Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 SNRPA1-216ENST00000626000 539 ntTSL 5 BASIC13.45□□□□□ -0.26
COL28A1Q2UY09 AP000769.1-203ENST00000637245 208 ntBASIC13.45□□□□□ -0.26
COL28A1Q2UY09 MVK-217ENST00000639206 367 ntTSL 5 BASIC13.45□□□□□ -0.26
COL28A1Q2UY09 RBFADN-204ENST00000568911 5187 ntTSL 2 BASIC13.45□□□□□ -0.26
COL28A1Q2UY09 ITGB2-208ENST00000397857 2813 ntAPPRIS P1 TSL 5 BASIC13.45□□□□□ -0.26
COL28A1Q2UY09 CHRD-206ENST00000450923 3384 ntAPPRIS ALT2 TSL 1 (best) BASIC13.45□□□□□ -0.26
COL28A1Q2UY09 THUMPD3-AS1-212ENST00000520447 1809 ntTSL 5 BASIC13.45□□□□□ -0.26
COL28A1Q2UY09 PKM-220ENST00000568459 1806 ntAPPRIS ALT1 TSL 1 (best) BASIC13.45□□□□□ -0.26
COL28A1Q2UY09 LGALS12-202ENST00000340246 1425 ntAPPRIS ALT2 TSL 1 (best) BASIC13.45□□□□□ -0.26
COL28A1Q2UY09 TPM4-202ENST00000344824 1417 ntAPPRIS P1 TSL 5 BASIC13.45□□□□□ -0.26
COL28A1Q2UY09 PRKD2-202ENST00000433867 3321 ntAPPRIS P3 TSL 5 BASIC13.45□□□□□ -0.26
COL28A1Q2UY09 AGPAT3-218ENST00000546158 2199 ntAPPRIS P1 TSL 5 BASIC13.45□□□□□ -0.26
COL28A1Q2UY09 AL591623.1-201ENST00000417786 1960 ntTSL 1 (best) BASIC13.45□□□□□ -0.26
COL28A1Q2UY09 HOXC11-202ENST00000546378 3261 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
COL28A1Q2UY09 RGS6-217ENST00000555571 1764 ntAPPRIS P3 TSL 1 (best) BASIC13.45□□□□□ -0.26
COL28A1Q2UY09 ACIN1-201ENST00000262710 4935 ntAPPRIS P3 TSL 1 (best) BASIC13.45□□□□□ -0.26
COL28A1Q2UY09 AL590440.2-201ENST00000641973 1595 ntBASIC13.45□□□□□ -0.26
COL28A1Q2UY09 MYADML-201ENST00000474610 2147 ntBASIC13.45□□□□□ -0.26
COL28A1Q2UY09 PLA2G3-201ENST00000215885 2697 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
COL28A1Q2UY09 CCNH-201ENST00000256897 1378 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
COL28A1Q2UY09 MINDY4B-201ENST00000465419 1383 ntAPPRIS P1 TSL 5 BASIC13.45□□□□□ -0.26
COL28A1Q2UY09 PHLDB2-204ENST00000431670 6127 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
COL28A1Q2UY09 KCNT1-209ENST00000490355 3708 ntAPPRIS ALT2 TSL 5 BASIC13.44□□□□□ -0.26
COL28A1Q2UY09 TET3-201ENST00000305799 5174 ntTSL 5 BASIC13.44□□□□□ -0.26
COL28A1Q2UY09 C1orf43-206ENST00000368521 1708 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
COL28A1Q2UY09 FBXL21-202ENST00000467490 1742 ntTSL 1 (best) BASIC13.44□□□□□ -0.26
COL28A1Q2UY09 ZNF747-202ENST00000395094 3504 ntTSL 1 (best) BASIC13.44□□□□□ -0.26
COL28A1Q2UY09 CEP295NL-201ENST00000322630 2090 ntTSL 2 BASIC13.44□□□□□ -0.26
COL28A1Q2UY09 TM9SF1-202ENST00000396854 2055 ntTSL 1 (best) BASIC13.44□□□□□ -0.26
COL28A1Q2UY09 PLK2-201ENST00000274289 2960 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
COL28A1Q2UY09 ALDH3B1-201ENST00000342456 2786 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
COL28A1Q2UY09 SYCP2L-201ENST00000283141 3130 ntAPPRIS P2 TSL 1 (best) BASIC13.44□□□□□ -0.26
