RNA–Protein interactions for RNA: ENST00000544474.5

PDZD4-209, Transcript of PDZ domain containing 4, humanhuman

TSL 1 (best) BASIC

Gene PDZD4, Length 3,418 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDZD4-209ENST00000544474 NISCHQ9Y2I1 1504 aa24.06■■□□□ 1.44
PDZD4-209ENST00000544474 SHROOM4Q9ULL8 1493 aa21.84■■□□□ 1.09
PDZD4-209ENST00000544474 SUPT5HO00267 1087 aaKnown RBP21.74■■□□□ 1.07
PDZD4-209ENST00000544474 DCAF8L2P0C7V8 631 aa21.71■■□□□ 1.07
PDZD4-209ENST00000544474 PELP1Q8IZL8 1130 aaKnown RBP21.67■■□□□ 1.06
PDZD4-209ENST00000544474 PPARGC1BQ86YN6 1023 aaKnown RBP21.55■■□□□ 1.04
PDZD4-209ENST00000544474 PCGF6Q9BYE7 350 aa21.51■■□□□ 1.03
PDZD4-209ENST00000544474 HRCP23327 699 aa21.27■■□□□ 1
PDZD4-209ENST00000544474 MYT1Q01538 1121 aa21.08■□□□□ 0.96
PDZD4-209ENST00000544474 EHMT2Q96KQ7 1210 aa20.92■□□□□ 0.94
PDZD4-209ENST00000544474 LOC105371045A0A1W2PR82 267 aa20.7■□□□□ 0.9
PDZD4-209ENST00000544474 CHIC1Q5VXU3 224 aa20.61■□□□□ 0.89
PDZD4-209ENST00000544474 SCAF1Q9H7N4 1312 aaKnown RBP20.49■□□□□ 0.87
PDZD4-209ENST00000544474 MYO15BQ96JP2 1530 aa20.43■□□□□ 0.86
PDZD4-209ENST00000544474 FAM9AQ8IZU1 332 aaPredicted RBP20.39■□□□□ 0.86
PDZD4-209ENST00000544474 ZCCHC6Q5VYS8 1495 aaKnown RBP20.36■□□□□ 0.85
PDZD4-209ENST00000544474 TTBK1Q5TCY1 1321 aaPredicted RBP20.29■□□□□ 0.84
PDZD4-209ENST00000544474 TRIM26Q12899 539 aaPredicted RBP20.12■□□□□ 0.81
PDZD4-209ENST00000544474 YTHDC1Q96MU7 727 aaKnown RBP20.08■□□□□ 0.81
PDZD4-209ENST00000544474 CCDC180Q9P1Z9 1646 aa20■□□□□ 0.79
PDZD4-209ENST00000544474 DCAF1Q9Y4B6 1507 aa19.97■□□□□ 0.79
PDZD4-209ENST00000544474 GTF3C3Q9Y5Q9 886 aa19.97■□□□□ 0.79
PDZD4-209ENST00000544474 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP19.91■□□□□ 0.78
PDZD4-209ENST00000544474 NEUROD1Q13562 356 aa19.91■□□□□ 0.78
PDZD4-209ENST00000544474 CCER1Q8TC90 406 aaPredicted RBP19.85■□□□□ 0.77
PDZD4-209ENST00000544474 ZEB1P37275 1124 aaPredicted RBP19.84■□□□□ 0.77
PDZD4-209ENST00000544474 ACIN1Q9UKV3 1341 aaKnown RBP19.83■□□□□ 0.77
PDZD4-209ENST00000544474 TRIM41Q8WV44 630 aa19.7■□□□□ 0.74
PDZD4-209ENST00000544474 CENPBP07199 599 aaPredicted RBP19.68■□□□□ 0.74
PDZD4-209ENST00000544474 DIEXFQ68CQ4 756 aaKnown RBP19.61■□□□□ 0.73
PDZD4-209ENST00000544474 ABCC9O60706 1549 aa19.55■□□□□ 0.72
