Protein–RNA interactions for Protein: P04114

APOB, Apolipoprotein B-100, humanhuman

Known RBP Predictions only

Length 4,563 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
APOBP04114 AC023886.1-202ENST00000504009 477 ntTSL 3 BASIC8.23□□□□□ -1.09
APOBP04114 FXYD6-202ENST00000524656 1033 ntAPPRIS P2 TSL 3 BASIC8.23□□□□□ -1.09
APOBP04114 CSRP1-219ENST00000533432 1149 ntAPPRIS P1 TSL 2 BASIC8.23□□□□□ -1.09
APOBP04114 MPI-212ENST00000565576 1148 ntTSL 2 BASIC8.23□□□□□ -1.09
APOBP04114 MEGF10-202ENST00000418761 2238 ntTSL 1 (best) BASIC8.23□□□□□ -1.09
APOBP04114 CARMIL2-201ENST00000334583 4687 ntAPPRIS P3 TSL 1 (best) BASIC8.23□□□□□ -1.09
APOBP04114 ARVCF-203ENST00000406259 2871 ntAPPRIS ALT2 TSL 5 BASIC8.23□□□□□ -1.09
APOBP04114 MGRN1-211ENST00000588994 1665 ntTSL 1 (best) BASIC8.23□□□□□ -1.09
APOBP04114 EXO5-203ENST00000372703 2567 ntAPPRIS P1 TSL 2 BASIC8.23□□□□□ -1.09
APOBP04114 DDX56-201ENST00000258772 2336 ntAPPRIS P1 TSL 1 (best) BASIC8.23□□□□□ -1.09
APOBP04114 WASHC1-201ENST00000442898 1827 ntAPPRIS P1 TSL 2 BASIC8.23□□□□□ -1.09
APOBP04114 EPB41L3-207ENST00000545076 3190 ntAPPRIS ALT2 TSL 2 BASIC8.23□□□□□ -1.09
APOBP04114 POM121L14P-201ENST00000406100 1558 ntBASIC8.23□□□□□ -1.09
APOBP04114 ARHGEF1-219ENST00000599846 3393 ntAPPRIS ALT2 TSL 5 BASIC8.23□□□□□ -1.09
APOBP04114 GNAO1-201ENST00000262493 3337 ntAPPRIS P5 TSL 1 (best) BASIC8.23□□□□□ -1.09
APOBP04114 KRT20-201ENST00000167588 1737 ntAPPRIS P1 TSL 1 (best) BASIC8.23□□□□□ -1.09
APOBP04114 MED15-204ENST00000406969 3210 ntTSL 1 (best) BASIC8.23□□□□□ -1.09
APOBP04114 JAML-202ENST00000356289 1944 ntAPPRIS ALT2 TSL 1 (best) BASIC8.23□□□□□ -1.09
APOBP04114 NCBP2-204ENST00000427641 1946 ntTSL 2 BASIC8.23□□□□□ -1.09
APOBP04114 OR6N1-201ENST00000335094 1027 ntAPPRIS P1 BASIC8.23□□□□□ -1.09
APOBP04114 RPS15P5-201ENST00000449885 432 ntBASIC8.23□□□□□ -1.09
APOBP04114 CMTM1-206ENST00000457188 765 ntAPPRIS ALT2 TSL 1 (best) BASIC8.23□□□□□ -1.09
APOBP04114 FLNC-AS1-201ENST00000469965 559 ntTSL 4 BASIC8.23□□□□□ -1.09
APOBP04114 CMTM1-215ENST00000531885 590 ntAPPRIS ALT2 TSL 1 (best) BASIC8.23□□□□□ -1.09
APOBP04114 OVOL1-AS1-203ENST00000534178 493 ntTSL 2 BASIC8.23□□□□□ -1.09
APOBP04114 AL136115.2-201ENST00000602889 587 ntTSL 5 BASIC8.23□□□□□ -1.09
APOBP04114 TTC28-AS1_1.1-201ENST00000614690 162 ntBASIC8.23□□□□□ -1.09
APOBP04114 BSCL2-203ENST00000360796 1683 ntAPPRIS ALT2 TSL 1 (best) BASIC8.23□□□□□ -1.09
APOBP04114 CEP135-202ENST00000422247 2092 ntTSL 2 BASIC8.23□□□□□ -1.09
APOBP04114 SLC4A3-204ENST00000373760 4134 ntAPPRIS P1 TSL 5 BASIC8.23□□□□□ -1.09
APOBP04114 AC015802.1-201ENST00000588104 1449 ntBASIC8.23□□□□□ -1.09
APOBP04114 ELF2-201ENST00000358635 3036 ntTSL 1 (best) BASIC8.23□□□□□ -1.09
