Protein–RNA interactions for Protein: P56159

GFRA1, GDNF family receptor alpha-1, humanhuman

Predictions only

Length 465 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
GFRA1P56159 IFI27L1-211ENST00000557066 580 ntTSL 3 BASIC12.34□□□□□ -0.43
GFRA1P56159 AC005154.1-232ENST00000582549 556 ntTSL 5 BASIC12.34□□□□□ -0.43
GFRA1P56159 MIR4472-1-201ENST00000584349 80 ntBASIC12.34□□□□□ -0.43
GFRA1P56159 AC005777.1-201ENST00000588332 187 ntBASIC12.34□□□□□ -0.43
GFRA1P56159 AC068675.1-201ENST00000588996 561 ntTSL 4 BASIC12.34□□□□□ -0.43
GFRA1P56159 AL136040.2-201ENST00000618431 1130 ntTSL 1 (best) BASIC12.34□□□□□ -0.43
GFRA1P56159 CCL3L3-203ENST00000619989 784 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
GFRA1P56159 AC009084.3-201ENST00000623356 437 ntBASIC12.34□□□□□ -0.43
GFRA1P56159 AL451007.2-201ENST00000632004 563 ntBASIC12.34□□□□□ -0.43
GFRA1P56159 CDH23-202ENST00000299366 3954 ntTSL 5 BASIC12.34□□□□□ -0.43
GFRA1P56159 ZFYVE19-215ENST00000570108 1669 ntAPPRIS ALT2 TSL 5 BASIC12.34□□□□□ -0.43
GFRA1P56159 PCDHGB7-201ENST00000398594 4765 ntAPPRIS P3 TSL 1 (best) BASIC12.34□□□□□ -0.43
GFRA1P56159 ALDH4A1-206ENST00000538839 2957 ntTSL 1 (best) BASIC12.34□□□□□ -0.43
GFRA1P56159 CYP51A1P3-201ENST00000400072 1428 ntBASIC12.34□□□□□ -0.43
GFRA1P56159 LIPE-AS1-204ENST00000594624 1448 ntTSL 1 (best) BASIC12.34□□□□□ -0.43
GFRA1P56159 COASY-202ENST00000421097 2071 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
GFRA1P56159 ZNF674-AS1-201ENST00000421685 2078 ntTSL 1 (best) BASIC12.34□□□□□ -0.43
GFRA1P56159 USP44-203ENST00000537435 2499 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
GFRA1P56159 RIN2-202ENST00000440354 1837 ntAPPRIS ALT2 TSL 1 (best) BASIC12.34□□□□□ -0.43
GFRA1P56159 EPS8L3-202ENST00000361965 1971 ntAPPRIS ALT1 TSL 1 (best) BASIC12.34□□□□□ -0.43
GFRA1P56159 AC239799.1-201ENST00000612520 3411 ntAPPRIS P1 TSL 5 BASIC12.34□□□□□ -0.43
GFRA1P56159 SMAGP-203ENST00000603798 2350 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
GFRA1P56159 CDH16-204ENST00000565796 2694 ntTSL 2 BASIC12.34□□□□□ -0.43
GFRA1P56159 AC024075.2-201ENST00000598112 1473 ntBASIC12.34□□□□□ -0.43
GFRA1P56159 DDC-207ENST00000444124 2041 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.43
GFRA1P56159 PRDM15-201ENST00000269844 4881 ntAPPRIS P3 TSL 1 (best) BASIC12.33□□□□□ -0.43
GFRA1P56159 CORO7-201ENST00000251166 3540 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.43
GFRA1P56159 CEP70-201ENST00000264982 2732 ntAPPRIS P3 TSL 1 (best) BASIC12.33□□□□□ -0.44
GFRA1P56159 RAPH1-202ENST00000319170 9808 ntAPPRIS P4 TSL 1 (best) BASIC12.33□□□□□ -0.44
GFRA1P56159 EML4-203ENST00000402711 3568 ntAPPRIS ALT2 TSL 1 (best) BASIC12.33□□□□□ -0.44
GFRA1P56159 LINC02135-201ENST00000599486 2065 ntTSL 1 (best) BASIC12.33□□□□□ -0.44
GFRA1P56159 NEK3-210ENST00000620675 2072 ntAPPRIS ALT2 TSL 5 BASIC12.33□□□□□ -0.44