PDZD4-209ENST00000544474 BCL11AQ9H165 835 aa19.53■□□□□ 0.72
PDZD4-209ENST00000544474 SCRIBQ14160 1630 aa19.32■□□□□ 0.68
PDZD4-209ENST00000544474 RSF1Q96T23 1441 aaPredicted RBP19.31■□□□□ 0.68
PDZD4-209ENST00000544474 RANGAP1P46060 587 aaPredicted RBP19.31■□□□□ 0.68
PDZD4-209ENST00000544474 PRKCSHP14314 528 aaPredicted RBP19.23■□□□□ 0.67
PDZD4-209ENST00000544474 PABPN1Q86U42 306 aaKnown RBP eCLIP19.22■□□□□ 0.67
PDZD4-209ENST00000544474 HNRNPUL2Q1KMD3 747 aaKnown RBP19.17■□□□□ 0.66
PDZD4-209ENST00000544474 BCANQ96GW7 911 aa19.16■□□□□ 0.66
PDZD4-209ENST00000544474 MIER1Q8N108 512 aa19.12■□□□□ 0.65
PDZD4-209ENST00000544474 RB1CC1Q8TDY2 1594 aa19.11■□□□□ 0.65
PDZD4-209ENST00000544474 ANP32EQ9BTT0 268 aa19.1■□□□□ 0.65
PDZD4-209ENST00000544474 CECR2Q9BXF3 1484 aa19■□□□□ 0.63
PDZD4-209ENST00000544474 ZNF316A6NFI3 1004 aaPredicted RBP18.99■□□□□ 0.63
PDZD4-209ENST00000544474 UBTFP17480 764 aaKnown RBP18.94■□□□□ 0.62
PDZD4-209ENST00000544474 ERICH6Q7L0X2 663 aa18.94■□□□□ 0.62
PDZD4-209ENST00000544474 CSRNP3Q8WYN3 585 aa18.89■□□□□ 0.61
PDZD4-209ENST00000544474 MROH2BQ7Z745 1585 aa18.79■□□□□ 0.6
PDZD4-209ENST00000544474 ITGAEP38570 1179 aa18.72■□□□□ 0.59
PDZD4-209ENST00000544474 WIZO95785 1651 aa18.68■□□□□ 0.58
PDZD4-209ENST00000544474 TSHZ2Q9NRE2 1034 aa18.67■□□□□ 0.58
PDZD4-209ENST00000544474 SUPT16HQ9Y5B9 1047 aaKnown RBP18.66■□□□□ 0.58
PDZD4-209ENST00000544474 CEP162Q5TB80 1403 aa18.65■□□□□ 0.58
PDZD4-209ENST00000544474 APLP2Q06481 763 aa18.64■□□□□ 0.57
PDZD4-209ENST00000544474 NACADO15069 1562 aa18.58■□□□□ 0.56
PDZD4-209ENST00000544474 FKBP8Q14318 412 aa18.57■□□□□ 0.56
PDZD4-209ENST00000544474 CCDC88BA6NC98 1476 aa18.55■□□□□ 0.56
PDZD4-209ENST00000544474 WRNQ14191 1432 aaPredicted RBP eCLIP18.55■□□□□ 0.56
PDZD4-209ENST00000544474 KCNH8Q96L42 1107 aa18.55■□□□□ 0.56
PDZD4-209ENST00000544474 ABCC8Q09428 1581 aa18.54■□□□□ 0.56
PDZD4-209ENST00000544474 TNIKQ9UKE5 1360 aa18.54■□□□□ 0.56
PDZD4-209ENST00000544474 CLSPNQ9HAW4 1339 aa18.53■□□□□ 0.56
PDZD4-209ENST00000544474 SOGA1O94964 1423 aa18.52■□□□□ 0.56
PDZD4-209ENST00000544474 HIRIP3Q9BW71 556 aaPredicted RBP18.49■□□□□ 0.55
PDZD4-209ENST00000544474 BAZ1AQ9NRL2 1556 aaPredicted RBP18.48■□□□□ 0.55
PDZD4-209ENST00000544474 TRIM52Q96A61 297 aa18.45■□□□□ 0.54
