Protein–RNA interactions for Protein: Q709C8

VPS13C, Vacuolar protein sorting-associated protein 13C, humanhuman

Predictions only

Length 3,753 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13CQ709C8 AHCYP7-201ENST00000560847 1308 ntBASIC11.03□□□□□ -0.64
VPS13CQ709C8 TCAF1P1-201ENST00000414990 2232 ntBASIC11.03□□□□□ -0.64
VPS13CQ709C8 PBX1-219ENST00000560641 3225 ntTSL 5 BASIC11.03□□□□□ -0.64
VPS13CQ709C8 RUNX3-201ENST00000308873 3861 ntAPPRIS P3 TSL 1 (best) BASIC11.03□□□□□ -0.64
VPS13CQ709C8 MBOAT4-201ENST00000320542 1512 ntAPPRIS P1 TSL 1 (best) BASIC11.03□□□□□ -0.64
VPS13CQ709C8 EML4-203ENST00000402711 3568 ntAPPRIS ALT2 TSL 1 (best) BASIC11.03□□□□□ -0.64
VPS13CQ709C8 VHL-201ENST00000256474 3737 ntAPPRIS P1 TSL 1 (best) BASIC11.03□□□□□ -0.64
VPS13CQ709C8 LIMS1-204ENST00000409441 1627 ntAPPRIS ALT1 TSL 1 (best) BASIC11.03□□□□□ -0.64
VPS13CQ709C8 SLC6A6P1-201ENST00000413933 1850 ntBASIC11.03□□□□□ -0.64
VPS13CQ709C8 USP5-201ENST00000229268 3181 ntAPPRIS ALT1 TSL 1 (best) BASIC11.03□□□□□ -0.64
VPS13CQ709C8 SERF2-205ENST00000403425 690 ntTSL 2 BASIC11.03□□□□□ -0.64
VPS13CQ709C8 PTPA-219ENST00000435305 530 ntTSL 2 BASIC11.03□□□□□ -0.64
VPS13CQ709C8 AL359915.1-201ENST00000457719 898 ntTSL 2 BASIC11.03□□□□□ -0.64
VPS13CQ709C8 AC022447.6-201ENST00000515522 438 ntBASIC11.03□□□□□ -0.64
VPS13CQ709C8 HYAL2-208ENST00000447092 4054 ntAPPRIS P1 TSL 1 (best) BASIC11.03□□□□□ -0.64
VPS13CQ709C8 GOLGA8IP-202ENST00000611635 2100 ntBASIC11.03□□□□□ -0.64
VPS13CQ709C8 LDLRAD1-203ENST00000420619 2194 ntAPPRIS ALT2 TSL 1 (best) BASIC11.03□□□□□ -0.64
VPS13CQ709C8 AL391097.1-201ENST00000432706 1620 ntTSL 1 (best) BASIC11.03□□□□□ -0.64
VPS13CQ709C8 FAM238C-202ENST00000639963 1787 ntTSL 2 BASIC11.03□□□□□ -0.64
VPS13CQ709C8 FGFR3-203ENST00000352904 3733 ntTSL 1 (best) BASIC11.03□□□□□ -0.64
VPS13CQ709C8 AC004951.1-201ENST00000447643 1866 ntTSL 2 BASIC11.03□□□□□ -0.64
VPS13CQ709C8 NUP98-204ENST00000397004 3923 ntTSL 1 (best) BASIC11.03□□□□□ -0.64
VPS13CQ709C8 LINC00863-201ENST00000439559 3287 ntTSL 5 BASIC11.03□□□□□ -0.64
VPS13CQ709C8 NOMO1-201ENST00000287667 4355 ntAPPRIS P2 TSL 1 (best) BASIC11.03□□□□□ -0.64
VPS13CQ709C8 DNAJB8-202ENST00000469083 3365 ntAPPRIS P1 TSL 2 BASIC11.03□□□□□ -0.64
VPS13CQ709C8 EFR3B-205ENST00000405108 2432 ntTSL 1 (best) BASIC11.03□□□□□ -0.64
VPS13CQ709C8 EIF3F-201ENST00000309828 1254 ntAPPRIS P1 TSL 1 (best) BASIC11.03□□□□□ -0.64
VPS13CQ709C8 ABCD3-201ENST00000315713 884 ntTSL 1 (best) BASIC11.03□□□□□ -0.64
VPS13CQ709C8 OR2V2-201ENST00000328275 948 ntAPPRIS P1 BASIC11.03□□□□□ -0.64
VPS13CQ709C8 FAM138A-201ENST00000417324 1187 ntTSL 1 (best) BASIC11.03□□□□□ -0.64
VPS13CQ709C8 AC006967.2-201ENST00000426169 432 ntTSL 3 BASIC11.03□□□□□ -0.64
VPS13CQ709C8 FAM138D-201ENST00000504074 1187 ntTSL 1 (best) BASIC11.03□□□□□ -0.64
