Protein–RNA interactions for Protein: Q9C0C7

AMBRA1, Activating molecule in BECN1-regulated autophagy protein 1, humanhuman

Predictions only

Length 1,298 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
AMBRA1Q9C0C7 SPPL2A-201ENST00000261854 7372 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
AMBRA1Q9C0C7 UBBP4-202ENST00000584755 1459 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
AMBRA1Q9C0C7 PAWR-201ENST00000328827 9129 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
AMBRA1Q9C0C7 PPFIBP1-215ENST00000542629 3208 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
AMBRA1Q9C0C7 METTL6-201ENST00000383789 1413 ntTSL 2 BASIC12.98□□□□□ -0.33
AMBRA1Q9C0C7 EMP1-211ENST00000544053 1436 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
AMBRA1Q9C0C7 WASF3-202ENST00000361042 4823 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
AMBRA1Q9C0C7 MROH2A-201ENST00000389758 5355 ntAPPRIS ALT2 TSL 5 BASIC12.98□□□□□ -0.33
AMBRA1Q9C0C7 MAMDC4-201ENST00000317446 3658 ntAPPRIS P2 TSL 1 (best) BASIC12.98□□□□□ -0.33
AMBRA1Q9C0C7 FAM13B-203ENST00000425075 3098 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
AMBRA1Q9C0C7 ITGB4-202ENST00000449880 5689 ntAPPRIS P3 TSL 1 (best) BASIC12.98□□□□□ -0.33
AMBRA1Q9C0C7 CRYBG1-204ENST00000633556 9909 ntAPPRIS ALT2 TSL 5 BASIC12.98□□□□□ -0.33
AMBRA1Q9C0C7 LINC01662-201ENST00000342888 1859 ntTSL 2 BASIC12.98□□□□□ -0.33
AMBRA1Q9C0C7 LINC00327-203ENST00000576696 1308 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
AMBRA1Q9C0C7 RAB15-201ENST00000267512 3391 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
AMBRA1Q9C0C7 EPHA1-201ENST00000275815 3363 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
AMBRA1Q9C0C7 CRABP1-201ENST00000299529 772 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
AMBRA1Q9C0C7 UROS-203ENST00000368786 1216 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
AMBRA1Q9C0C7 GNRH2-204ENST00000380347 758 ntAPPRIS ALT2 TSL 5 BASIC12.98□□□□□ -0.33
AMBRA1Q9C0C7 ZNF564-202ENST00000416136 255 ntTSL 3 BASIC12.98□□□□□ -0.33
AMBRA1Q9C0C7 AC034228.2-201ENST00000432558 459 ntTSL 3 BASIC12.98□□□□□ -0.33
AMBRA1Q9C0C7 PGAP2-209ENST00000464261 830 ntTSL 3 BASIC12.98□□□□□ -0.33
AMBRA1Q9C0C7 GNAL-204ENST00000535121 1285 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
AMBRA1Q9C0C7 AL356756.1-201ENST00000550941 551 ntTSL 3 BASIC12.98□□□□□ -0.33
AMBRA1Q9C0C7 GFER-204ENST00000567719 483 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
AMBRA1Q9C0C7 CRHR1-208ENST00000577353 1206 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
AMBRA1Q9C0C7 CEP95-212ENST00000581056 903 ntAPPRIS ALT2 TSL 2 BASIC12.98□□□□□ -0.33
AMBRA1Q9C0C7 AC021594.1-201ENST00000587174 636 ntTSL 3 BASIC12.98□□□□□ -0.33
AMBRA1Q9C0C7 DIO1-215ENST00000610607 796 ntTSL 5 BASIC12.98□□□□□ -0.33
AMBRA1Q9C0C7 LINC00595-217ENST00000635545 549 ntTSL 4 BASIC12.98□□□□□ -0.33
AMBRA1Q9C0C7 RERG-201ENST00000256953 2264 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
AMBRA1Q9C0C7 MICA-210ENST00000616296 2260 ntTSL 5 BASIC12.98□□□□□ -0.33
AMBRA1Q9C0C7 CYFIP2-219ENST00000616178 4210 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
AMBRA1Q9C0C7 SIGLECL1-201ENST00000316401 1708 ntAPPRIS P3 TSL 2 BASIC12.98□□□□□ -0.33
AMBRA1Q9C0C7 HSD17B6-207ENST00000555805 1722 ntAPPRIS P1 TSL 5 BASIC12.98□□□□□ -0.33
AMBRA1Q9C0C7 LLGL1-203ENST00000621229 3187 ntTSL 5 BASIC12.98□□□□□ -0.33
AMBRA1Q9C0C7 NDUFAF7-201ENST00000002125 2176 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
AMBRA1Q9C0C7 ATXN2L-225ENST00000570200 3635 ntAPPRIS ALT2 TSL 1 (best) BASIC12.98□□□□□ -0.33
AMBRA1Q9C0C7 MGRN1-211ENST00000588994 1665 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
AMBRA1Q9C0C7 TADA3-204ENST00000440161 1617 ntAPPRIS P1 TSL 2 BASIC12.98□□□□□ -0.33
AMBRA1Q9C0C7 SLC25A17-217ENST00000544408 2060 ntTSL 2 BASIC12.98□□□□□ -0.33
AMBRA1Q9C0C7 MCRIP1-212ENST00000576730 2979 ntAPPRIS P1 TSL 2 BASIC12.98□□□□□ -0.33
AMBRA1Q9C0C7 TRPM2-204ENST00000397932 5216 ntAPPRIS ALT2 TSL 1 (best) BASIC12.98□□□□□ -0.33
AMBRA1Q9C0C7 SRP72-205ENST00000510663 2473 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
AMBRA1Q9C0C7 CHRNA2-207ENST00000520933 2497 ntAPPRIS ALT2 TSL 5 BASIC12.98□□□□□ -0.33
AMBRA1Q9C0C7 AGAP6-202ENST00000412531 2372 ntAPPRIS P2 TSL 1 (best) BASIC12.98□□□□□ -0.33
AMBRA1Q9C0C7 ELAVL1-205ENST00000596459 1473 ntAPPRIS P1 TSL 2 BASIC12.97□□□□□ -0.33
AMBRA1Q9C0C7 RABGEF1-210ENST00000437078 4319 ntAPPRIS P1 TSL 5 BASIC12.97□□□□□ -0.33
AMBRA1Q9C0C7 DENND1B-211ENST00000620048 8378 ntAPPRIS ALT2 TSL 5 BASIC12.97□□□□□ -0.33
AMBRA1Q9C0C7 FAM151A-202ENST00000371304 1444 ntAPPRIS ALT2 TSL 5 BASIC12.97□□□□□ -0.33
AMBRA1Q9C0C7 CDPF1-203ENST00000404583 1439 ntAPPRIS ALT1 TSL 2 BASIC12.97□□□□□ -0.33
AMBRA1Q9C0C7 TLE3-220ENST00000559929 3408 ntTSL 5 BASIC12.97□□□□□ -0.33
AMBRA1Q9C0C7 VTI1B-204ENST00000554659 5351 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
AMBRA1Q9C0C7 KCNIP3-201ENST00000295225 2940 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
AMBRA1Q9C0C7 CSF2RB-202ENST00000403662 4863 ntAPPRIS P2 TSL 5 BASIC12.97□□□□□ -0.33
AMBRA1Q9C0C7 AGAP12P-202ENST00000603888 2141 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
AMBRA1Q9C0C7 RBM15-204ENST00000617047 3284 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
AMBRA1Q9C0C7 PLEKHG6-201ENST00000011684 2881 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
AMBRA1Q9C0C7 CBX3-203ENST00000409747 1717 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
AMBRA1Q9C0C7 TRMT1L-201ENST00000367506 4392 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
AMBRA1Q9C0C7 ARHGEF1-203ENST00000354532 3243 ntAPPRIS ALT2 TSL 1 (best) BASIC12.97□□□□□ -0.33
AMBRA1Q9C0C7 AGRN-210ENST00000620552 7394 ntTSL 5 BASIC12.97□□□□□ -0.33
AMBRA1Q9C0C7 ALDH3A2-201ENST00000176643 3928 ntAPPRIS P3 TSL 1 (best) BASIC12.97□□□□□ -0.33
AMBRA1Q9C0C7 LIMS2-209ENST00000410038 1695 ntTSL 2 BASIC12.97□□□□□ -0.33
AMBRA1Q9C0C7 MRPL32-201ENST00000223324 1035 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