PDZD4-209ENST00000544474 IRX6P78412 446 aaPredicted RBP18.45■□□□□ 0.54
PDZD4-209ENST00000544474 NEFLP07196 543 aa18.43■□□□□ 0.54
PDZD4-209ENST00000544474 CNGB1Q14028 1251 aaPredicted RBP18.43■□□□□ 0.54
PDZD4-209ENST00000544474 EEA1Q15075 1411 aa18.4■□□□□ 0.54
PDZD4-209ENST00000544474 RUSC2Q8N2Y8 1516 aa18.37■□□□□ 0.53
PDZD4-209ENST00000544474 GOLGA3Q08378 1498 aa18.36■□□□□ 0.53
PDZD4-209ENST00000544474 ATP1B4Q9UN42 357 aaPredicted RBP18.36■□□□□ 0.53
PDZD4-209ENST00000544474 TOP2AP11388 1531 aaKnown RBP18.33■□□□□ 0.52
PDZD4-209ENST00000544474 DDX10Q13206 875 aaKnown RBP18.32■□□□□ 0.52
PDZD4-209ENST00000544474 EIF4G1Q04637 1599 aaKnown RBP18.3■□□□□ 0.52
PDZD4-209ENST00000544474 CLIP1P30622 1438 aa18.27■□□□□ 0.52
PDZD4-209ENST00000544474 ANO8Q9HCE9 1232 aaPredicted RBP18.25■□□□□ 0.51
PDZD4-209ENST00000544474 RBM19Q9Y4C8 960 aaKnown RBP18.25■□□□□ 0.51
PDZD4-209ENST00000544474 SMARCA2P51531 1590 aa18.24■□□□□ 0.51
PDZD4-209ENST00000544474 SENP3-EIF4A1A0A087X0R7 540 aa18.23■□□□□ 0.51
PDZD4-209ENST00000544474 NBR1Q14596 966 aa18.23■□□□□ 0.51
PDZD4-209ENST00000544474 CEP164Q9UPV0 1460 aa18.19■□□□□ 0.5
PDZD4-209ENST00000544474 SMARCA4P51532 1647 aa18.19■□□□□ 0.5
PDZD4-209ENST00000544474 P3H3Q8IVL6 736 aa18.16■□□□□ 0.5
PDZD4-209ENST00000544474 VPS8Q8N3P4 1428 aa18.14■□□□□ 0.49
PDZD4-209ENST00000544474 RTN4Q9NQC3 1192 aaKnown RBP18.11■□□□□ 0.49
PDZD4-209ENST00000544474 CCDC136Q96JN2 1154 aa18.09■□□□□ 0.49
PDZD4-209ENST00000544474 MYT1LQ9UL68 1186 aa18.08■□□□□ 0.48
PDZD4-209ENST00000544474 DEKP35659 375 aaKnown RBP18.04■□□□□ 0.48
PDZD4-209ENST00000544474 MSH5O43196 834 aa18.04■□□□□ 0.48
PDZD4-209ENST00000544474 RAPGEF2Q9Y4G8 1499 aa18.01■□□□□ 0.47
PDZD4-209ENST00000544474 CDK11AQ9UQ88 783 aaPredicted RBP18■□□□□ 0.47
PDZD4-209ENST00000544474 DHX57Q6P158 1386 aaKnown RBP17.98■□□□□ 0.47
PDZD4-209ENST00000544474 SIN3AQ96ST3 1273 aa17.98■□□□□ 0.47
PDZD4-209ENST00000544474 SALL2Q9Y467 1007 aaPredicted RBP17.98■□□□□ 0.47
PDZD4-209ENST00000544474 HNRNPUQ00839 825 aaKnown RBP eCLIP17.97■□□□□ 0.47
PDZD4-209ENST00000544474 ARID3CA6NKF2 412 aa17.95■□□□□ 0.46
PDZD4-209ENST00000544474 KIF21BO75037 1637 aa17.95■□□□□ 0.46
PDZD4-209ENST00000544474 KANK4Q5T7N3 995 aaPredicted RBP17.95■□□□□ 0.46
Retrieved 100 of 20,778 RNA–protein pairs in 14.7 ms