GFRA1P56159 NELFA-202ENST00000382882 3343 ntTSL 1 (best) BASIC12.33□□□□□ -0.44
GFRA1P56159 ASS1-203ENST00000372393 1548 ntAPPRIS P1 TSL 5 BASIC12.33□□□□□ -0.44
GFRA1P56159 ACER2-201ENST00000340967 2238 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
GFRA1P56159 ABCC6P1-201ENST00000546162 2943 ntTSL 2 BASIC12.33□□□□□ -0.44
GFRA1P56159 RBPJ-206ENST00000361572 1697 ntTSL 1 (best) BASIC12.33□□□□□ -0.44
GFRA1P56159 NAALADL1-204ENST00000358658 2699 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
GFRA1P56159 PHTF2-206ENST00000422959 3525 ntAPPRIS P4 TSL 5 BASIC12.33□□□□□ -0.44
GFRA1P56159 COG5-202ENST00000347053 4532 ntAPPRIS ALT2 TSL 1 (best) BASIC12.33□□□□□ -0.44
GFRA1P56159 OSMR-201ENST00000274276 5539 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
GFRA1P56159 AL391647.1-201ENST00000395664 511 ntBASIC12.33□□□□□ -0.44
GFRA1P56159 AP000354.1-201ENST00000396982 456 ntBASIC12.33□□□□□ -0.44
GFRA1P56159 IFI35-203ENST00000415816 1241 ntAPPRIS ALT2 TSL 5 BASIC12.33□□□□□ -0.44
GFRA1P56159 FAM21EP-201ENST00000417804 985 ntBASIC12.33□□□□□ -0.44
GFRA1P56159 IFI35-204ENST00000438323 1232 ntAPPRIS P3 TSL 1 (best) BASIC12.33□□□□□ -0.44
GFRA1P56159 RORA-AS1-201ENST00000501579 761 ntTSL 5 BASIC12.33□□□□□ -0.44
GFRA1P56159 AADAT-206ENST00000509167 2113 ntAPPRIS ALT1 TSL 1 (best) BASIC12.33□□□□□ -0.44
GFRA1P56159 SNHG15-205ENST00000580458 710 ntTSL 2 BASIC12.33□□□□□ -0.44
GFRA1P56159 TUBB6-214ENST00000592683 481 ntTSL 4 BASIC12.33□□□□□ -0.44
GFRA1P56159 TMIGD2-204ENST00000600349 333 ntAPPRIS ALT2 TSL 1 (best) BASIC12.33□□□□□ -0.44
GFRA1P56159 AC010976.2-201ENST00000609697 852 ntBASIC12.33□□□□□ -0.44
GFRA1P56159 AC011471.3-201ENST00000623576 402 ntBASIC12.33□□□□□ -0.44
GFRA1P56159 LINC00431-202ENST00000636375 159 ntBASIC12.33□□□□□ -0.44
GFRA1P56159 AC092634.8-201ENST00000639687 773 ntTSL 5 BASIC12.33□□□□□ -0.44
GFRA1P56159 SERPINH1-205ENST00000525876 2283 ntTSL 2 BASIC12.33□□□□□ -0.44
GFRA1P56159 MANEA-AS1-201ENST00000564541 2268 ntBASIC12.33□□□□□ -0.44
GFRA1P56159 PPM1F-201ENST00000263212 5143 ntAPPRIS P2 TSL 1 (best) BASIC12.33□□□□□ -0.44
GFRA1P56159 ECI2-202ENST00000380118 1407 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
GFRA1P56159 COL8A2-201ENST00000303143 4447 ntAPPRIS P1 TSL 2 BASIC12.33□□□□□ -0.44
GFRA1P56159 PALD1-201ENST00000263563 4555 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
GFRA1P56159 PLEKHD1-201ENST00000322564 4865 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
GFRA1P56159 NUP210-201ENST00000254508 7193 ntAPPRIS P1 TSL 2 BASIC12.33□□□□□ -0.44
GFRA1P56159 SIGLECL1-201ENST00000316401 1708 ntAPPRIS P3 TSL 2 BASIC12.33□□□□□ -0.44
GFRA1P56159 PI4K2A-201ENST00000370631 4189 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
GFRA1P56159 CNOT7-211ENST00000523917 1885 ntTSL 2 BASIC12.33□□□□□ -0.44
GFRA1P56159 PATL2-208ENST00000560780 1863 ntAPPRIS ALT2 TSL 2 BASIC12.33□□□□□ -0.44