VPS13CQ709C8 FAM138E-201ENST00000507796 1187 ntTSL 1 (best) BASIC11.03□□□□□ -0.64
VPS13CQ709C8 DERL1-204ENST00000519018 575 ntTSL 4 BASIC11.03□□□□□ -0.64
VPS13CQ709C8 AC005096.1-201ENST00000560499 622 ntTSL 3 BASIC11.03□□□□□ -0.64
VPS13CQ709C8 SMIM22-206ENST00000589327 629 ntAPPRIS P4 TSL 1 (best) BASIC11.03□□□□□ -0.64
VPS13CQ709C8 APOBEC3A-205ENST00000618553 1103 ntAPPRIS P1 TSL 1 (best) BASIC11.03□□□□□ -0.64
VPS13CQ709C8 TMEM229B-201ENST00000357461 4068 ntAPPRIS P1 TSL 2 BASIC11.03□□□□□ -0.64
VPS13CQ709C8 VPS9D1-201ENST00000389386 2748 ntAPPRIS P2 TSL 1 (best) BASIC11.03□□□□□ -0.64
VPS13CQ709C8 IL1RAPL2-202ENST00000372582 2985 ntAPPRIS P1 TSL 1 (best) BASIC11.03□□□□□ -0.64
VPS13CQ709C8 LAMP2-201ENST00000200639 1867 ntAPPRIS P5 TSL 1 (best) BASIC11.03□□□□□ -0.64
VPS13CQ709C8 OS9-204ENST00000389146 2091 ntTSL 2 BASIC11.03□□□□□ -0.64
VPS13CQ709C8 GCOM1-214ENST00000587652 2329 ntAPPRIS ALT2 TSL 2 BASIC11.03□□□□□ -0.64
VPS13CQ709C8 GPR4-201ENST00000323040 3048 ntAPPRIS P1 TSL 1 (best) BASIC11.03□□□□□ -0.64
VPS13CQ709C8 KIAA1841-201ENST00000295031 3116 ntTSL 1 (best) BASIC11.03□□□□□ -0.64
VPS13CQ709C8 NLRP2B-201ENST00000434992 3194 ntAPPRIS P1 BASIC11.03□□□□□ -0.64
VPS13CQ709C8 FAM109A-201ENST00000361483 3256 ntAPPRIS ALT2 TSL 3 BASIC11.03□□□□□ -0.64
VPS13CQ709C8 ZFAND1-201ENST00000220669 1798 ntAPPRIS P3 TSL 1 (best) BASIC11.02□□□□□ -0.64
VPS13CQ709C8 PPP4R1L-201ENST00000244070 1474 ntTSL 1 (best) BASIC11.02□□□□□ -0.64
VPS13CQ709C8 HTR4-201ENST00000360693 3082 ntTSL 5 BASIC11.02□□□□□ -0.64
VPS13CQ709C8 L3MBTL1-206ENST00000427442 3157 ntAPPRIS ALT2 TSL 5 BASIC11.02□□□□□ -0.64
VPS13CQ709C8 MTND6P4-201ENST00000506002 522 ntBASIC11.02□□□□□ -0.64
VPS13CQ709C8 CREBRF-203ENST00000520420 1660 ntTSL 1 (best) BASIC11.02□□□□□ -0.64
VPS13CQ709C8 HNRNPA1P7-201ENST00000521273 963 ntBASIC11.02□□□□□ -0.64
VPS13CQ709C8 ZFAND1-221ENST00000523096 1778 ntAPPRIS ALT1 TSL 1 (best) BASIC11.02□□□□□ -0.64
VPS13CQ709C8 ALDOA-213ENST00000564595 1663 ntTSL 2 BASIC11.02□□□□□ -0.64
VPS13CQ709C8 ZNF821-214ENST00000565601 1858 ntAPPRIS P1 TSL 2 BASIC11.02□□□□□ -0.64
VPS13CQ709C8 GGA1-206ENST00000406772 3205 ntTSL 2 BASIC11.02□□□□□ -0.64
VPS13CQ709C8 ZNF274-210ENST00000610905 2559 ntAPPRIS P4 TSL 5 BASIC11.02□□□□□ -0.64
VPS13CQ709C8 LRRC17-202ENST00000339431 1963 ntAPPRIS P1 TSL 1 (best) BASIC11.02□□□□□ -0.65
VPS13CQ709C8 ARSH-201ENST00000381130 1875 ntAPPRIS P1 TSL 1 (best) BASIC11.02□□□□□ -0.65
VPS13CQ709C8 HNF1A-201ENST00000257555 3442 ntAPPRIS P1 TSL 1 (best) BASIC11.02□□□□□ -0.65
VPS13CQ709C8 TAF5-201ENST00000369839 3268 ntAPPRIS P1 TSL 1 (best) BASIC11.02□□□□□ -0.65
VPS13CQ709C8 DNPEP-205ENST00000373972 1578 ntTSL 2 BASIC11.02□□□□□ -0.65
VPS13CQ709C8 KIAA1191-201ENST00000298569 2991 ntAPPRIS P1 TSL 1 (best) BASIC11.02□□□□□ -0.65
VPS13CQ709C8 LTA-213ENST00000418386 1422 ntAPPRIS P1 TSL 1 (best) BASIC11.02□□□□□ -0.65
