Protein–RNA interactions for Protein: Q86TS7

LINC00643, Putative UPF0730 protein encoded by LINC00643, humanhuman

Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643Q86TS7 AC007608.4-201ENST00000623140 3365 ntBASIC8.5□□□□□ -1.05
LINC00643Q86TS7 HSPA4-201ENST00000304858 4825 ntAPPRIS P1 TSL 1 (best) BASIC8.5□□□□□ -1.05
LINC00643Q86TS7 LIN54-201ENST00000340417 6127 ntAPPRIS P1 TSL 1 (best) BASIC8.5□□□□□ -1.05
LINC00643Q86TS7 DDR1-224ENST00000376567 3832 ntAPPRIS P3 TSL 1 (best) BASIC8.5□□□□□ -1.05
LINC00643Q86TS7 OS9-202ENST00000315970 2691 ntAPPRIS P4 TSL 1 (best) BASIC8.5□□□□□ -1.05
LINC00643Q86TS7 KBTBD12-201ENST00000343941 4121 ntTSL 2 BASIC8.5□□□□□ -1.05
LINC00643Q86TS7 DEDD-210ENST00000490843 1527 ntAPPRIS P1 TSL 5 BASIC8.5□□□□□ -1.05
LINC00643Q86TS7 PCID2-204ENST00000375459 1668 ntTSL 2 BASIC8.5□□□□□ -1.05
LINC00643Q86TS7 RECQL5-204ENST00000423245 3576 ntTSL 1 (best) BASIC8.5□□□□□ -1.05
LINC00643Q86TS7 ZNRD1ASP-215ENST00000425604 1986 ntTSL 3 BASIC8.5□□□□□ -1.05
LINC00643Q86TS7 SAMHD1-201ENST00000262878 4784 ntAPPRIS P1 TSL 1 (best) BASIC8.5□□□□□ -1.05
LINC00643Q86TS7 LARP1-201ENST00000336314 6595 ntAPPRIS P1 TSL 1 (best) BASIC8.5□□□□□ -1.05
LINC00643Q86TS7 APOL5-201ENST00000249044 1438 ntAPPRIS P1 TSL 1 (best) BASIC8.5□□□□□ -1.05
LINC00643Q86TS7 CHMP4C-201ENST00000297265 1866 ntAPPRIS P1 TSL 1 (best) BASIC8.5□□□□□ -1.05
LINC00643Q86TS7 LCE1A-201ENST00000335123 422 ntAPPRIS P1 BASIC8.5□□□□□ -1.05
LINC00643Q86TS7 NPFFR2-202ENST00000344413 1234 ntTSL 1 (best) BASIC8.5□□□□□ -1.05
LINC00643Q86TS7 PRDX5-202ENST00000347941 463 ntTSL 1 (best) BASIC8.5□□□□□ -1.05
LINC00643Q86TS7 TCEAL3-203ENST00000372628 1221 ntAPPRIS P1 TSL 5 BASIC8.5□□□□□ -1.05
LINC00643Q86TS7 ALPL-203ENST00000374832 2193 ntAPPRIS P3 TSL 2 BASIC8.5□□□□□ -1.05
LINC00643Q86TS7 KMT5B-205ENST00000402789 1599 ntTSL 5 BASIC8.5□□□□□ -1.05
LINC00643Q86TS7 FO393414.2-201ENST00000405153 598 ntBASIC8.5□□□□□ -1.05
LINC00643Q86TS7 ARPC4-203ENST00000433034 926 ntTSL 3 BASIC8.5□□□□□ -1.05
LINC00643Q86TS7 AL669831.5-201ENST00000434264 844 ntTSL 5 BASIC8.5□□□□□ -1.05
LINC00643Q86TS7 MMP2-202ENST00000437642 2469 ntTSL 1 (best) BASIC8.5□□□□□ -1.05
