Protein–RNA interactions for Protein: O00560

SDCBP, Syntenin-1, humanhuman

Predicted RBP Predictions only

Length 298 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBPO00560 AC015819.3-201ENST00000624305 2674 ntBASIC11.82□□□□□ -0.52
SDCBPO00560 PHF19-202ENST00000373896 4241 ntAPPRIS P1 TSL 2 BASIC11.82□□□□□ -0.52
SDCBPO00560 ADCY7-202ENST00000394697 6213 ntAPPRIS P1 TSL 5 BASIC11.82□□□□□ -0.52
SDCBPO00560 HEBP1-201ENST00000014930 1173 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
SDCBPO00560 MRPL34-201ENST00000252602 968 ntAPPRIS P2 TSL 1 (best) BASIC11.82□□□□□ -0.52
SDCBPO00560 BLVRB-201ENST00000263368 873 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
SDCBPO00560 TEX29-201ENST00000283547 709 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
SDCBPO00560 KRTAP2-4-201ENST00000394015 764 ntAPPRIS P1 BASIC11.82□□□□□ -0.52
SDCBPO00560 LINC01756-201ENST00000417651 2148 ntTSL 1 (best) BASIC11.82□□□□□ -0.52
SDCBPO00560 KLK4-202ENST00000431178 481 ntTSL 1 (best) BASIC11.82□□□□□ -0.52
SDCBPO00560 AL357497.1-201ENST00000436249 666 ntTSL 3 BASIC11.82□□□□□ -0.52
SDCBPO00560 LAMA4-209ENST00000453937 645 ntTSL 1 (best) BASIC11.82□□□□□ -0.52
SDCBPO00560 RNMTL1P1-201ENST00000454103 560 ntBASIC11.82□□□□□ -0.52
SDCBPO00560 RPSAP36-202ENST00000494591 1261 ntBASIC11.82□□□□□ -0.52
SDCBPO00560 NME2-204ENST00000503064 749 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
SDCBPO00560 AC119751.2-201ENST00000504529 210 ntBASIC11.82□□□□□ -0.52
SDCBPO00560 RNA5SP412-201ENST00000516234 123 ntBASIC11.82□□□□□ -0.52
SDCBPO00560 C8orf37-AS1-202ENST00000517655 562 ntTSL 4 BASIC11.82□□□□□ -0.52
SDCBPO00560 MFF-223ENST00000524634 647 ntTSL 2 BASIC11.82□□□□□ -0.52
SDCBPO00560 NRDC-214ENST00000544028 3819 ntTSL 5 BASIC11.82□□□□□ -0.52
SDCBPO00560 AC003686.1-201ENST00000550956 1034 ntBASIC11.82□□□□□ -0.52
SDCBPO00560 RPL28-208ENST00000559463 852 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
SDCBPO00560 NIP7-208ENST00000569637 1099 ntTSL 2 BASIC11.82□□□□□ -0.52
SDCBPO00560 CRHR1-208ENST00000577353 1206 ntTSL 1 (best) BASIC11.82□□□□□ -0.52
SDCBPO00560 AC129510.1-201ENST00000579979 555 ntTSL 3 BASIC11.82□□□□□ -0.52
SDCBPO00560 AC011495.3-201ENST00000596472 427 ntTSL 2 BASIC11.82□□□□□ -0.52
SDCBPO00560 PLA2G4C-AS1-201ENST00000596552 568 ntTSL 3 BASIC11.82□□□□□ -0.52
SDCBPO00560 TECR-220ENST00000600083 1204 ntTSL 2 BASIC11.82□□□□□ -0.52
SDCBPO00560 AL023803.2-201ENST00000620080 638 ntBASIC11.82□□□□□ -0.52
SDCBPO00560 AC004706.3-207ENST00000634823 977 ntTSL 5 BASIC11.82□□□□□ -0.52
SDCBPO00560 SNX25-201ENST00000264694 3264 ntAPPRIS P1 TSL 5 BASIC11.82□□□□□ -0.52
SDCBPO00560 BRMS1-201ENST00000359957 1445 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
SDCBPO00560 SETD4-207ENST00000399215 4272 ntAPPRIS P1 TSL 2 BASIC11.82□□□□□ -0.52