APOBP04114 ZNF180-202ENST00000391956 3049 ntAPPRIS ALT2 TSL 2 BASIC8.23□□□□□ -1.09
APOBP04114 LINC00937-207ENST00000544461 3033 ntTSL 2 BASIC8.23□□□□□ -1.09
APOBP04114 HOMEZ-201ENST00000357460 4971 ntAPPRIS P2 TSL 1 (best) BASIC8.23□□□□□ -1.09
APOBP04114 GUCY1A3-213ENST00000621234 1788 ntTSL 5 BASIC8.23□□□□□ -1.09
APOBP04114 PARP10-201ENST00000313028 3497 ntAPPRIS P3 TSL 1 (best) BASIC8.23□□□□□ -1.09
APOBP04114 GOLGA2P7-202ENST00000400817 2850 ntTSL 1 (best) BASIC8.23□□□□□ -1.09
APOBP04114 CREB5-203ENST00000396299 2294 ntTSL 1 (best) BASIC8.22□□□□□ -1.09
APOBP04114 HTR4-203ENST00000377888 2962 ntAPPRIS P1 TSL 1 (best) BASIC8.22□□□□□ -1.09
APOBP04114 SENP6-202ENST00000370010 4644 ntAPPRIS P3 TSL 1 (best) BASIC8.22□□□□□ -1.09
APOBP04114 LRP8-202ENST00000347547 2382 ntTSL 1 (best) BASIC8.22□□□□□ -1.09
APOBP04114 SNRNP27-201ENST00000244227 1802 ntAPPRIS P1 TSL 1 (best) BASIC8.22□□□□□ -1.09
APOBP04114 PRDX1-203ENST00000372079 609 ntTSL 3 BASIC8.22□□□□□ -1.09
APOBP04114 ANO7-203ENST00000402530 894 ntTSL 1 (best) BASIC8.22□□□□□ -1.09
APOBP04114 INO80C-203ENST00000441607 904 ntTSL 2 BASIC8.22□□□□□ -1.09
APOBP04114 AC246680.1-201ENST00000444624 494 ntTSL 3 BASIC8.22□□□□□ -1.09
APOBP04114 SLC22A18AS-201ENST00000455942 697 ntAPPRIS P2 TSL 1 (best) BASIC8.22□□□□□ -1.09
APOBP04114 SPATA24-204ENST00000507779 606 ntTSL 5 BASIC8.22□□□□□ -1.09
APOBP04114 WASIR2-201ENST00000527434 1054 ntTSL 1 (best) BASIC8.22□□□□□ -1.09
APOBP04114 AC022211.3-201ENST00000584339 400 ntTSL 3 BASIC8.22□□□□□ -1.09
APOBP04114 AC105105.4-201ENST00000610389 713 ntBASIC8.22□□□□□ -1.09
APOBP04114 DDX50-206ENST00000610822 2510 ntTSL 5 BASIC8.22□□□□□ -1.09
APOBP04114 NUB1-212ENST00000568733 3210 ntAPPRIS ALT2 TSL 1 (best) BASIC8.22□□□□□ -1.09
APOBP04114 DIRC2-201ENST00000261038 3596 ntAPPRIS P1 TSL 1 (best) BASIC8.22□□□□□ -1.09
APOBP04114 RGS6-202ENST00000355512 1564 ntAPPRIS ALT1 TSL 1 (best) BASIC8.22□□□□□ -1.09
APOBP04114 DYDC2-204ENST00000372199 2254 ntAPPRIS P3 TSL 1 (best) BASIC8.22□□□□□ -1.09
APOBP04114 SIGLEC6-201ENST00000343300 1746 ntAPPRIS ALT2 TSL 1 (best) BASIC8.22□□□□□ -1.09
APOBP04114 OR2A25-203ENST00000641663 1741 ntAPPRIS P1 BASIC8.22□□□□□ -1.09
APOBP04114 RCAN2-203ENST00000371374 3327 ntTSL 1 (best) BASIC8.22□□□□□ -1.09
APOBP04114 TFE3-201ENST00000315869 3415 ntAPPRIS P1 TSL 1 (best) BASIC8.22□□□□□ -1.09
APOBP04114 AC017081.1-201ENST00000420063 823 ntBASIC8.22□□□□□ -1.09
APOBP04114 MT1G-204ENST00000569500 305 ntTSL 3 BASIC8.22□□□□□ -1.09
APOBP04114 RPL37A-212ENST00000600880 425 ntTSL 2 BASIC8.22□□□□□ -1.09
APOBP04114 Metazoa_SRP.85-201ENST00000610909 260 ntBASIC8.22□□□□□ -1.09
APOBP04114 C2orf27AP1-201ENST00000618128 586 ntBASIC8.22□□□□□ -1.09