LINC00643Q86TS7 DGUOK-AS1-203ENST00000453103 601 ntTSL 3 BASIC8.5□□□□□ -1.05
LINC00643Q86TS7 MUC1-212ENST00000457295 1161 ntAPPRIS ALT2 TSL 2 BASIC8.5□□□□□ -1.05
LINC00643Q86TS7 SNCB-205ENST00000510387 730 ntAPPRIS P1 TSL 2 BASIC8.5□□□□□ -1.05
LINC00643Q86TS7 RNA5SP413-201ENST00000516373 109 ntBASIC8.5□□□□□ -1.05
LINC00643Q86TS7 ARAP1-AS1-201ENST00000542022 388 ntTSL 5 BASIC8.5□□□□□ -1.05
LINC00643Q86TS7 AC007569.1-201ENST00000550306 600 ntTSL 3 BASIC8.5□□□□□ -1.05
LINC00643Q86TS7 NKAPP1-205ENST00000585790 367 ntBASIC8.5□□□□□ -1.05
LINC00643Q86TS7 AC073389.1-201ENST00000595595 795 ntBASIC8.5□□□□□ -1.05
LINC00643Q86TS7 AC097376.2-204ENST00000609359 627 ntTSL 2 BASIC8.5□□□□□ -1.05
LINC00643Q86TS7 AL031846.2-201ENST00000624656 3671 ntBASIC8.5□□□□□ -1.05
LINC00643Q86TS7 AL732314.6-201ENST00000627721 484 ntTSL 4 BASIC8.5□□□□□ -1.05
LINC00643Q86TS7 AC247036.6-201ENST00000632950 410 ntAPPRIS P1 BASIC8.5□□□□□ -1.05
LINC00643Q86TS7 TUB-202ENST00000305253 6420 ntTSL 1 (best) BASIC8.5□□□□□ -1.05
LINC00643Q86TS7 STX3-207ENST00000633708 3111 ntTSL 5 BASIC8.5□□□□□ -1.05
LINC00643Q86TS7 ABCC5-201ENST00000265586 5712 ntTSL 5 BASIC8.5□□□□□ -1.05
LINC00643Q86TS7 TBCEL-202ENST00000422003 5142 ntAPPRIS P1 TSL 1 (best) BASIC8.5□□□□□ -1.05
LINC00643Q86TS7 AC010201.2-201ENST00000605595 1495 ntBASIC8.5□□□□□ -1.05
LINC00643Q86TS7 SPTB-208ENST00000556626 10153 ntTSL 1 (best) BASIC8.5□□□□□ -1.05
LINC00643Q86TS7 ZFP64-202ENST00000346617 2876 ntTSL 2 BASIC8.5□□□□□ -1.05
LINC00643Q86TS7 KIRREL1-201ENST00000359209 2874 ntAPPRIS P1 TSL 1 (best) BASIC8.5□□□□□ -1.05
LINC00643Q86TS7 RD3-201ENST00000367002 4266 ntAPPRIS P1 TSL 1 (best) BASIC8.5□□□□□ -1.05
LINC00643Q86TS7 NUTM2A-201ENST00000381689 3974 ntAPPRIS ALT2 TSL 5 BASIC8.5□□□□□ -1.05
LINC00643Q86TS7 GDI2-203ENST00000380191 2412 ntAPPRIS P1 TSL 1 (best) BASIC8.5□□□□□ -1.05
LINC00643Q86TS7 SERPINA3-204ENST00000482740 2420 ntTSL 1 (best) BASIC8.5□□□□□ -1.05
LINC00643Q86TS7 C1orf94-201ENST00000373374 2136 ntTSL 1 (best) BASIC8.5□□□□□ -1.05
LINC00643Q86TS7 CNN2-207ENST00000565096 2109 ntTSL 2 BASIC8.5□□□□□ -1.05
LINC00643Q86TS7 AC021517.1-202ENST00000585897 2111 ntTSL 5 BASIC8.5□□□□□ -1.05
