Protein–RNA interactions for Protein: Q9BUN5

CCDC28B, Coiled-coil domain-containing protein 28B, humanhuman

Predictions only

Length 200 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28BQ9BUN5 AC236430.1-201ENST00000402231 743 ntBASIC13.5□□□□□ -0.25
CCDC28BQ9BUN5 TPM1-207ENST00000403994 1049 ntAPPRIS ALT1 TSL 1 (best) BASIC13.5□□□□□ -0.25
CCDC28BQ9BUN5 LAMA4-208ENST00000431543 1080 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
CCDC28BQ9BUN5 TCAF2-205ENST00000444908 2976 ntTSL 5 BASIC13.5□□□□□ -0.25
CCDC28BQ9BUN5 FUZ-207ENST00000526575 482 ntTSL 4 BASIC13.5□□□□□ -0.25
CCDC28BQ9BUN5 RDH5-204ENST00000548082 1259 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
CCDC28BQ9BUN5 TGIF1-218ENST00000551402 1089 ntTSL 2 BASIC13.5□□□□□ -0.25
CCDC28BQ9BUN5 RANGRF-205ENST00000580434 749 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
CCDC28BQ9BUN5 FXYD6-216ENST00000584230 566 ntAPPRIS ALT1 TSL 3 BASIC13.5□□□□□ -0.25
CCDC28BQ9BUN5 C19orf38-203ENST00000592854 1060 ntAPPRIS P1 TSL 5 BASIC13.5□□□□□ -0.25
CCDC28BQ9BUN5 AC005253.2-201ENST00000593791 432 ntTSL 3 BASIC13.5□□□□□ -0.25
CCDC28BQ9BUN5 BTNL10-201ENST00000595971 695 ntBASIC13.5□□□□□ -0.25
CCDC28BQ9BUN5 SMIM11B-202ENST00000619874 843 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
CCDC28BQ9BUN5 Metazoa_SRP.80-201ENST00000619894 320 ntBASIC13.5□□□□□ -0.25
CCDC28BQ9BUN5 AC244453.2-201ENST00000457996 3543 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
CCDC28BQ9BUN5 KCNK10-202ENST00000319231 2725 ntAPPRIS P4 TSL 1 (best) BASIC13.5□□□□□ -0.25
CCDC28BQ9BUN5 ELN-234ENST00000621115 3452 ntAPPRIS ALT2 TSL 2 BASIC13.5□□□□□ -0.25
CCDC28BQ9BUN5 PPFIA4-203ENST00000367240 6434 ntAPPRIS P5 TSL 5 BASIC13.5□□□□□ -0.25
CCDC28BQ9BUN5 PERM1-202ENST00000433179 3340 ntAPPRIS P2 TSL 5 BASIC13.5□□□□□ -0.25
CCDC28BQ9BUN5 AOC2-202ENST00000452774 2572 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
CCDC28BQ9BUN5 ADRA1A-210ENST00000519229 1838 ntTSL 5 BASIC13.5□□□□□ -0.25
CCDC28BQ9BUN5 ITFG1-204ENST00000544001 1849 ntTSL 2 BASIC13.5□□□□□ -0.25
CCDC28BQ9BUN5 C9orf170-201ENST00000623052 3239 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
CCDC28BQ9BUN5 GDA-203ENST00000376986 1771 ntTSL 2 BASIC13.5□□□□□ -0.25
CCDC28BQ9BUN5 RAB29-201ENST00000235932 1723 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
CCDC28BQ9BUN5 EEF2KMT-201ENST00000427587 2390 ntAPPRIS P4 TSL 1 (best) BASIC13.5□□□□□ -0.25
CCDC28BQ9BUN5 VASH1-AS1-202ENST00000556072 1684 ntTSL 2 BASIC13.5□□□□□ -0.25
CCDC28BQ9BUN5 DGKD-201ENST00000264057 6297 ntAPPRIS P3 TSL 1 (best) BASIC13.5□□□□□ -0.25
CCDC28BQ9BUN5 GK-205ENST00000378946 3638 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
CCDC28BQ9BUN5 TADA3-204ENST00000440161 1617 ntAPPRIS P1 TSL 2 BASIC13.5□□□□□ -0.25
CCDC28BQ9BUN5 HSPB7-201ENST00000311890 2892 ntAPPRIS P2 TSL 1 (best) BASIC13.5□□□□□ -0.25
CCDC28BQ9BUN5 EDEM3-202ENST00000367512 6678 ntAPPRIS ALT2 TSL 1 (best) BASIC13.49□□□□□ -0.25
CCDC28BQ9BUN5 WDR66-202ENST00000397454 3420 ntAPPRIS ALT2 TSL 1 (best) BASIC13.49□□□□□ -0.25