APOBP04114 PAX2-202ENST00000361791 3193 ntAPPRIS ALT1 TSL 2 BASIC8.22□□□□□ -1.09
APOBP04114 SLC2A11-223ENST00000611880 3264 ntTSL 2 BASIC8.22□□□□□ -1.09
APOBP04114 SIRPG-205ENST00000381583 1383 ntTSL 5 BASIC8.22□□□□□ -1.09
APOBP04114 DCAKD-201ENST00000310604 2122 ntAPPRIS P1 TSL 5 BASIC8.22□□□□□ -1.09
APOBP04114 AKT1S1-205ENST00000391833 3640 ntAPPRIS P1 TSL 2 BASIC8.22□□□□□ -1.09
APOBP04114 DDX43-201ENST00000370336 2513 ntAPPRIS P1 TSL 1 (best) BASIC8.22□□□□□ -1.09
APOBP04114 PPM1M-203ENST00000409502 1790 ntTSL 1 (best) BASIC8.22□□□□□ -1.09
APOBP04114 AP000897.1-201ENST00000584036 1613 ntBASIC8.22□□□□□ -1.09
APOBP04114 ERN2-202ENST00000457008 3169 ntAPPRIS ALT2 TSL 1 (best) BASIC8.22□□□□□ -1.09
APOBP04114 SHTN1-204ENST00000392903 2400 ntAPPRIS ALT2 TSL 1 (best) BASIC8.22□□□□□ -1.09
APOBP04114 METTL5-203ENST00000392640 800 ntAPPRIS P2 TSL 1 (best) BASIC8.22□□□□□ -1.09
APOBP04114 AC087163.1-201ENST00000430089 381 ntBASIC8.22□□□□□ -1.09
APOBP04114 PIN1P1-202ENST00000439639 301 ntBASIC8.22□□□□□ -1.09
APOBP04114 AC106748.1-201ENST00000454801 384 ntBASIC8.22□□□□□ -1.09
APOBP04114 SSR3-202ENST00000463503 596 ntTSL 4 BASIC8.22□□□□□ -1.09
APOBP04114 AC022447.2-201ENST00000509750 543 ntTSL 3 BASIC8.22□□□□□ -1.09
APOBP04114 COPZ1-207ENST00000549116 736 ntTSL 2 BASIC8.22□□□□□ -1.09
APOBP04114 ZKSCAN4-201ENST00000377294 2375 ntAPPRIS P1 TSL 1 (best) BASIC8.22□□□□□ -1.09
APOBP04114 FARS2-201ENST00000274680 1663 ntAPPRIS P1 TSL 1 (best) BASIC8.22□□□□□ -1.09
APOBP04114 GAP43-201ENST00000305124 1691 ntAPPRIS P1 TSL 1 (best) BASIC8.22□□□□□ -1.09
APOBP04114 C3orf58-201ENST00000315691 4346 ntAPPRIS P1 TSL 1 (best) BASIC8.22□□□□□ -1.09
APOBP04114 JAML-211ENST00000533261 1508 ntTSL 5 BASIC8.22□□□□□ -1.09
APOBP04114 E2F6-212ENST00000546212 3191 ntTSL 1 (best) BASIC8.22□□□□□ -1.09
APOBP04114 AL138762.1-201ENST00000608554 1637 ntBASIC8.22□□□□□ -1.09
APOBP04114 TNFSF13-202ENST00000349228 2036 ntTSL 1 (best) BASIC8.22□□□□□ -1.09
APOBP04114 TATDN3-202ENST00000366974 2389 ntAPPRIS P3 TSL 1 (best) BASIC8.22□□□□□ -1.09
APOBP04114 WNT16-201ENST00000222462 3147 ntAPPRIS P1 TSL 1 (best) BASIC8.22□□□□□ -1.09
APOBP04114 CAMK2B-202ENST00000346990 1448 ntTSL 1 (best) BASIC8.22□□□□□ -1.09
APOBP04114 TMUB2-212ENST00000589785 1918 ntAPPRIS P3 TSL 2 BASIC8.22□□□□□ -1.09
APOBP04114 AC010997.3-201ENST00000418818 502 ntTSL 3 BASIC8.22□□□□□ -1.09
APOBP04114 AC016650.1-201ENST00000502834 708 ntTSL 2 BASIC8.22□□□□□ -1.09
APOBP04114 AC121757.1-201ENST00000552441 624 ntTSL 5 BASIC8.22□□□□□ -1.09
APOBP04114 AC127496.3-201ENST00000576032 494 ntTSL 3 BASIC8.22□□□□□ -1.09
APOBP04114 AP005264.6-203ENST00000586882 1050 ntTSL 5 BASIC8.22□□□□□ -1.09
Retrieved 100 of 98,524 protein–RNA pairs in 43.4 ms