SDCBPO00560 AC022364.1-202ENST00000617468 2409 ntBASIC11.82□□□□□ -0.52
SDCBPO00560 ARHGEF2-206ENST00000462460 4438 ntTSL 5 BASIC11.82□□□□□ -0.52
SDCBPO00560 AL024498.2-201ENST00000480294 1589 ntAPPRIS P1 TSL 2 BASIC11.82□□□□□ -0.52
SDCBPO00560 Z98885.2-201ENST00000565177 1567 ntTSL 2 BASIC11.82□□□□□ -0.52
SDCBPO00560 JOSD1-201ENST00000216039 3648 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
SDCBPO00560 TUBGCP4-201ENST00000260383 2617 ntAPPRIS ALT1 TSL 1 (best) BASIC11.82□□□□□ -0.52
SDCBPO00560 CSNK1E-201ENST00000359867 2642 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
SDCBPO00560 HNRNPUL1-207ENST00000595018 2794 ntTSL 2 BASIC11.82□□□□□ -0.52
SDCBPO00560 FRMD6-203ENST00000395718 4828 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
SDCBPO00560 ZNF595-205ENST00000610261 2911 ntAPPRIS P4 TSL 1 (best) BASIC11.82□□□□□ -0.52
SDCBPO00560 RBM10-201ENST00000329236 3201 ntAPPRIS ALT2 TSL 1 (best) BASIC11.82□□□□□ -0.52
SDCBPO00560 LINC00115-201ENST00000473798 1317 ntBASIC11.82□□□□□ -0.52
SDCBPO00560 ZNF493-208ENST00000599461 1769 ntBASIC11.82□□□□□ -0.52
SDCBPO00560 FLNC-202ENST00000346177 9042 ntAPPRIS ALT1 TSL 1 (best) BASIC11.82□□□□□ -0.52
SDCBPO00560 FUT6-205ENST00000527106 2211 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
SDCBPO00560 SLC37A4-202ENST00000357590 2356 ntTSL 5 BASIC11.82□□□□□ -0.52
SDCBPO00560 NEK3-205ENST00000610828 2396 ntAPPRIS P2 TSL 1 (best) BASIC11.82□□□□□ -0.52
SDCBPO00560 ZFYVE27-205ENST00000370613 2669 ntTSL 2 BASIC11.82□□□□□ -0.52
SDCBPO00560 ARHGAP33-203ENST00000314737 3858 ntAPPRIS P3 TSL 2 BASIC11.82□□□□□ -0.52
SDCBPO00560 ARAP1-204ENST00000393609 5145 ntAPPRIS ALT2 TSL 2 BASIC11.81□□□□□ -0.52
SDCBPO00560 MKL1-210ENST00000614754 3917 ntTSL 5 BASIC11.81□□□□□ -0.52
SDCBPO00560 ZNF200-205ENST00000431561 3348 ntAPPRIS P3 TSL 1 (best) BASIC11.81□□□□□ -0.52
SDCBPO00560 IKBKB-218ENST00000520835 2403 ntTSL 2 BASIC11.81□□□□□ -0.52
SDCBPO00560 CCDC138-203ENST00000412964 2250 ntAPPRIS ALT2 TSL 1 (best) BASIC11.81□□□□□ -0.52
SDCBPO00560 SIGLEC12-201ENST00000291707 2121 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
SDCBPO00560 WASHC1-201ENST00000442898 1827 ntAPPRIS P1 TSL 2 BASIC11.81□□□□□ -0.52
SDCBPO00560 PRDM16-201ENST00000270722 8690 ntAPPRIS P3 TSL 1 (best) BASIC11.81□□□□□ -0.52
SDCBPO00560 KCNN3-202ENST00000358505 1658 ntTSL 1 (best) BASIC11.81□□□□□ -0.52
SDCBPO00560 XBP1-204ENST00000405219 1690 ntTSL 2 BASIC11.81□□□□□ -0.52
SDCBPO00560 TUBA3D-201ENST00000321253 1546 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
SDCBPO00560 ADPRH-205ENST00000478927 1501 ntAPPRIS P1 TSL 2 BASIC11.81□□□□□ -0.52
SDCBPO00560 GSDMA-203ENST00000635792 1546 ntAPPRIS P1 TSL 5 BASIC11.81□□□□□ -0.52
SDCBPO00560 CACNA1G-218ENST00000507510 7014 ntAPPRIS ALT2 TSL 1 (best) BASIC11.81□□□□□ -0.52
