Protein–RNA interactions for Protein: E9PIF3

NPIPA2, Nuclear pore complex-interacting protein family member A2, humanhuman

Predictions only

Length 369 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPIPA2E9PIF3 PPP2R2C-203ENST00000382599 1807 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
NPIPA2E9PIF3 CNTFR-201ENST00000351266 1910 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
NPIPA2E9PIF3 FXYD3-201ENST00000344013 1404 ntTSL 5 BASIC20.29■□□□□ 0.84
NPIPA2E9PIF3 PTH1R-201ENST00000313049 2123 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
NPIPA2E9PIF3 TBX1-203ENST00000359500 1538 ntAPPRIS ALT2 TSL 1 (best) BASIC20.29■□□□□ 0.84
NPIPA2E9PIF3 SPG21-202ENST00000416889 1533 ntTSL 2 BASIC20.29■□□□□ 0.84
NPIPA2E9PIF3 KCNQ5-205ENST00000370398 6345 ntAPPRIS P3 TSL 1 (best) BASIC20.29■□□□□ 0.84
NPIPA2E9PIF3 TRIR-201ENST00000242784 970 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
NPIPA2E9PIF3 AP2S1-201ENST00000263270 935 ntAPPRIS P3 TSL 1 (best) BASIC20.29■□□□□ 0.84
NPIPA2E9PIF3 STOX1-202ENST00000399162 935 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
NPIPA2E9PIF3 STOX1-203ENST00000399165 1135 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
NPIPA2E9PIF3 MIR3181-201ENST00000578512 73 ntBASIC20.29■□□□□ 0.84
NPIPA2E9PIF3 ACBD4-216ENST00000619916 1276 ntTSL 5 BASIC20.29■□□□□ 0.84
NPIPA2E9PIF3 MCUB-201ENST00000394650 2278 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
NPIPA2E9PIF3 CTSF-201ENST00000310325 2035 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
NPIPA2E9PIF3 SYF2-201ENST00000236273 1345 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
NPIPA2E9PIF3 AC091230.1-202ENST00000564823 5356 ntTSL 2 BASIC20.28■□□□□ 0.84
NPIPA2E9PIF3 RBM38-205ENST00000440234 686 ntTSL 2 BASIC20.28■□□□□ 0.84
NPIPA2E9PIF3 AC010336.5-201ENST00000594308 317 ntTSL 3 BASIC20.28■□□□□ 0.84
NPIPA2E9PIF3 AC136469.2-201ENST00000623944 1028 ntBASIC20.28■□□□□ 0.84
NPIPA2E9PIF3 TRIOBP-203ENST00000403663 2324 ntAPPRIS ALT2 TSL 1 (best) BASIC20.28■□□□□ 0.84
NPIPA2E9PIF3 GATS-205ENST00000436886 2726 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
NPIPA2E9PIF3 NPAS1-208ENST00000602212 2117 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
NPIPA2E9PIF3 RAB11FIP1-203ENST00000522727 1866 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
NPIPA2E9PIF3 FUS-210ENST00000568685 1785 ntAPPRIS ALT2 TSL 5 BASIC20.27■□□□□ 0.84
NPIPA2E9PIF3 METTL21A-210ENST00000458426 1366 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
NPIPA2E9PIF3 SRM-201ENST00000376957 1266 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
NPIPA2E9PIF3 AC099791.1-201ENST00000416440 715 ntBASIC20.27■□□□□ 0.84
NPIPA2E9PIF3 NRIP3-203ENST00000531090 980 ntTSL 2 BASIC20.27■□□□□ 0.84
NPIPA2E9PIF3 GJD3-201ENST00000578689 885 ntAPPRIS P1 BASIC20.27■□□□□ 0.84
NPIPA2E9PIF3 ZNF846-212ENST00000592859 1206 ntTSL 2 BASIC20.27■□□□□ 0.84
NPIPA2E9PIF3 pRNA.6-201ENST00000610482 90 ntBASIC20.27■□□□□ 0.84
NPIPA2E9PIF3 pRNA.5-201ENST00000612139 90 ntBASIC20.27■□□□□ 0.84
NPIPA2E9PIF3 pRNA.11-201ENST00000618423 90 ntBASIC20.27■□□□□ 0.84
NPIPA2E9PIF3 pRNA.13-201ENST00000619112 90 ntBASIC20.27■□□□□ 0.84
NPIPA2E9PIF3 NECTIN2-202ENST00000252485 2112 ntAPPRIS P3 TSL 1 (best) BASIC20.27■□□□□ 0.84
NPIPA2E9PIF3 PCOLCE2-201ENST00000295992 2021 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
NPIPA2E9PIF3 MADCAM1-205ENST00000613880 1509 ntAPPRIS ALT2 TSL 5 BASIC20.27■□□□□ 0.83
NPIPA2E9PIF3 THRA-202ENST00000394121 2260 ntTSL 2 BASIC20.27■□□□□ 0.83
NPIPA2E9PIF3 UROS-204ENST00000368797 1313 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.83
NPIPA2E9PIF3 PKM-204ENST00000449901 2526 ntTSL 2 BASIC20.26■□□□□ 0.83
NPIPA2E9PIF3 HYI-204ENST00000372432 1066 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
NPIPA2E9PIF3 AC007009.1-201ENST00000458624 429 ntTSL 2 BASIC20.26■□□□□ 0.83
NPIPA2E9PIF3 C15orf61-202ENST00000557807 769 ntTSL 2 BASIC20.26■□□□□ 0.83
NPIPA2E9PIF3 CAPNS1-207ENST00000589146 578 ntTSL 3 BASIC20.26■□□□□ 0.83
NPIPA2E9PIF3 SAP25-203ENST00000614631 987 ntAPPRIS P2 TSL 2 BASIC20.26■□□□□ 0.83
NPIPA2E9PIF3 FOXK2-201ENST00000335255 5265 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
NPIPA2E9PIF3 BCL2L12-212ENST00000616144 1854 ntAPPRIS P3 TSL 1 (best) BASIC20.26■□□□□ 0.83
NPIPA2E9PIF3 HACD3-205ENST00000562901 1797 ntTSL 5 BASIC20.26■□□□□ 0.83
NPIPA2E9PIF3 HOXD4-201ENST00000306324 1464 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
NPIPA2E9PIF3 KBTBD13-201ENST00000432196 1377 ntAPPRIS P1 BASIC20.25■□□□□ 0.83
NPIPA2E9PIF3 CREB3L2-203ENST00000452463 1105 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
NPIPA2E9PIF3 RNF19B-202ENST00000356990 2598 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
NPIPA2E9PIF3 ID4-201ENST00000378700 2344 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
NPIPA2E9PIF3 AK8-201ENST00000298545 2072 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
NPIPA2E9PIF3 PPP1R1B-201ENST00000254079 1845 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
NPIPA2E9PIF3 SNX18-201ENST00000326277 2063 ntTSL 2 BASIC20.24■□□□□ 0.83
NPIPA2E9PIF3 AC026271.2-201ENST00000428091 497 ntBASIC20.24■□□□□ 0.83
NPIPA2E9PIF3 ACAP1-206ENST00000571471 320 ntTSL 2 BASIC20.24■□□□□ 0.83
NPIPA2E9PIF3 GSX2-205ENST00000611459 1262 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
NPIPA2E9PIF3 SLC25A29-201ENST00000359232 2385 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
NPIPA2E9PIF3 LGALS9B-202ENST00000423676 1713 ntAPPRIS ALT2 TSL 1 (best) BASIC20.24■□□□□ 0.83
NPIPA2E9PIF3 LSR-201ENST00000347609 1880 ntAPPRIS ALT2 TSL 1 (best) BASIC20.24■□□□□ 0.83
NPIPA2E9PIF3 LSR-213ENST00000605618 1885 ntAPPRIS ALT2 TSL 1 (best) BASIC20.24■□□□□ 0.83
NPIPA2E9PIF3 PPAN-201ENST00000253107 1657 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
NPIPA2E9PIF3 P4HA3-201ENST00000331597 2274 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
NPIPA2E9PIF3 NR2F6-201ENST00000291442 2404 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