COL28A1Q2UY09 GFRA1-201ENST00000355422 2583 ntAPPRIS ALT2 TSL 5 BASIC13.44□□□□□ -0.26
COL28A1Q2UY09 IARS2-201ENST00000366922 3560 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
COL28A1Q2UY09 SPO11-203ENST00000371263 1834 ntAPPRIS P4 TSL 1 (best) BASIC13.44□□□□□ -0.26
COL28A1Q2UY09 SLC7A8-212ENST00000529705 1819 ntTSL 2 BASIC13.44□□□□□ -0.26
COL28A1Q2UY09 ELOVL1-201ENST00000372458 1477 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
COL28A1Q2UY09 SOCS2-205ENST00000548537 3733 ntTSL 2 BASIC13.44□□□□□ -0.26
COL28A1Q2UY09 PRDM10-204ENST00000423662 5998 ntTSL 1 (best) BASIC13.44□□□□□ -0.26
COL28A1Q2UY09 LRRFIP1-204ENST00000392000 3365 ntTSL 1 (best) BASIC13.44□□□□□ -0.26
COL28A1Q2UY09 TTLL10-AS1-201ENST00000379317 3532 ntTSL 2 BASIC13.44□□□□□ -0.26
COL28A1Q2UY09 UPK1A-201ENST00000222275 1223 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
COL28A1Q2UY09 HFE-201ENST00000309234 1158 ntAPPRIS ALT2 TSL 2 BASIC13.44□□□□□ -0.26
COL28A1Q2UY09 Metazoa_SRP.6-201ENST00000366384 298 ntBASIC13.44□□□□□ -0.26
COL28A1Q2UY09 TREM2-202ENST00000373113 1044 ntAPPRIS P3 TSL 1 (best) BASIC13.44□□□□□ -0.26
COL28A1Q2UY09 UPK1A-202ENST00000379013 1016 ntTSL 1 (best) BASIC13.44□□□□□ -0.26
COL28A1Q2UY09 LINC01022-201ENST00000415652 394 ntTSL 3 BASIC13.44□□□□□ -0.26
COL28A1Q2UY09 FAM197Y6-201ENST00000420524 766 ntBASIC13.44□□□□□ -0.26
COL28A1Q2UY09 OR2R1P-201ENST00000441404 914 ntBASIC13.44□□□□□ -0.26
COL28A1Q2UY09 AC093484.1-201ENST00000441875 477 ntTSL 5 BASIC13.44□□□□□ -0.26
COL28A1Q2UY09 AC092295.1-201ENST00000446262 434 ntTSL 3 BASIC13.44□□□□□ -0.26
COL28A1Q2UY09 LINC00892-203ENST00000454385 686 ntTSL 3 BASIC13.44□□□□□ -0.26
COL28A1Q2UY09 AC128689.1-202ENST00000459861 827 ntTSL 3 BASIC13.44□□□□□ -0.26
COL28A1Q2UY09 MUSTN1-202ENST00000486659 622 ntTSL 2 BASIC13.44□□□□□ -0.26
COL28A1Q2UY09 AC097381.2-201ENST00000510640 859 ntTSL 2 BASIC13.44□□□□□ -0.26
COL28A1Q2UY09 YPEL4-209ENST00000534711 889 ntAPPRIS P1 TSL 5 BASIC13.44□□□□□ -0.26
COL28A1Q2UY09 RPL18-205ENST00000549273 1036 ntTSL 2 BASIC13.44□□□□□ -0.26
COL28A1Q2UY09 KRT8P1-201ENST00000557533 1207 ntBASIC13.44□□□□□ -0.26
COL28A1Q2UY09 AC013553.1-201ENST00000560906 267 ntBASIC13.44□□□□□ -0.26
COL28A1Q2UY09 AC012593.1-214ENST00000586952 767 ntTSL 5 BASIC13.44□□□□□ -0.26
COL28A1Q2UY09 STAT5A-208ENST00000587646 1022 ntTSL 1 (best) BASIC13.44□□□□□ -0.26
COL28A1Q2UY09 RPL18A-204ENST00000599898 491 ntTSL 2 BASIC13.44□□□□□ -0.26
COL28A1Q2UY09 AL450487.2-201ENST00000615934 407 ntBASIC13.44□□□□□ -0.26
COL28A1Q2UY09 SEZ6-201ENST00000317338 4471 ntAPPRIS P4 TSL 1 (best) BASIC13.44□□□□□ -0.26
COL28A1Q2UY09 GPRASP1-203ENST00000444152 5809 ntAPPRIS P1 TSL 3 BASIC13.44□□□□□ -0.26
COL28A1Q2UY09 NOC2L-201ENST00000327044 2790 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
COL28A1Q2UY09 ALDH4A1-205ENST00000538309 1940 ntTSL 2 BASIC13.44□□□□□ -0.26
