RNA–Protein interactions for RNA: ENST00000341529.7

CDH5-201, Transcript of cadherin 5, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CDH5, Length 4,120 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH5-201ENST00000341529 NISCHQ9Y2I1 1504 aa21.59■■□□□ 1.05
CDH5-201ENST00000341529 DCAF8L2P0C7V8 631 aa21.38■■□□□ 1.01
CDH5-201ENST00000341529 SUPT5HO00267 1087 aaKnown RBP20.71■□□□□ 0.91
CDH5-201ENST00000341529 SHROOM4Q9ULL8 1493 aa20.63■□□□□ 0.89
CDH5-201ENST00000341529 EHMT2Q96KQ7 1210 aa19.99■□□□□ 0.79
CDH5-201ENST00000341529 FAM9AQ8IZU1 332 aaPredicted RBP19.5■□□□□ 0.71
CDH5-201ENST00000341529 PCGF6Q9BYE7 350 aa19.41■□□□□ 0.7
CDH5-201ENST00000341529 TTBK1Q5TCY1 1321 aaPredicted RBP19.25■□□□□ 0.67
CDH5-201ENST00000341529 TRIM41Q8WV44 630 aa18.94■□□□□ 0.62
CDH5-201ENST00000341529 PPARGC1BQ86YN6 1023 aaKnown RBP18.93■□□□□ 0.62
CDH5-201ENST00000341529 LOC105371045A0A1W2PR82 267 aa18.92■□□□□ 0.62
CDH5-201ENST00000341529 RANGAP1P46060 587 aaPredicted RBP18.89■□□□□ 0.62
CDH5-201ENST00000341529 CHIC1Q5VXU3 224 aa18.83■□□□□ 0.6
CDH5-201ENST00000341529 ABCC9O60706 1549 aa18.65■□□□□ 0.58
CDH5-201ENST00000341529 APLP2Q06481 763 aa18.58■□□□□ 0.56
CDH5-201ENST00000341529 CCER1Q8TC90 406 aaPredicted RBP18.55■□□□□ 0.56
CDH5-201ENST00000341529 UBTFP17480 764 aaKnown RBP18.53■□□□□ 0.56
CDH5-201ENST00000341529 HRCP23327 699 aa18.51■□□□□ 0.55
CDH5-201ENST00000341529 PABPN1Q86U42 306 aaKnown RBP eCLIP18.48■□□□□ 0.55
CDH5-201ENST00000341529 TRIM26Q12899 539 aaPredicted RBP18.38■□□□□ 0.53
CDH5-201ENST00000341529 ATP1B4Q9UN42 357 aaPredicted RBP18.31■□□□□ 0.52
CDH5-201ENST00000341529 YTHDC1Q96MU7 727 aaKnown RBP18.25■□□□□ 0.51
CDH5-201ENST00000341529 ZEB1P37275 1124 aaPredicted RBP18.24■□□□□ 0.51
CDH5-201ENST00000341529 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP18.16■□□□□ 0.5
CDH5-201ENST00000341529 HNRNPUL2Q1KMD3 747 aaKnown RBP18.11■□□□□ 0.49
CDH5-201ENST00000341529 ITGAEP38570 1179 aa18.08■□□□□ 0.48
CDH5-201ENST00000341529 CENPBP07199 599 aaPredicted RBP18.01■□□□□ 0.47
CDH5-201ENST00000341529 ZCCHC6Q5VYS8 1495 aaKnown RBP17.9■□□□□ 0.46
CDH5-201ENST00000341529 SCRIBQ14160 1630 aa17.84■□□□□ 0.45
CDH5-201ENST00000341529 MYO15BQ96JP2 1530 aa17.8■□□□□ 0.44