VPS13CQ709C8 PARVG-208ENST00000466375 820 ntTSL 2 BASIC11.02□□□□□ -0.65
VPS13CQ709C8 AC096713.1-201ENST00000514650 978 ntBASIC11.02□□□□□ -0.65
VPS13CQ709C8 AC044802.2-201ENST00000551187 434 ntTSL 1 (best) BASIC11.02□□□□□ -0.65
VPS13CQ709C8 DNM1P50-201ENST00000565767 508 ntBASIC11.02□□□□□ -0.65
VPS13CQ709C8 BMS1P8-203ENST00000567036 614 ntTSL 3 BASIC11.02□□□□□ -0.65
VPS13CQ709C8 SNHG15-202ENST00000577700 3116 ntTSL 2 BASIC11.02□□□□□ -0.65
VPS13CQ709C8 UHRF1-204ENST00000616255 2661 ntAPPRIS P1 TSL 1 (best) BASIC11.02□□□□□ -0.65
VPS13CQ709C8 CSF3-204ENST00000394149 1583 ntAPPRIS ALT2 TSL 1 (best) BASIC11.02□□□□□ -0.65
VPS13CQ709C8 SLC5A11-203ENST00000449109 2069 ntTSL 1 (best) BASIC11.02□□□□□ -0.65
VPS13CQ709C8 SNAP25-AS1-202ENST00000426491 804 ntTSL 5 BASIC11.02□□□□□ -0.65
VPS13CQ709C8 MAP1LC3BP1-202ENST00000438342 516 ntTSL 3 BASIC11.02□□□□□ -0.65
VPS13CQ709C8 NDUFC1-206ENST00000505036 809 ntAPPRIS P1 TSL 1 (best) BASIC11.02□□□□□ -0.65
VPS13CQ709C8 SPTY2D1-AS1-202ENST00000511927 573 ntAPPRIS ALT2 TSL 4 BASIC11.02□□□□□ -0.65
VPS13CQ709C8 BBOX1-AS1-203ENST00000530430 879 ntTSL 4 BASIC11.02□□□□□ -0.65
VPS13CQ709C8 BBOX1-AS1-204ENST00000531363 745 ntTSL 2 BASIC11.02□□□□□ -0.65
VPS13CQ709C8 BCAT2-203ENST00000545387 1272 ntTSL 1 (best) BASIC11.02□□□□□ -0.65
VPS13CQ709C8 GABARAPL2-203ENST00000565057 571 ntTSL 2 BASIC11.02□□□□□ -0.65
VPS13CQ709C8 AC005154.1-202ENST00000578293 999 ntTSL 5 BASIC11.02□□□□□ -0.65
VPS13CQ709C8 snoZ6.3-201ENST00000583496 76 ntBASIC11.02□□□□□ -0.65
VPS13CQ709C8 AC068675.1-201ENST00000588996 561 ntTSL 4 BASIC11.02□□□□□ -0.65
VPS13CQ709C8 ZNF674-AS1-202ENST00000609887 672 ntTSL 5 BASIC11.02□□□□□ -0.65
VPS13CQ709C8 SCFD1-203ENST00000458591 2359 ntAPPRIS P1 TSL 1 (best) BASIC11.02□□□□□ -0.65
VPS13CQ709C8 CCDC22-201ENST00000376227 2319 ntAPPRIS P1 TSL 1 (best) BASIC11.02□□□□□ -0.65
VPS13CQ709C8 AP1M2-201ENST00000250244 1749 ntAPPRIS P3 TSL 1 (best) BASIC11.02□□□□□ -0.65
VPS13CQ709C8 MEG3-214ENST00000519709 1726 ntTSL 5 BASIC11.02□□□□□ -0.65
VPS13CQ709C8 OR2A25-203ENST00000641663 1741 ntAPPRIS P1 BASIC11.02□□□□□ -0.65
VPS13CQ709C8 KCTD9-201ENST00000221200 3401 ntAPPRIS P1 TSL 1 (best) BASIC11.02□□□□□ -0.65
VPS13CQ709C8 ELMOD3-201ENST00000315658 2685 ntTSL 1 (best) BASIC11.02□□□□□ -0.65
VPS13CQ709C8 ZSCAN32-202ENST00000396846 3173 ntAPPRIS P1 TSL 1 (best) BASIC11.02□□□□□ -0.65
VPS13CQ709C8 SLC1A7-202ENST00000371494 2637 ntAPPRIS P3 TSL 1 (best) BASIC11.02□□□□□ -0.65
VPS13CQ709C8 MRPS9-201ENST00000258455 1500 ntAPPRIS P1 TSL 1 (best) BASIC11.02□□□□□ -0.65
VPS13CQ709C8 AC011298.1-201ENST00000407635 3398 ntTSL 2 BASIC11.02□□□□□ -0.65
VPS13CQ709C8 PPM1K-201ENST00000295908 1940 ntTSL 5 BASIC11.02□□□□□ -0.65
VPS13CQ709C8 STXBP1-201ENST00000373299 3765 ntAPPRIS P1 TSL 1 (best) BASIC11.02□□□□□ -0.65
Retrieved 100 of 98,524 protein–RNA pairs in 75.4 ms