COL28A1Q2UY09 HTR3A-205ENST00000504030 2432 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
COL28A1Q2UY09 TGIF2-201ENST00000373872 3406 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
COL28A1Q2UY09 DNAJC22-202ENST00000549441 4412 ntAPPRIS P1 TSL 2 BASIC13.44□□□□□ -0.26
COL28A1Q2UY09 TTC28-AS1-212ENST00000433317 3080 ntTSL 5 BASIC13.44□□□□□ -0.26
COL28A1Q2UY09 LDB3-204ENST00000372066 1598 ntTSL 1 (best) BASIC13.44□□□□□ -0.26
COL28A1Q2UY09 PCDHB3-201ENST00000231130 3355 ntAPPRIS P1 BASIC13.44□□□□□ -0.26
COL28A1Q2UY09 IKZF1-218ENST00000615491 5637 ntTSL 5 BASIC13.44□□□□□ -0.26
COL28A1Q2UY09 VIPR1-202ENST00000433647 3161 ntTSL 2 BASIC13.44□□□□□ -0.26
COL28A1Q2UY09 PRNP-201ENST00000379440 2657 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
COL28A1Q2UY09 PCK2-216ENST00000561286 2012 ntTSL 2 BASIC13.44□□□□□ -0.26
COL28A1Q2UY09 ACSM2A-209ENST00000573854 2837 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
COL28A1Q2UY09 CORO7-222ENST00000574025 2826 ntTSL 2 BASIC13.44□□□□□ -0.26
COL28A1Q2UY09 PHF14-201ENST00000403050 4276 ntTSL 1 (best) BASIC13.44□□□□□ -0.26
COL28A1Q2UY09 CES1-203ENST00000422046 2178 ntAPPRIS ALT1 TSL 1 (best) BASIC13.44□□□□□ -0.26
COL28A1Q2UY09 TAOK2-204ENST00000543033 4072 ntTSL 1 (best) BASIC13.44□□□□□ -0.26
COL28A1Q2UY09 MPZL1-203ENST00000392121 3421 ntTSL 2 BASIC13.44□□□□□ -0.26
COL28A1Q2UY09 WAC-AS1-202ENST00000528337 2608 ntTSL 1 (best) BASIC13.43□□□□□ -0.26
COL28A1Q2UY09 MINDY1-207ENST00000622754 2637 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
COL28A1Q2UY09 AL121757.1-201ENST00000430097 1836 ntTSL 1 (best) BASIC13.43□□□□□ -0.26
COL28A1Q2UY09 VIPAS39-202ENST00000343765 2761 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
COL28A1Q2UY09 RAB18-207ENST00000535776 4811 ntTSL 2 BASIC13.43□□□□□ -0.26
COL28A1Q2UY09 IL1RAP-209ENST00000422940 1957 ntTSL 1 (best) BASIC13.43□□□□□ -0.26
COL28A1Q2UY09 AC113189.2-201ENST00000575310 1975 ntTSL 2 BASIC13.43□□□□□ -0.26
COL28A1Q2UY09 PHYHIP-202ENST00000454243 3200 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
COL28A1Q2UY09 NUBPL-201ENST00000281081 3049 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
COL28A1Q2UY09 BEND6-203ENST00000370748 3497 ntTSL 1 (best) BASIC13.43□□□□□ -0.26
COL28A1Q2UY09 KHSRPP1-201ENST00000427983 1768 ntBASIC13.43□□□□□ -0.26
COL28A1Q2UY09 DENND3-211ENST00000519811 5482 ntAPPRIS ALT2 TSL 5 BASIC13.43□□□□□ -0.26
COL28A1Q2UY09 NFYC-215ENST00000456393 1911 ntAPPRIS ALT1 TSL 1 (best) BASIC13.43□□□□□ -0.26
COL28A1Q2UY09 SGK2-204ENST00000373100 2225 ntAPPRIS P1 TSL 5 BASIC13.43□□□□□ -0.26
COL28A1Q2UY09 PPT1-213ENST00000641319 2388 ntBASIC13.43□□□□□ -0.26
COL28A1Q2UY09 KIRREL1-204ENST00000368173 7519 ntTSL 2 BASIC13.43□□□□□ -0.26
COL28A1Q2UY09 TRMT1-201ENST00000221504 2179 ntAPPRIS ALT2 TSL 1 (best) BASIC13.43□□□□□ -0.26
Retrieved 100 of 98,524 protein–RNA pairs in 59.8 ms