CDH5-201ENST00000341529 PELP1Q8IZL8 1130 aaKnown RBP17.78■□□□□ 0.44
CDH5-201ENST00000341529 DIEXFQ68CQ4 756 aaKnown RBP17.7■□□□□ 0.42
CDH5-201ENST00000341529 CNGB1Q14028 1251 aaPredicted RBP17.66■□□□□ 0.42
CDH5-201ENST00000341529 CCDC180Q9P1Z9 1646 aa17.56■□□□□ 0.4
CDH5-201ENST00000341529 CSRNP3Q8WYN3 585 aa17.52■□□□□ 0.39
CDH5-201ENST00000341529 POLR3GLQ9BT43 218 aa17.5■□□□□ 0.39
CDH5-201ENST00000341529 FAM50AQ14320 339 aaKnown RBP17.49■□□□□ 0.39
CDH5-201ENST00000341529 P3H3Q8IVL6 736 aa17.46■□□□□ 0.39
CDH5-201ENST00000341529 NEUROD1Q13562 356 aa17.45■□□□□ 0.38
CDH5-201ENST00000341529 GTF3C3Q9Y5Q9 886 aa17.45■□□□□ 0.38
CDH5-201ENST00000341529 NEFLP07196 543 aa17.4■□□□□ 0.38
CDH5-201ENST00000341529 ARID3CA6NKF2 412 aa17.36■□□□□ 0.37
CDH5-201ENST00000341529 RSF1Q96T23 1441 aaPredicted RBP17.35■□□□□ 0.37
CDH5-201ENST00000341529 DCAF1Q9Y4B6 1507 aa17.34■□□□□ 0.37
CDH5-201ENST00000341529 CECR2Q9BXF3 1484 aa17.31■□□□□ 0.36
CDH5-201ENST00000341529 BCANQ96GW7 911 aa17.29■□□□□ 0.36
CDH5-201ENST00000341529 ZNF316A6NFI3 1004 aaPredicted RBP17.29■□□□□ 0.36
CDH5-201ENST00000341529 FBLN2P98095 1184 aa17.28■□□□□ 0.36
CDH5-201ENST00000341529 ERICH6Q7L0X2 663 aa17.27■□□□□ 0.36
CDH5-201ENST00000341529 TRIM52Q96A61 297 aa17.2■□□□□ 0.34
CDH5-201ENST00000341529 ACIN1Q9UKV3 1341 aaKnown RBP17.2■□□□□ 0.34
CDH5-201ENST00000341529 MYT1LQ9UL68 1186 aa17.14■□□□□ 0.33
CDH5-201ENST00000341529 ZNF326Q5BKZ1 582 aaKnown RBP17.11■□□□□ 0.33
CDH5-201ENST00000341529 SCAF1Q9H7N4 1312 aaKnown RBP17.1■□□□□ 0.33
CDH5-201ENST00000341529 RB1CC1Q8TDY2 1594 aa17.09■□□□□ 0.33
CDH5-201ENST00000341529 HIRIP3Q9BW71 556 aaPredicted RBP17.05■□□□□ 0.32
CDH5-201ENST00000341529 MIER1Q8N108 512 aa17.02■□□□□ 0.31
CDH5-201ENST00000341529 NACADO15069 1562 aa16.99■□□□□ 0.31
CDH5-201ENST00000341529 DDX10Q13206 875 aaKnown RBP16.97■□□□□ 0.31
CDH5-201ENST00000341529 MROH2BQ7Z745 1585 aa16.96■□□□□ 0.31
CDH5-201ENST00000341529 CEP162Q5TB80 1403 aa16.96■□□□□ 0.31
CDH5-201ENST00000341529 CLIP1P30622 1438 aa16.92■□□□□ 0.3
CDH5-201ENST00000341529 CHIC2Q9UKJ5 165 aa16.92■□□□□ 0.3
CDH5-201ENST00000341529 ANP32CO43423 234 aa16.91■□□□□ 0.3
CDH5-201ENST00000341529 ZNF777Q9ULD5 760 aaPredicted RBP16.9■□□□□ 0.3
CDH5-201ENST00000341529 SOGA1O94964 1423 aa16.9■□□□□ 0.3
