPRIS P1 TSL 2 BASIC21.1■□□□□ 0.97
PDLIM1O00151 RBFA-201ENST00000262197 1219 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
PDLIM1O00151 RPS2P7-201ENST00000447334 885 ntBASIC21.1■□□□□ 0.97
PDLIM1O00151 SMKR1-201ENST00000462322 1035 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
PDLIM1O00151 LINC01123-202ENST00000419296 2436 ntTSL 2 BASIC21.1■□□□□ 0.97
PDLIM1O00151 FAM20C-201ENST00000313766 2751 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
PDLIM1O00151 RABL6-204ENST00000371671 1580 ntAPPRIS ALT2 TSL 1 (best) BASIC21.1■□□□□ 0.97
PDLIM1O00151 SOX21-201ENST00000376945 2778 ntAPPRIS P1 BASIC21.09■□□□□ 0.97
PDLIM1O00151 ACVRL1-201ENST00000388922 1971 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
PDLIM1O00151 FGD5-AS1-204ENST00000430166 1184 ntTSL 2 BASIC21.09■□□□□ 0.97
PDLIM1O00151 GLT1D1-204ENST00000442111 2995 ntAPPRIS P1 TSL 5 BASIC21.09■□□□□ 0.97
PDLIM1O00151 LMF1-202ENST00000543238 2103 ntTSL 2 BASIC21.09■□□□□ 0.97
PDLIM1O00151 ATXN3-252ENST00000620536 1044 ntTSL 5 BASIC21.09■□□□□ 0.97
PDLIM1O00151 ATXN3-253ENST00000621269 936 ntTSL 5 BASIC21.09■□□□□ 0.97
PDLIM1O00151 MXRA7-201ENST00000355797 5661 ntAPPRIS P4 TSL 2 BASIC21.09■□□□□ 0.97
PDLIM1O00151 TSPAN4-203ENST00000397397 1423 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
PDLIM1O00151 AL022341.2-201ENST00000573609 1417 ntTSL 3 BASIC21.09■□□□□ 0.97
PDLIM1O00151 WDR86-208ENST00000628331 1905 ntTSL 5 BASIC21.09■□□□□ 0.97
PDLIM1O00151 AP006623.1-201ENST00000506172 2061 ntTSL 5 BASIC21.09■□□□□ 0.97
PDLIM1O00151 PSPH-202ENST00000395471 2178 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
PDLIM1O00151 MVD-201ENST00000301012 1823 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
PDLIM1O00151 RNPEP-201ENST00000295640 2427 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
PDLIM1O00151 TMEM260-202ENST00000538838 1638 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
PDLIM1O00151 IMPDH1-210ENST00000480861 1765 ntAPPRIS P2 TSL 2 BASIC21.08■□□□□ 0.97
PDLIM1O00151 DCTD-201ENST00000357067 1931 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
PDLIM1O00151 FAM66C-208ENST00000541558 2087 ntTSL 2 BASIC21.08■□□□□ 0.97
PDLIM1O00151 CBLN3-201ENST00000267406 2346 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
PDLIM1O00151 TANGO2-207ENST00000420290 1859 ntTSL 2 BASIC21.08■□□□□ 0.97
PDLIM1O00151 AL354928.1-201ENST00000438380 617 ntTSL 2 BASIC21.08■□□□□ 0.97
PDLIM1O00151 AF117829.1-207ENST00000504145 1572 ntTSL 3 BASIC21.08■□□□□ 0.97
PDLIM1O00151 ILDR2-208ENST00000529387 1238 ntTSL 5 BASIC21.08■□□□□ 0.97
PDLIM1O00151 UBE2J2-201ENST00000347370 2387 ntTSL 3 BASIC21.08■□□□□ 0.96
PDLIM1O00151 GPSM1-204ENST00000429455 2057 ntTSL 3 BASIC21.08■□□□□ 0.96
PDLIM1O00151 TRIM46-204ENST00000368385 1864 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
PDLIM1O00151 C6orf201-202ENST00000380175 1834 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
PDLIM1O00151 METTL24-201ENST00000338882 1119 ntAPPRIS P1 TSL 5 BASIC21.07■□□□□ 0.96
PDLIM1O00151 PTH1R-202ENST00000418619 2070 ntAPPRIS P1 TSL 5 BASIC21.07■□□□□ 0.96
PDLIM1O00151 FDFT1-201ENST00000220584 2176 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
PDLIM1O00151 UBE3C-209ENST00000611269 1866 ntTSL 2 BASIC21.07■□□□□ 0.96
PDLIM1O00151 TAF6L-201ENST00000294168 2116 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
PDLIM1O00151 ADCK2-203ENST00000476491 2092 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
Retrieved 100 of 98,524 protein–RNA pairs in 33.2 ms