AMBRA1Q9C0C7 HIST3H3-201ENST00000366696 481 ntAPPRIS P1 BASIC12.97□□□□□ -0.33
AMBRA1Q9C0C7 AC093904.2-201ENST00000495580 418 ntTSL 3 BASIC12.97□□□□□ -0.33
AMBRA1Q9C0C7 IFITM3-202ENST00000526811 543 ntAPPRIS ALT1 TSL 5 BASIC12.97□□□□□ -0.33
AMBRA1Q9C0C7 NFATC2IP-206ENST00000568148 1157 ntTSL 2 BASIC12.97□□□□□ -0.33
AMBRA1Q9C0C7 AC104982.3-201ENST00000581995 514 ntBASIC12.97□□□□□ -0.33
AMBRA1Q9C0C7 AC092634.5-202ENST00000587736 928 ntTSL 2 BASIC12.97□□□□□ -0.33
AMBRA1Q9C0C7 AC005498.2-204ENST00000590613 413 ntTSL 3 BASIC12.97□□□□□ -0.33
AMBRA1Q9C0C7 AL008638.5-201ENST00000623814 1298 ntBASIC12.97□□□□□ -0.33
AMBRA1Q9C0C7 AL161773.1-201ENST00000624845 863 ntBASIC12.97□□□□□ -0.33
AMBRA1Q9C0C7 AL139099.5-201ENST00000635274 300 ntBASIC12.97□□□□□ -0.33
AMBRA1Q9C0C7 ABBA01031663.1-201ENST00000635630 790 ntBASIC12.97□□□□□ -0.33
AMBRA1Q9C0C7 HYOU1-220ENST00000617285 4529 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
AMBRA1Q9C0C7 DPP10-201ENST00000310323 3052 ntAPPRIS P3 TSL 1 (best) BASIC12.97□□□□□ -0.33
AMBRA1Q9C0C7 ORC6-201ENST00000219097 1628 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
AMBRA1Q9C0C7 CCNB2-201ENST00000288207 1556 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
AMBRA1Q9C0C7 SUPT20HL1-201ENST00000436466 2618 ntBASIC12.97□□□□□ -0.33
AMBRA1Q9C0C7 DLGAP3-202ENST00000373347 3856 ntAPPRIS P1 TSL 5 BASIC12.97□□□□□ -0.33
AMBRA1Q9C0C7 RAB37-203ENST00000392612 2528 ntTSL 2 BASIC12.97□□□□□ -0.33
AMBRA1Q9C0C7 TNFSF13-203ENST00000380535 2195 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
AMBRA1Q9C0C7 TWSG1-201ENST00000262120 3756 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
AMBRA1Q9C0C7 TROVE2-206ENST00000400968 2143 ntAPPRIS P3 TSL 1 (best) BASIC12.97□□□□□ -0.33
AMBRA1Q9C0C7 HNRNPH1-216ENST00000510411 2105 ntTSL 5 BASIC12.97□□□□□ -0.33
AMBRA1Q9C0C7 RSBN1-201ENST00000261441 6621 ntAPPRIS P1 TSL 2 BASIC12.97□□□□□ -0.33
AMBRA1Q9C0C7 SETD1A-201ENST00000262519 6451 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
AMBRA1Q9C0C7 MCF2L-213ENST00000421756 3560 ntTSL 1 (best) BASIC12.96□□□□□ -0.33
AMBRA1Q9C0C7 INTS3-204ENST00000435409 3597 ntAPPRIS P1 TSL 2 BASIC12.96□□□□□ -0.33
AMBRA1Q9C0C7 VAMP7-202ENST00000286448 2646 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
AMBRA1Q9C0C7 FAM90A7P-201ENST00000382628 1395 ntBASIC12.96□□□□□ -0.33
AMBRA1Q9C0C7 FAM90A23P-201ENST00000400136 1395 ntBASIC12.96□□□□□ -0.33
AMBRA1Q9C0C7 RBM4-201ENST00000310092 1694 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
AMBRA1Q9C0C7 AL355336.1-201ENST00000451355 1676 ntTSL 2 BASIC12.96□□□□□ -0.33
AMBRA1Q9C0C7 POLL-202ENST00000339310 2289 ntTSL 1 (best) BASIC12.96□□□□□ -0.33
AMBRA1Q9C0C7 ZNF799-202ENST00000430385 2583 ntAPPRIS P1 TSL 2 BASIC12.96□□□□□ -0.33
AMBRA1Q9C0C7 PAX3-205ENST00000392069 3170 ntTSL 5 BASIC12.96□□□□□ -0.33
AMBRA1Q9C0C7 ATP2B3-201ENST00000263519 6420 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
Retrieved 100 of 98,524 protein–RNA pairs in 52 ms