CDH5-201ENST00000341529 SLC4A1APQ9BWU0 796 aaKnown RBP16.84■□□□□ 0.29
CDH5-201ENST00000341529 WRNQ14191 1432 aaPredicted RBP eCLIP16.82■□□□□ 0.28
CDH5-201ENST00000341529 BAZ1BQ9UIG0 1483 aaKnown RBP16.81■□□□□ 0.28
CDH5-201ENST00000341529 SENP3-EIF4A1A0A087X0R7 540 aa16.78■□□□□ 0.28
CDH5-201ENST00000341529 FKBP8Q14318 412 aa16.77■□□□□ 0.28
CDH5-201ENST00000341529 ABCC8Q09428 1581 aa16.77■□□□□ 0.27
CDH5-201ENST00000341529 CCDC88BA6NC98 1476 aa16.74■□□□□ 0.27
CDH5-201ENST00000341529 BAZ1AQ9NRL2 1556 aaPredicted RBP16.73■□□□□ 0.27
CDH5-201ENST00000341529 TNIKQ9UKE5 1360 aa16.72■□□□□ 0.27
CDH5-201ENST00000341529 WIZO95785 1651 aa16.72■□□□□ 0.27
CDH5-201ENST00000341529 GOLGA3Q08378 1498 aa16.71■□□□□ 0.27
CDH5-201ENST00000341529 SIN3AQ96ST3 1273 aa16.7■□□□□ 0.26
CDH5-201ENST00000341529 TONSLQ96HA7 1378 aa16.7■□□□□ 0.26
CDH5-201ENST00000341529 RRP7BPQ9NSQ0 103 aa16.7■□□□□ 0.26
CDH5-201ENST00000341529 IRX6P78412 446 aaPredicted RBP16.69■□□□□ 0.26
CDH5-201ENST00000341529 HNRNPUQ00839 825 aaKnown RBP eCLIP16.69■□□□□ 0.26
CDH5-201ENST00000341529 FAM9BQ8IZU0 186 aa16.68■□□□□ 0.26
CDH5-201ENST00000341529 SALL2Q9Y467 1007 aaPredicted RBP16.67■□□□□ 0.26
CDH5-201ENST00000341529 KANK4Q5T7N3 995 aaPredicted RBP16.64■□□□□ 0.26
CDH5-201ENST00000341529 MYT1Q01538 1121 aa16.62■□□□□ 0.25
CDH5-201ENST00000341529 MTUS2Q5JR59 1369 aa16.6■□□□□ 0.25
CDH5-201ENST00000341529 EEA1Q15075 1411 aa16.58■□□□□ 0.24
CDH5-201ENST00000341529 CHMP7Q8WUX9 453 aaPredicted RBP16.57■□□□□ 0.24
CDH5-201ENST00000341529 RUSC2Q8N2Y8 1516 aa16.56■□□□□ 0.24
CDH5-201ENST00000341529 KDM2AQ9Y2K7 1162 aa16.56■□□□□ 0.24
CDH5-201ENST00000341529 DAXXQ9UER7 740 aaPredicted RBP16.56■□□□□ 0.24
CDH5-201ENST00000341529 CDK11AQ9UQ88 783 aaPredicted RBP16.55■□□□□ 0.24
CDH5-201ENST00000341529 CEP164Q9UPV0 1460 aa16.55■□□□□ 0.24
CDH5-201ENST00000341529 CLSPNQ9HAW4 1339 aa16.54■□□□□ 0.24
CDH5-201ENST00000341529 GRWD1Q9BQ67 446 aaKnown RBP eCLIP16.54■□□□□ 0.24
CDH5-201ENST00000341529 BCL11AQ9H165 835 aa16.52■□□□□ 0.23
CDH5-201ENST00000341529 SENP3Q9H4L4 574 aaPredicted RBP16.5■□□□□ 0.23
CDH5-201ENST00000341529 KIF27Q86VH2 1401 aa16.49■□□□□ 0.23
CDH5-201ENST00000341529 MRS2Q9HD23 443 aa16.46■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms