Protein–RNA interactions for Protein: P28702

RXRB, Retinoic acid receptor RXR-beta, humanhuman

Predictions only

Length 533 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RXRBP28702 ABTB1-206ENST00000468137 2065 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
RXRBP28702 NRIP1-203ENST00000400202 7671 ntAPPRIS P1 TSL 5 BASIC17.57■□□□□ 0.4
RXRBP28702 ABLIM3-206ENST00000506113 4569 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
RXRBP28702 CDC25A-202ENST00000351231 3663 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
RXRBP28702 SEC23A-203ENST00000545328 2734 ntTSL 2 BASIC17.56■□□□□ 0.4
RXRBP28702 TLK2-201ENST00000326270 3512 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
RXRBP28702 MAGED4-211ENST00000599522 2669 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
RXRBP28702 SPHK2-210ENST00000599748 2683 ntAPPRIS ALT2 TSL 1 (best) BASIC17.56■□□□□ 0.4
RXRBP28702 ZDHHC8-201ENST00000320602 3072 ntTSL 5 BASIC17.56■□□□□ 0.4
RXRBP28702 PSMD13-201ENST00000352303 1427 ntTSL 5 BASIC17.56■□□□□ 0.4
RXRBP28702 SLC29A1-205ENST00000371740 2219 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
RXRBP28702 AIDA-201ENST00000340020 3008 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
RXRBP28702 IQCD-201ENST00000299732 1369 ntAPPRIS P3 TSL 1 (best) BASIC17.56■□□□□ 0.4
RXRBP28702 POR-218ENST00000461988 2522 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
RXRBP28702 ATG9A-205ENST00000409618 4025 ntAPPRIS P1 TSL 5 BASIC17.56■□□□□ 0.4
RXRBP28702 COMP-201ENST00000222271 2461 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
RXRBP28702 SFSWAP-210ENST00000541286 3219 ntAPPRIS ALT2 TSL 1 (best) BASIC17.56■□□□□ 0.4
RXRBP28702 TPD52L3-203ENST00000381428 1321 ntAPPRIS ALT2 TSL 1 (best) BASIC17.56■□□□□ 0.4
RXRBP28702 LUC7L-203ENST00000397780 1335 ntTSL 5 BASIC17.56■□□□□ 0.4
RXRBP28702 ZNF582-201ENST00000301310 2824 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
RXRBP28702 TTC34-201ENST00000401095 8814 ntAPPRIS ALT2 TSL 5 BASIC17.56■□□□□ 0.4
RXRBP28702 ATP6V1H-202ENST00000359530 2007 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
RXRBP28702 PITPNM1-202ENST00000436757 4216 ntAPPRIS ALT1 TSL 1 (best) BASIC17.56■□□□□ 0.4
RXRBP28702 NKIRAS1-208ENST00000443659 2391 ntAPPRIS P2 TSL 5 BASIC17.56■□□□□ 0.4
RXRBP28702 OBP2A-203ENST00000371776 689 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
RXRBP28702 C1orf158-201ENST00000376210 695 ntTSL 3 BASIC17.56■□□□□ 0.4
RXRBP28702 IGKV6-21-201ENST00000390256 406 ntAPPRIS P1 BASIC17.56■□□□□ 0.4
RXRBP28702 AL354707.1-204ENST00000451142 846 ntTSL 2 BASIC17.56■□□□□ 0.4
RXRBP28702 KIAA1191-211ENST00000533553 560 ntTSL 3 BASIC17.56■□□□□ 0.4
RXRBP28702 C14orf132-201ENST00000553764 562 ntTSL 4 BASIC17.56■□□□□ 0.4
RXRBP28702 AC005154.1-204ENST00000580902 926 ntTSL 4 BASIC17.56■□□□□ 0.4
RXRBP28702 CIRBP-AS1-201ENST00000585832 994 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
