RNA–Protein interactions for RNA: ENST00000367002.4

RD3-201, Transcript of retinal degeneration 3, GUCY2D regulator, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene RD3, Length 4,266 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RD3-201ENST00000367002 DCAF8L2P0C7V8 631 aa19.83■□□□□ 0.77
RD3-201ENST00000367002 NISCHQ9Y2I1 1504 aa19.68■□□□□ 0.74
RD3-201ENST00000367002 SUPT5HO00267 1087 aaKnown RBP19.26■□□□□ 0.67
RD3-201ENST00000367002 SHROOM4Q9ULL8 1493 aa18.95■□□□□ 0.62
RD3-201ENST00000367002 EHMT2Q96KQ7 1210 aa18.43■□□□□ 0.54
RD3-201ENST00000367002 PCGF6Q9BYE7 350 aa18.21■□□□□ 0.51
RD3-201ENST00000367002 FAM9AQ8IZU1 332 aaPredicted RBP18.11■□□□□ 0.49
RD3-201ENST00000367002 APLP2Q06481 763 aa17.84■□□□□ 0.45
RD3-201ENST00000367002 TTBK1Q5TCY1 1321 aaPredicted RBP17.83■□□□□ 0.44
RD3-201ENST00000367002 TRIM41Q8WV44 630 aa17.8■□□□□ 0.44
RD3-201ENST00000367002 PELP1Q8IZL8 1130 aaKnown RBP17.69■□□□□ 0.42
RD3-201ENST00000367002 ZEB1P37275 1124 aaPredicted RBP17.68■□□□□ 0.42
RD3-201ENST00000367002 CCER1Q8TC90 406 aaPredicted RBP17.61■□□□□ 0.41
RD3-201ENST00000367002 RANGAP1P46060 587 aaPredicted RBP17.52■□□□□ 0.4
RD3-201ENST00000367002 CENPBP07199 599 aaPredicted RBP17.51■□□□□ 0.39
RD3-201ENST00000367002 CHIC1Q5VXU3 224 aa17.48■□□□□ 0.39
RD3-201ENST00000367002 HRCP23327 699 aa17.48■□□□□ 0.39
RD3-201ENST00000367002 UBTFP17480 764 aaKnown RBP17.44■□□□□ 0.38
RD3-201ENST00000367002 TRIM26Q12899 539 aaPredicted RBP17.42■□□□□ 0.38
RD3-201ENST00000367002 PPARGC1BQ86YN6 1023 aaKnown RBP17.42■□□□□ 0.38
RD3-201ENST00000367002 LOC105371045A0A1W2PR82 267 aa17.42■□□□□ 0.38
RD3-201ENST00000367002 YTHDC1Q96MU7 727 aaKnown RBP17.21■□□□□ 0.35
RD3-201ENST00000367002 ATP1B4Q9UN42 357 aaPredicted RBP17.21■□□□□ 0.34
RD3-201ENST00000367002 ERICH6Q7L0X2 663 aa16.95■□□□□ 0.3
RD3-201ENST00000367002 HNRNPUL2Q1KMD3 747 aaKnown RBP16.94■□□□□ 0.3
RD3-201ENST00000367002 NEFLP07196 543 aa16.94■□□□□ 0.3
RD3-201ENST00000367002 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP16.93■□□□□ 0.3
RD3-201ENST00000367002 ITGAEP38570 1179 aa16.89■□□□□ 0.29
RD3-201ENST00000367002 MYT1Q01538 1121 aa16.79■□□□□ 0.28
RD3-201ENST00000367002 DIEXFQ68CQ4 756 aaKnown RBP16.79■□□□□ 0.28