LINC00643Q86TS7 RGL1-201ENST00000304685 5100 ntAPPRIS P3 TSL 1 (best) BASIC8.5□□□□□ -1.05
LINC00643Q86TS7 ERICH3-201ENST00000326665 7159 ntAPPRIS P2 TSL 5 BASIC8.5□□□□□ -1.05
LINC00643Q86TS7 REL-201ENST00000295025 11255 ntAPPRIS P3 TSL 1 (best) BASIC8.5□□□□□ -1.05
LINC00643Q86TS7 PDLIM5-202ENST00000318007 1960 ntTSL 1 (best) BASIC8.5□□□□□ -1.05
LINC00643Q86TS7 CORO1C-201ENST00000261401 3892 ntAPPRIS P1 TSL 1 (best) BASIC8.5□□□□□ -1.05
LINC00643Q86TS7 ABRA-201ENST00000311955 2755 ntAPPRIS P1 TSL 1 (best) BASIC8.5□□□□□ -1.05
LINC00643Q86TS7 TEF-202ENST00000406644 4386 ntTSL 2 BASIC8.5□□□□□ -1.05
LINC00643Q86TS7 AGPAT1-206ENST00000395499 2496 ntAPPRIS P1 TSL 5 BASIC8.49□□□□□ -1.05
LINC00643Q86TS7 BTF3L4-201ENST00000313334 4703 ntAPPRIS P2 TSL 1 (best) BASIC8.49□□□□□ -1.05
LINC00643Q86TS7 TUBA3E-201ENST00000312988 1542 ntAPPRIS P1 TSL 1 (best) BASIC8.49□□□□□ -1.05
LINC00643Q86TS7 DXO-203ENST00000375356 1533 ntAPPRIS P1 TSL 1 (best) BASIC8.49□□□□□ -1.05
LINC00643Q86TS7 AC003986.1-201ENST00000452700 1526 ntTSL 1 (best) BASIC8.49□□□□□ -1.05
LINC00643Q86TS7 TUSC3-204ENST00000506802 1546 ntTSL 5 BASIC8.49□□□□□ -1.05
LINC00643Q86TS7 NFIX-208ENST00000587260 1537 ntTSL 1 (best) BASIC8.49□□□□□ -1.05
LINC00643Q86TS7 TGS1-201ENST00000260129 3782 ntAPPRIS P1 TSL 1 (best) BASIC8.49□□□□□ -1.05
LINC00643Q86TS7 TRAF3IP2-208ENST00000392556 2188 ntTSL 1 (best) BASIC8.49□□□□□ -1.05
LINC00643Q86TS7 SNX29-205ENST00000566228 8171 ntAPPRIS P1 TSL 5 BASIC8.49□□□□□ -1.05
LINC00643Q86TS7 IL36RN-201ENST00000346807 2672 ntAPPRIS P1 TSL 1 (best) BASIC8.49□□□□□ -1.05
LINC00643Q86TS7 UBE2G1-201ENST00000396981 3974 ntAPPRIS P1 TSL 1 (best) BASIC8.49□□□□□ -1.05
LINC00643Q86TS7 TIAM2-212ENST00000529824 5262 ntTSL 5 BASIC8.49□□□□□ -1.05
LINC00643Q86TS7 ZIK1-201ENST00000307468 2510 ntTSL 1 (best) BASIC8.49□□□□□ -1.05
LINC00643Q86TS7 PCYOX1-204ENST00000433351 5345 ntAPPRIS P1 TSL 1 (best) BASIC8.49□□□□□ -1.05
LINC00643Q86TS7 KCNJ3-203ENST00000544049 4523 ntTSL 1 (best) BASIC8.49□□□□□ -1.05
LINC00643Q86TS7 CEACAM19-201ENST00000358777 2249 ntAPPRIS ALT2 TSL 1 (best) BASIC8.49□□□□□ -1.05
LINC00643Q86TS7 TRIM2-209ENST00000494872 2202 ntTSL 1 (best) BASIC8.49□□□□□ -1.05
LINC00643Q86TS7 SEMA4A-202ENST00000368282 3249 ntAPPRIS P1 TSL 1 (best) BASIC8.49□□□□□ -1.05
LINC00643Q86TS7 CHIT1-201ENST00000255427 1598 ntTSL 2 BASIC8.49□□□□□ -1.05
LINC00643Q86TS7 PRKACG-201ENST00000377276 1585 ntAPPRIS P1 BASIC8.49□□□□□ -1.05
LINC00643Q86TS7 ADAM28-202ENST00000437154 2085 ntTSL 1 (best) BASIC8.49□□□□□ -1.05
LINC00643Q86TS7 DIRAS1-201ENST00000323469 3424 ntAPPRIS P1 TSL 1 (best) BASIC8.49□□□□□ -1.05
LINC00643Q86TS7 BTNL3-201ENST00000342868 2440 ntAPPRIS P1 TSL 1 (best) BASIC8.49□□□□□ -1.05
LINC00643Q86TS7 ECM1-203ENST00000369049 1925 ntAPPRIS ALT2 TSL 2 BASIC8.49□□□□□ -1.05
LINC00643Q86TS7 AC008676.1-201ENST00000508443 1932 ntTSL 5 BASIC8.49□□□□□ -1.05
LINC00643Q86TS7 AC245140.2-201ENST00000624054 1939 ntBASIC8.49□□□□□ -1.05
LINC00643Q86TS7 MFSD6-202ENST00000392328 4797 ntAPPRIS P1 TSL 2 BASIC8.49□□□□□ -1.05
LINC00643Q86TS7 KCNQ2-201ENST00000344425 1426 ntTSL 1 (best) BASIC8.49□□□□□ -1.05
LINC00643Q86TS7 ACTRT2-201ENST00000378404 1421 ntAPPRIS P1 BASIC8.49□□□□□ -1.05
LINC00643Q86TS7 TIA1-206ENST00000445587 1440 ntTSL 5 BASIC8.49□□□□□ -1.05
LINC00643Q86TS7 TOM1L2-209ENST00000540946 1420 ntTSL 2 BASIC8.49□□□□□ -1.05
LINC00643Q86TS7 LINC00905-203ENST00000588838 1414 ntTSL 1 (best) BASIC8.49□□□□□ -1.05
LINC00643Q86TS7 PHC2-204ENST00000431992 3789 ntAPPRIS ALT2 TSL 1 (best) BASIC8.49□□□□□ -1.05
LINC00643Q86TS7 AP000356.2-201ENST00000639904 4634 ntTSL 1 (best) BASIC8.49□□□□□ -1.05
LINC00643Q86TS7 CDH5-201ENST00000341529 4120 ntAPPRIS P1 TSL 1 (best) BASIC8.49□□□□□ -1.05
LINC00643Q86TS7 AL139274.2-201ENST00000606274 4127 ntBASIC8.49□□□□□ -1.05
LINC00643Q86TS7 HERC2P2-201ENST00000613386 5181 ntBASIC8.49□□□□□ -1.05
LINC00643Q86TS7 ASTL-201ENST00000342380 1296 ntAPPRIS P1 TSL 1 (best) BASIC8.49□□□□□ -1.05
LINC00643Q86TS7 COMTD1-201ENST00000372538 976 ntAPPRIS P1 TSL 1 (best) BASIC8.49□□□□□ -1.05
LINC00643Q86TS7 OR5C1-201ENST00000373680 963 ntAPPRIS P1 BASIC8.49□□□□□ -1.05
LINC00643Q86TS7 PIGP-203ENST00000399098 972 ntTSL 1 (best) BASIC8.49□□□□□ -1.05
Retrieved 100 of 98,524 protein–RNA pairs in 50.4 ms