SDCBPO00560 AP003392.4-202ENST00000526453 1359 ntTSL 2 BASIC11.81□□□□□ -0.52
SDCBPO00560 BCL2L1-201ENST00000307677 2610 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
SDCBPO00560 NUMA1-233ENST00000616538 6998 ntAPPRIS ALT2 TSL 5 BASIC11.81□□□□□ -0.52
SDCBPO00560 GREB1-206ENST00000396123 5296 ntTSL 1 (best) BASIC11.81□□□□□ -0.52
SDCBPO00560 LDLRAD4-AS1-201ENST00000588672 2190 ntTSL 1 (best) BASIC11.81□□□□□ -0.52
SDCBPO00560 POLD1-201ENST00000440232 3444 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
SDCBPO00560 AATBC-203ENST00000448247 1889 ntTSL 2 BASIC11.81□□□□□ -0.52
SDCBPO00560 MARK2P16-201ENST00000605714 1723 ntBASIC11.81□□□□□ -0.52
SDCBPO00560 AC018629.1-201ENST00000623381 1736 ntBASIC11.81□□□□□ -0.52
SDCBPO00560 ESYT3-202ENST00000389567 4407 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
SDCBPO00560 CCNG2-202ENST00000395640 1410 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
SDCBPO00560 BARX1-AS1-201ENST00000453045 1445 ntTSL 1 (best) BASIC11.81□□□□□ -0.52
SDCBPO00560 FP565260.6-203ENST00000620015 1435 ntTSL 3 BASIC11.81□□□□□ -0.52
SDCBPO00560 TSPO-201ENST00000329563 955 ntAPPRIS P1 TSL 3 BASIC11.81□□□□□ -0.52
SDCBPO00560 SF3B5-201ENST00000367569 693 ntAPPRIS P1 BASIC11.81□□□□□ -0.52
SDCBPO00560 UBE4B-203ENST00000377153 1273 ntTSL 3 BASIC11.81□□□□□ -0.52
SDCBPO00560 NUDT2-202ENST00000379155 1002 ntAPPRIS P1 TSL 3 BASIC11.81□□□□□ -0.52
SDCBPO00560 IFT20-203ENST00000395418 825 ntAPPRIS P4 TSL 1 (best) BASIC11.81□□□□□ -0.52
SDCBPO00560 MDP1-202ENST00000396833 582 ntTSL 1 (best) BASIC11.81□□□□□ -0.52
SDCBPO00560 AL021707.3-201ENST00000418803 527 ntTSL 5 BASIC11.81□□□□□ -0.52
SDCBPO00560 MIR663AHG-201ENST00000427348 1213 ntTSL 1 (best) BASIC11.81□□□□□ -0.52
SDCBPO00560 HNRNPA1P63-201ENST00000427917 963 ntBASIC11.81□□□□□ -0.52
SDCBPO00560 AL451065.1-201ENST00000428958 238 ntTSL 5 BASIC11.81□□□□□ -0.52
SDCBPO00560 RNASEH1-AS1-202ENST00000438436 1218 ntTSL 1 (best) BASIC11.81□□□□□ -0.52
SDCBPO00560 USE1-202ENST00000445667 795 ntAPPRIS ALT1 TSL 5 BASIC11.81□□□□□ -0.52
SDCBPO00560 RCN1-210ENST00000532942 1191 ntAPPRIS ALT2 TSL 2 BASIC11.81□□□□□ -0.52
SDCBPO00560 TGIF1-218ENST00000551402 1089 ntTSL 2 BASIC11.81□□□□□ -0.52
SDCBPO00560 AL163636.1-201ENST00000554286 915 ntTSL 5 BASIC11.81□□□□□ -0.52
SDCBPO00560 TMEM208-207ENST00000563953 887 ntTSL 2 BASIC11.81□□□□□ -0.52
SDCBPO00560 AC005730.2-201ENST00000564549 1184 ntBASIC11.81□□□□□ -0.52
SDCBPO00560 C15orf40-211ENST00000565712 559 ntTSL 3 BASIC11.81□□□□□ -0.52
SDCBPO00560 AP005264.1-201ENST00000586226 733 ntTSL 3 BASIC11.81□□□□□ -0.52
SDCBPO00560 IFT20-216ENST00000588477 774 ntTSL 5 BASIC11.81□□□□□ -0.52
SDCBPO00560 TXNL4A-212ENST00000592957 546 ntTSL 3 BASIC11.81□□□□□ -0.52
Retrieved 100 of 98,524 protein–RNA pairs in 41.3 ms