RD3-201ENST00000367002 ABCC9O60706 1549 aa16.62■□□□□ 0.25
RD3-201ENST00000367002 PABPN1Q86U42 306 aaKnown RBP eCLIP16.53■□□□□ 0.24
RD3-201ENST00000367002 POLR3GLQ9BT43 218 aa16.53■□□□□ 0.24
RD3-201ENST00000367002 GTF3C3Q9Y5Q9 886 aa16.52■□□□□ 0.24
RD3-201ENST00000367002 CNGB1Q14028 1251 aaPredicted RBP16.48■□□□□ 0.23
RD3-201ENST00000367002 FAM50AQ14320 339 aaKnown RBP16.43■□□□□ 0.22
RD3-201ENST00000367002 ZNF316A6NFI3 1004 aaPredicted RBP16.41■□□□□ 0.22
RD3-201ENST00000367002 CSRNP3Q8WYN3 585 aa16.4■□□□□ 0.22
RD3-201ENST00000367002 NEUROD1Q13562 356 aa16.37■□□□□ 0.21
RD3-201ENST00000367002 ACIN1Q9UKV3 1341 aaKnown RBP16.35■□□□□ 0.21
RD3-201ENST00000367002 ZCCHC6Q5VYS8 1495 aaKnown RBP16.34■□□□□ 0.21
RD3-201ENST00000367002 DCAF1Q9Y4B6 1507 aa16.31■□□□□ 0.2
RD3-201ENST00000367002 BCANQ96GW7 911 aa16.28■□□□□ 0.2
RD3-201ENST00000367002 TRIM52Q96A61 297 aa16.25■□□□□ 0.19
RD3-201ENST00000367002 MYT1LQ9UL68 1186 aa16.25■□□□□ 0.19
RD3-201ENST00000367002 DAXXQ9UER7 740 aaPredicted RBP16.24■□□□□ 0.19
RD3-201ENST00000367002 ANP32CO43423 234 aa16.19■□□□□ 0.18
RD3-201ENST00000367002 MYO15BQ96JP2 1530 aa16.15■□□□□ 0.18
RD3-201ENST00000367002 P3H3Q8IVL6 736 aa16.14■□□□□ 0.17
RD3-201ENST00000367002 ZNF326Q5BKZ1 582 aaKnown RBP16.07■□□□□ 0.16
RD3-201ENST00000367002 SCRIBQ14160 1630 aa16.07■□□□□ 0.16
RD3-201ENST00000367002 RTL5Q5HYW3 569 aaPredicted RBP16.04■□□□□ 0.16
RD3-201ENST00000367002 CDK11AQ9UQ88 783 aaPredicted RBP16.02■□□□□ 0.15
RD3-201ENST00000367002 SLC4A1APQ9BWU0 796 aaKnown RBP16.01■□□□□ 0.15
RD3-201ENST00000367002 SCAF1Q9H7N4 1312 aaKnown RBP16■□□□□ 0.15
RD3-201ENST00000367002 CLSPNQ9HAW4 1339 aa15.99■□□□□ 0.15
RD3-201ENST00000367002 ARID3CA6NKF2 412 aa15.97■□□□□ 0.15
RD3-201ENST00000367002 DDX10Q13206 875 aaKnown RBP15.94■□□□□ 0.14
RD3-201ENST00000367002 RSF1Q96T23 1441 aaPredicted RBP15.92■□□□□ 0.14
RD3-201ENST00000367002 MIER1Q8N108 512 aa15.91■□□□□ 0.14
RD3-201ENST00000367002 FBLN2P98095 1184 aa15.91■□□□□ 0.14
RD3-201ENST00000367002 FKBP8Q14318 412 aa15.9■□□□□ 0.14
RD3-201ENST00000367002 CCDC180Q9P1Z9 1646 aa15.85■□□□□ 0.13
RD3-201ENST00000367002 TONSLQ96HA7 1378 aa15.85■□□□□ 0.13
RD3-201ENST00000367002 HNRNPUQ00839 825 aaKnown RBP eCLIP15.82■□□□□ 0.12
RD3-201ENST00000367002 CLIP1P30622 1438 aa15.81■□□□□ 0.12
RD3-201ENST00000367002 ZNF777Q9ULD5 760 aaPredicted RBP15.8■□□□□ 0.12
RD3-201ENST00000367002 CEP162Q5TB80 1403 aa15.77■□□□□ 0.11
RD3-201ENST00000367002 FAM9BQ8IZU0 186 aa15.74■□□□□ 0.11
RD3-201ENST00000367002 HIRIP3Q9BW71 556 aaPredicted RBP15.74■□□□□ 0.11
RD3-201ENST00000367002 CHIC2Q9UKJ5 165 aa15.73■□□□□ 0.11
RD3-201ENST00000367002 ANP32AP39687 249 aaKnown RBP15.7■□□□□ 0.1
RD3-201ENST00000367002 EEA1Q15075 1411 aa15.69■□□□□ 0.1
RD3-201ENST00000367002 TNIKQ9UKE5 1360 aa15.65■□□□□ 0.1
RD3-201ENST00000367002 GOLGA3Q08378 1498 aa15.65■□□□□ 0.1
RD3-201ENST00000367002 NPM2Q86SE8 214 aaKnown RBP15.65■□□□□ 0.1
RD3-201ENST00000367002 CANXP27824 592 aaKnown RBP15.63■□□□□ 0.09
RD3-201ENST00000367002 SALL2Q9Y467 1007 aaPredicted RBP15.62■□□□□ 0.09
RD3-201ENST00000367002 MTUS2Q5JR59 1369 aa15.61■□□□□ 0.09
RD3-201ENST00000367002 WRNQ14191 1432 aaPredicted RBP eCLIP15.61■□□□□ 0.09
RD3-201ENST00000367002 MRS2Q9HD23 443 aa15.61■□□□□ 0.09
RD3-201ENST00000367002 IRX6P78412 446 aaPredicted RBP15.58■□□□□ 0.09
RD3-201ENST00000367002 TMC1Q8TDI8 760 aa15.58■□□□□ 0.09
RD3-201ENST00000367002 CCDC136Q96JN2 1154 aa15.56■□□□□ 0.08
RD3-201ENST00000367002 BCL11AQ9H165 835 aa15.55■□□□□ 0.08
RD3-201ENST00000367002 CECR2Q9BXF3 1484 aa15.55■□□□□ 0.08
RD3-201ENST00000367002 RRP7BPQ9NSQ0 103 aa15.54■□□□□ 0.08
RD3-201ENST00000367002 EIF4G2P78344 907 aaKnown RBP eCLIP15.54■□□□□ 0.08
RD3-201ENST00000367002 ZBTB47Q9UFB7 747 aaPredicted RBP15.53■□□□□ 0.08
RD3-201ENST00000367002 RB1CC1Q8TDY2 1594 aa15.51■□□□□ 0.07
RD3-201ENST00000367002 KDM2AQ9Y2K7 1162 aa15.5■□□□□ 0.07
RD3-201ENST00000367002 CEP164Q9UPV0 1460 aa15.5■□□□□ 0.07
RD3-201ENST00000367002 TSPY4P0CV99 314 aa15.48■□□□□ 0.07
RD3-201ENST00000367002 TSPY10P0CW01 314 aa15.48■□□□□ 0.07
RD3-201ENST00000367002 SIN3AQ96ST3 1273 aa15.47■□□□□ 0.07
RD3-201ENST00000367002 NEFMP07197 916 aa15.47■□□□□ 0.07
RD3-201ENST00000367002 SOGA1O94964 1423 aa15.47■□□□□ 0.07
RD3-201ENST00000367002 GRWD1Q9BQ67 446 aaKnown RBP eCLIP15.46■□□□□ 0.07
RD3-201ENST00000367002 NACADO15069 1562 aa15.44■□□□□ 0.06
RD3-201ENST00000367002 CHGAP10645 457 aaKnown RBP15.43■□□□□ 0.06
Retrieved 100 of 20,778 RNA–protein pairs in 22 ms