GFRA1P56159 DEDD-202ENST00000368006 2345 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
GFRA1P56159 KDR-201ENST00000263923 5831 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
GFRA1P56159 SPOCK3-202ENST00000357545 2936 ntAPPRIS P3 TSL 1 (best) BASIC12.33□□□□□ -0.44
GFRA1P56159 PSIP1-204ENST00000380738 3364 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
GFRA1P56159 AL359845.1-201ENST00000458202 1648 ntBASIC12.33□□□□□ -0.44
GFRA1P56159 AP003555.1-202ENST00000511013 1755 ntTSL 1 (best) BASIC12.33□□□□□ -0.44
GFRA1P56159 GUCY2EP-203ENST00000531117 1918 ntBASIC12.33□□□□□ -0.44
GFRA1P56159 PAPD7-207ENST00000631941 1902 ntAPPRIS P1 TSL 5 BASIC12.33□□□□□ -0.44
GFRA1P56159 ERICH6-201ENST00000295910 2052 ntAPPRIS P3 TSL 1 (best) BASIC12.33□□□□□ -0.44
GFRA1P56159 FOXP1-202ENST00000318789 7114 ntAPPRIS P3 TSL 1 (best) BASIC12.33□□□□□ -0.44
GFRA1P56159 FOXP1-222ENST00000615603 7140 ntTSL 5 BASIC12.33□□□□□ -0.44
GFRA1P56159 GPR68-203ENST00000531499 2859 ntAPPRIS P2 TSL 1 (best) BASIC12.32□□□□□ -0.44
GFRA1P56159 PRRT2-202ENST00000358758 2567 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
GFRA1P56159 KRT17P4-205ENST00000579946 2555 ntTSL 1 (best) BASIC12.32□□□□□ -0.44
GFRA1P56159 SRA1-201ENST00000336283 2107 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
GFRA1P56159 VAPB-202ENST00000395802 1834 ntTSL 1 (best) BASIC12.32□□□□□ -0.44
GFRA1P56159 IL17RD-201ENST00000296318 8720 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
GFRA1P56159 SREBF1-205ENST00000395757 3696 ntAPPRIS ALT2 TSL 2 BASIC12.32□□□□□ -0.44
GFRA1P56159 WASF3-202ENST00000361042 4823 ntTSL 1 (best) BASIC12.32□□□□□ -0.44
GFRA1P56159 KIAA1217-203ENST00000376452 6052 ntAPPRIS ALT2 TSL 1 (best) BASIC12.32□□□□□ -0.44
GFRA1P56159 LINC01922-202ENST00000567168 1704 ntTSL 1 (best) BASIC12.32□□□□□ -0.44
GFRA1P56159 AC004890.2-205ENST00000416232 2804 ntTSL 2 BASIC12.32□□□□□ -0.44
GFRA1P56159 PCTP-207ENST00000576183 2680 ntTSL 3 BASIC12.32□□□□□ -0.44
GFRA1P56159 PSMC3IP-201ENST00000253789 1408 ntTSL 1 (best) BASIC12.32□□□□□ -0.44
GFRA1P56159 PLXNB1-204ENST00000456774 5859 ntAPPRIS ALT2 TSL 1 (best) BASIC12.32□□□□□ -0.44
GFRA1P56159 C1R-201ENST00000535233 2211 ntTSL 2 BASIC12.32□□□□□ -0.44
GFRA1P56159 ABCG1-201ENST00000343687 3037 ntTSL 1 (best) BASIC12.32□□□□□ -0.44
GFRA1P56159 MORN2-201ENST00000340556 741 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
GFRA1P56159 GALP-201ENST00000357330 938 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
GFRA1P56159 SNU13-204ENST00000402458 462 ntTSL 3 BASIC12.32□□□□□ -0.44
GFRA1P56159 AL627389.1-201ENST00000413508 1182 ntBASIC12.32□□□□□ -0.44
GFRA1P56159 FAM92A-202ENST00000423990 914 ntTSL 5 BASIC12.32□□□□□ -0.44
GFRA1P56159 AC156455.1-203ENST00000423999 893 ntTSL 2 BASIC12.32□□□□□ -0.44
Retrieved 100 of 98,524 protein–RNA pairs in 35.4 ms