RXRBP28702 AC025048.4-201ENST00000589740 699 ntTSL 3 BASIC17.56■□□□□ 0.4
RXRBP28702 AL355353.1-201ENST00000604014 330 ntBASIC17.56■□□□□ 0.4
RXRBP28702 SERPING1-213ENST00000619430 634 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
RXRBP28702 GAS6-AS2-201ENST00000608651 1952 ntTSL 2 BASIC17.56■□□□□ 0.4
RXRBP28702 LINC00910-201ENST00000341011 2303 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
RXRBP28702 CCDC116-201ENST00000292779 2260 ntAPPRIS P2 TSL 1 (best) BASIC17.56■□□□□ 0.4
RXRBP28702 MYB-203ENST00000341911 3672 ntAPPRIS ALT1 TSL 1 (best) BASIC17.56■□□□□ 0.4
RXRBP28702 SLC25A45-202ENST00000398802 2286 ntAPPRIS P1 TSL 5 BASIC17.56■□□□□ 0.4
RXRBP28702 FAM131B-206ENST00000443739 4382 ntAPPRIS ALT1 TSL 1 (best) BASIC17.56■□□□□ 0.4
RXRBP28702 GTF2IRD1-203ENST00000455841 3315 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
RXRBP28702 AC025171.1-202ENST00000499871 2271 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
RXRBP28702 SUZ12-204ENST00000580398 3977 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
RXRBP28702 INPP5B-201ENST00000373021 3934 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
RXRBP28702 RB1CC1-202ENST00000435644 6614 ntAPPRIS ALT1 TSL 1 (best) BASIC17.56■□□□□ 0.4
RXRBP28702 MDFIC-201ENST00000257724 4598 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
RXRBP28702 FAM104A-202ENST00000405159 2865 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
RXRBP28702 DOC2GP-204ENST00000639052 2548 ntBASIC17.56■□□□□ 0.4
RXRBP28702 GCLM-201ENST00000370238 4857 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
RXRBP28702 LAMC1-201ENST00000258341 7889 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
RXRBP28702 AMZ1-201ENST00000312371 5516 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
RXRBP28702 CLUHP8-201ENST00000547527 1485 ntBASIC17.56■□□□□ 0.4
RXRBP28702 EPB42-203ENST00000540029 2098 ntTSL 2 BASIC17.56■□□□□ 0.4
RXRBP28702 PAX6-255ENST00000639386 1723 ntTSL 5 BASIC17.55■□□□□ 0.4
RXRBP28702 ARHGEF1-204ENST00000378152 2986 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
RXRBP28702 SHISA9-203ENST00000558583 6724 ntAPPRIS P4 TSL 5 BASIC17.55■□□□□ 0.4
RXRBP28702 DUSP8-201ENST00000331588 4455 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
RXRBP28702 ARL15-201ENST00000502271 3248 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
RXRBP28702 EIF4G1-204ENST00000352767 5484 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
RXRBP28702 ZCCHC3-201ENST00000500893 3354 ntAPPRIS P1 BASIC17.55■□□□□ 0.4
RXRBP28702 AL731569.1-201ENST00000428940 3058 ntTSL 2 BASIC17.55■□□□□ 0.4
RXRBP28702 AQP1-204ENST00000441328 2487 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
RXRBP28702 DAND5-201ENST00000317060 1877 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