NPIPA2E9PIF3 LBX2-202ENST00000377566 1186 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
NPIPA2E9PIF3 IFNGR2-202ENST00000381995 1742 ntAPPRIS ALT2 TSL 5 BASIC20.23■□□□□ 0.83
NPIPA2E9PIF3 AC007448.3-201ENST00000585193 689 ntTSL 2 BASIC20.23■□□□□ 0.83
NPIPA2E9PIF3 MYDGF-203ENST00000599630 713 ntTSL 2 BASIC20.23■□□□□ 0.83
NPIPA2E9PIF3 ST3GAL4-213ENST00000530591 1459 ntAPPRIS P3 TSL 1 (best) BASIC20.23■□□□□ 0.83
NPIPA2E9PIF3 ACP4-201ENST00000270593 1347 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
NPIPA2E9PIF3 PARP9-207ENST00000492382 1837 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
NPIPA2E9PIF3 PLEKHB1-201ENST00000227214 2016 ntAPPRIS ALT1 TSL 1 (best) BASIC20.22■□□□□ 0.83
NPIPA2E9PIF3 SDK1-201ENST00000389531 7606 ntAPPRIS ALT2 TSL 5 BASIC20.22■□□□□ 0.83
NPIPA2E9PIF3 AL353743.1-201ENST00000637846 1769 ntTSL 5 BASIC20.22■□□□□ 0.83
NPIPA2E9PIF3 MOSPD3-203ENST00000393950 1191 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
NPIPA2E9PIF3 FAM66C-205ENST00000456135 1216 ntTSL 5 BASIC20.22■□□□□ 0.83
NPIPA2E9PIF3 AP006621.3-202ENST00000530083 765 ntTSL 3 BASIC20.22■□□□□ 0.83
NPIPA2E9PIF3 PRSS22-203ENST00000571228 1037 ntTSL 2 BASIC20.22■□□□□ 0.83
NPIPA2E9PIF3 FAM222B-213ENST00000583522 556 ntTSL 2 BASIC20.22■□□□□ 0.83
NPIPA2E9PIF3 AC096887.1-203ENST00000607203 768 ntAPPRIS ALT2 TSL 5 BASIC20.22■□□□□ 0.83
NPIPA2E9PIF3 AC233992.3-201ENST00000607491 485 ntBASIC20.22■□□□□ 0.83
NPIPA2E9PIF3 TMEM44-202ENST00000347147 2245 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
NPIPA2E9PIF3 TTC39A-203ENST00000371747 1876 ntTSL 2 BASIC20.22■□□□□ 0.83
NPIPA2E9PIF3 OSCAR-211ENST00000617140 1547 ntAPPRIS ALT2 TSL 5 BASIC20.22■□□□□ 0.83
NPIPA2E9PIF3 LRRC75A-203ENST00000470794 1390 ntAPPRIS ALT2 TSL 1 (best) BASIC20.21■□□□□ 0.83
NPIPA2E9PIF3 CAMK2N1-201ENST00000375078 2336 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
NPIPA2E9PIF3 VSTM4-201ENST00000298454 2170 ntAPPRIS P3 TSL 2 BASIC20.21■□□□□ 0.83
NPIPA2E9PIF3 SNAI3-AS1-201ENST00000563261 998 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
NPIPA2E9PIF3 AC104564.5-201ENST00000584986 278 ntTSL 3 BASIC20.21■□□□□ 0.83
NPIPA2E9PIF3 HRH3-203ENST00000611492 900 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
NPIPA2E9PIF3 PON2-218ENST00000633531 1653 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
NPIPA2E9PIF3 AC064853.3-201ENST00000641801 1658 ntAPPRIS P1 BASIC20.21■□□□□ 0.83
NPIPA2E9PIF3 LRRC34-206ENST00000522526 1899 ntAPPRIS P3 TSL 1 (best) BASIC20.21■□□□□ 0.83
NPIPA2E9PIF3 PREB-201ENST00000260643 2166 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
NPIPA2E9PIF3 UFD1-201ENST00000263202 1814 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
NPIPA2E9PIF3 TTLL1-201ENST00000266254 1645 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
NPIPA2E9PIF3 SETD9-201ENST00000285947 1619 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Retrieved 100 of 98,524 protein–RNA pairs in 114.3 ms