CCDC28BQ9BUN5 SPAAR-203ENST00000636776 1538 ntAPPRIS P1 BASIC13.49□□□□□ -0.25
CCDC28BQ9BUN5 OS9-220ENST00000552285 2135 ntAPPRIS ALT2 TSL 1 (best) BASIC13.49□□□□□ -0.25
CCDC28BQ9BUN5 CSTF2-203ENST00000415585 2074 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
CCDC28BQ9BUN5 RNASE7-201ENST00000298690 1498 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
CCDC28BQ9BUN5 SGCE-204ENST00000428696 1409 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
CCDC28BQ9BUN5 STX3-207ENST00000633708 3111 ntTSL 5 BASIC13.49□□□□□ -0.25
CCDC28BQ9BUN5 AC245140.2-201ENST00000624054 1939 ntBASIC13.49□□□□□ -0.25
CCDC28BQ9BUN5 ABCB9-201ENST00000280560 3517 ntAPPRIS P2 TSL 1 (best) BASIC13.49□□□□□ -0.25
CCDC28BQ9BUN5 SGSM3-201ENST00000248929 2969 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
CCDC28BQ9BUN5 HACD3-202ENST00000442729 1332 ntTSL 2 BASIC13.49□□□□□ -0.25
CCDC28BQ9BUN5 AC099850.1-201ENST00000451775 1338 ntTSL 2 BASIC13.49□□□□□ -0.25
CCDC28BQ9BUN5 NUTM2A-AS1-208ENST00000446751 2394 ntTSL 2 BASIC13.49□□□□□ -0.25
CCDC28BQ9BUN5 PDZD4-209ENST00000544474 3418 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
CCDC28BQ9BUN5 POLG-202ENST00000442287 4487 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
CCDC28BQ9BUN5 ZNF277-201ENST00000361822 1849 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
CCDC28BQ9BUN5 EIF3G-201ENST00000253108 1103 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
CCDC28BQ9BUN5 AC017104.1-201ENST00000415129 720 ntTSL 3 BASIC13.49□□□□□ -0.25
CCDC28BQ9BUN5 LINC00686-201ENST00000435412 332 ntTSL 3 BASIC13.49□□□□□ -0.25
CCDC28BQ9BUN5 AL109827.1-203ENST00000541176 872 ntAPPRIS P5 TSL 2 BASIC13.49□□□□□ -0.25
CCDC28BQ9BUN5 ORC6-206ENST00000568364 888 ntTSL 5 BASIC13.49□□□□□ -0.25
CCDC28BQ9BUN5 AC008735.3-201ENST00000596646 500 ntBASIC13.49□□□□□ -0.25
CCDC28BQ9BUN5 RIC8A-217ENST00000626818 159 ntTSL 5 BASIC13.49□□□□□ -0.25
CCDC28BQ9BUN5 RHOXF1P1-202ENST00000635473 501 ntBASIC13.49□□□□□ -0.25
CCDC28BQ9BUN5 NDRG2-201ENST00000298684 1784 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
CCDC28BQ9BUN5 SNED1-201ENST00000310397 8174 ntAPPRIS P2 TSL 5 BASIC13.49□□□□□ -0.25
CCDC28BQ9BUN5 BRD1-201ENST00000216267 4614 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
CCDC28BQ9BUN5 ARMCX2-202ENST00000330154 2663 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
CCDC28BQ9BUN5 TBC1D14-208ENST00000451522 4149 ntAPPRIS ALT1 TSL 5 BASIC13.49□□□□□ -0.25
CCDC28BQ9BUN5 ODF2L-204ENST00000370566 2155 ntAPPRIS P1 TSL 2 BASIC13.49□□□□□ -0.25
CCDC28BQ9BUN5 CYYR1-201ENST00000299340 3101 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
CCDC28BQ9BUN5 ZBTB20-211ENST00000471418 3133 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
CCDC28BQ9BUN5 RBPJ-203ENST00000345843 1682 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
CCDC28BQ9BUN5 EPRS-201ENST00000366923 5014 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
CCDC28BQ9BUN5 LIMS2-209ENST00000410038 1695 ntTSL 2 BASIC13.49□□□□□ -0.25
CCDC28BQ9BUN5 IFT122-204ENST00000349441 3569 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
CCDC28BQ9BUN5 PPFIA4-204ENST00000447715 6349 ntAPPRIS ALT2 TSL 1 (best) BASIC13.49□□□□□ -0.25
CCDC28BQ9BUN5 DISC1-221ENST00000620189 6689 ntAPPRIS ALT2 TSL 5 BASIC13.49□□□□□ -0.25
CCDC28BQ9BUN5 SLC6A5-202ENST00000525748 7084 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
CCDC28BQ9BUN5 TICRR-201ENST00000268138 6775 ntAPPRIS P3 TSL 5 BASIC13.49□□□□□ -0.25
CCDC28BQ9BUN5 PXK-210ENST00000479241 2817 ntTSL 2 BASIC13.49□□□□□ -0.25
CCDC28BQ9BUN5 ATXN2L-225ENST00000570200 3635 ntAPPRIS ALT2 TSL 1 (best) BASIC13.49□□□□□ -0.25
CCDC28BQ9BUN5 SEC13-203ENST00000383801 1479 ntTSL 2 BASIC13.48□□□□□ -0.25
CCDC28BQ9BUN5 SEC13-208ENST00000397109 1467 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
CCDC28BQ9BUN5 PLA2G15-201ENST00000219345 2727 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
CCDC28BQ9BUN5 AAGAB-207ENST00000561452 2251 ntTSL 5 BASIC13.48□□□□□ -0.25
CCDC28BQ9BUN5 C1R-209ENST00000542285 2660 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
CCDC28BQ9BUN5 PTPN1-202ENST00000541713 3469 ntTSL 2 BASIC13.48□□□□□ -0.25
CCDC28BQ9BUN5 LINC00563-201ENST00000566370 1400 ntBASIC13.48□□□□□ -0.25
CCDC28BQ9BUN5 AP4M1-201ENST00000359593 1817 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
CCDC28BQ9BUN5 IL1RAP-211ENST00000439062 2244 ntAPPRIS P1 TSL 2 BASIC13.48□□□□□ -0.25
CCDC28BQ9BUN5 STX16-NPEPL1-202ENST00000530122 3433 ntAPPRIS P1 TSL 5 BASIC13.48□□□□□ -0.25
CCDC28BQ9BUN5 C1orf167-202ENST00000433342 4545 ntAPPRIS P5 TSL 5 BASIC13.48□□□□□ -0.25
CCDC28BQ9BUN5 AC012531.2-201ENST00000512206 1389 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
CCDC28BQ9BUN5 LMBR1L-201ENST00000267102 2934 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
CCDC28BQ9BUN5 CATSPERD-202ENST00000381624 2516 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
CCDC28BQ9BUN5 A1CF-204ENST00000373997 2116 ntAPPRIS ALT1 TSL 1 (best) BASIC13.48□□□□□ -0.25
CCDC28BQ9BUN5 HECTD2-201ENST00000298068 4802 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
CCDC28BQ9BUN5 NISCH-207ENST00000479054 5173 ntAPPRIS P3 TSL 1 (best) BASIC13.48□□□□□ -0.25
CCDC28BQ9BUN5 SLC2A14-205ENST00000535295 1732 ntTSL 2 BASIC13.48□□□□□ -0.25
CCDC28BQ9BUN5 MYRF-202ENST00000278836 5927 ntAPPRIS ALT2 TSL 1 (best) BASIC13.48□□□□□ -0.25
CCDC28BQ9BUN5 DNAJB12-201ENST00000338820 4360 ntTSL 2 BASIC13.48□□□□□ -0.25
CCDC28BQ9BUN5 PROM2-201ENST00000317620 4728 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
CCDC28BQ9BUN5 EDARADD-204ENST00000637660 2803 ntTSL 5 BASIC13.48□□□□□ -0.25
CCDC28BQ9BUN5 FAM122B-202ENST00000343004 4326 ntAPPRIS ALT2 TSL 1 (best) BASIC13.48□□□□□ -0.25
CCDC28BQ9BUN5 TRAK1-210ENST00000613405 4672 ntTSL 2 BASIC13.48□□□□□ -0.25
CCDC28BQ9BUN5 PLXNA1-201ENST00000393409 9066 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
CCDC28BQ9BUN5 AC010547.1-201ENST00000500612 2793 ntTSL 2 BASIC13.48□□□□□ -0.25
Retrieved 100 of 98,524 protein–RNA pairs in 67.2 ms