RXRBP28702 PDE12-202ENST00000487257 3040 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
RXRBP28702 CCER1-201ENST00000358859 2962 ntAPPRIS P1 BASIC17.55■□□□□ 0.4
RXRBP28702 AC011890.1-201ENST00000427955 303 ntBASIC17.55■□□□□ 0.4
RXRBP28702 AC004870.4-202ENST00000433337 455 ntTSL 3 BASIC17.55■□□□□ 0.4
RXRBP28702 Z82198.1-201ENST00000447396 437 ntTSL 3 BASIC17.55■□□□□ 0.4
RXRBP28702 MIR2110-201ENST00000459421 75 ntBASIC17.55■□□□□ 0.4
RXRBP28702 AK2-208ENST00000487289 920 ntTSL 2 BASIC17.55■□□□□ 0.4
RXRBP28702 AC106774.3-201ENST00000505444 169 ntBASIC17.55■□□□□ 0.4
RXRBP28702 LINC01606-208ENST00000521653 557 ntTSL 4 BASIC17.55■□□□□ 0.4
RXRBP28702 AC073578.1-201ENST00000535133 493 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
RXRBP28702 RBP5-202ENST00000542370 564 ntTSL 2 BASIC17.55■□□□□ 0.4
RXRBP28702 AC013356.4-201ENST00000558421 482 ntTSL 2 BASIC17.55■□□□□ 0.4
RXRBP28702 MYL12A-206ENST00000578611 1004 ntAPPRIS P1 TSL 3 BASIC17.55■□□□□ 0.4
RXRBP28702 LINC02074-201ENST00000581028 569 ntTSL 4 BASIC17.55■□□□□ 0.4
RXRBP28702 LINC02074-202ENST00000584003 573 ntTSL 4 BASIC17.55■□□□□ 0.4
RXRBP28702 PRKN-210ENST00000612540 603 ntTSL 5 BASIC17.55■□□□□ 0.4
RXRBP28702 AC012186.3-201ENST00000623850 485 ntBASIC17.55■□□□□ 0.4
RXRBP28702 AC092471.1-202ENST00000637160 999 ntBASIC17.55■□□□□ 0.4
RXRBP28702 SUCO-204ENST00000608151 5790 ntTSL 5 BASIC17.55■□□□□ 0.4
RXRBP28702 AC092198.1-201ENST00000447651 2691 ntTSL 2 BASIC17.55■□□□□ 0.4
RXRBP28702 NR2E3-203ENST00000621098 2064 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
RXRBP28702 ACAT2-201ENST00000367048 3180 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
RXRBP28702 TCOF1-206ENST00000445265 4825 ntAPPRIS ALT2 TSL 5 BASIC17.55■□□□□ 0.4
RXRBP28702 ALDH7A1-234ENST00000637782 1773 ntAPPRIS ALT1 TSL 5 BASIC17.55■□□□□ 0.4
RXRBP28702 COBL-201ENST00000265136 5291 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
RXRBP28702 MFSD5-202ENST00000534842 2038 ntTSL 2 BASIC17.55■□□□□ 0.4
RXRBP28702 SLC8A2-201ENST00000236877 5234 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
RXRBP28702 ZNF557-201ENST00000252840 2268 ntAPPRIS P3 TSL 1 (best) BASIC17.55■□□□□ 0.4
RXRBP28702 AP1M2-201ENST00000250244 1749 ntAPPRIS P3 TSL 1 (best) BASIC17.55■□□□□ 0.4
RXRBP28702 RTN3-204ENST00000354497 1407 ntTSL 2 BASIC17.55■□□□□ 0.4
RXRBP28702 MAPT-205ENST00000351559 5811 ntAPPRIS ALT2 TSL 1 (best) BASIC17.55■□□□□ 0.4
RXRBP28702 SGCE-201ENST00000265735 1694 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
RXRBP28702 SEZ6-201ENST00000317338 4471 ntAPPRIS P4 TSL 1 (best) BASIC17.55■□□□□ 0.4
RXRBP28702 CLIC6-202ENST00000360731 3860 ntAPPRIS ALT2 TSL 1 (best) BASIC17.54■□□□□ 0.4
RXRBP28702 CBX3-202ENST00000396386 1857 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
RXRBP28702 SEMA5B-202ENST00000357599 4792 ntAPPRIS P3 TSL 1 (best) BASIC17.54■□□□□ 0.4
Retrieved 100 of 98,524 protein–RNA pairs in 78.6 ms