Protein–RNA interactions for Protein: Q9NWM3

CUEDC1, CUE domain-containing protein 1, humanhuman

Predicted RBP Predictions only

Length 386 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUEDC1Q9NWM3 PSMB8-AS1-204ENST00000429600 996 ntTSL 2 BASIC13.56□□□□□ -0.24
CUEDC1Q9NWM3 AL590617.2-201ENST00000432673 917 ntTSL 3 BASIC13.56□□□□□ -0.24
CUEDC1Q9NWM3 CCDC18-AS1-219ENST00000451302 1212 ntTSL 3 BASIC13.56□□□□□ -0.24
CUEDC1Q9NWM3 TIMP1-205ENST00000456754 1095 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
CUEDC1Q9NWM3 LINC02435-201ENST00000508291 584 ntTSL 3 BASIC13.56□□□□□ -0.24
CUEDC1Q9NWM3 UBXN1-214ENST00000533000 367 ntTSL 5 BASIC13.56□□□□□ -0.24
CUEDC1Q9NWM3 LTBR-209ENST00000541102 1084 ntTSL 5 BASIC13.56□□□□□ -0.24
CUEDC1Q9NWM3 LINC02440-201ENST00000545276 680 ntTSL 2 BASIC13.56□□□□□ -0.24
CUEDC1Q9NWM3 AC061992.1-201ENST00000592569 777 ntTSL 3 BASIC13.56□□□□□ -0.24
CUEDC1Q9NWM3 BCL2L12-204ENST00000594157 620 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
CUEDC1Q9NWM3 AC136475.1-202ENST00000602429 1151 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
CUEDC1Q9NWM3 AL133467.4-201ENST00000602953 725 ntBASIC13.56□□□□□ -0.24
CUEDC1Q9NWM3 AL031665.1-201ENST00000619766 572 ntTSL 4 BASIC13.56□□□□□ -0.24
CUEDC1Q9NWM3 GLIDR-205ENST00000640674 884 ntTSL 5 BASIC13.56□□□□□ -0.24
CUEDC1Q9NWM3 TEX264-201ENST00000341333 1340 ntAPPRIS P3 TSL 1 (best) BASIC13.56□□□□□ -0.24
CUEDC1Q9NWM3 AC011287.1-201ENST00000639998 1349 ntTSL 5 BASIC13.56□□□□□ -0.24
CUEDC1Q9NWM3 SREBF1-202ENST00000355815 4253 ntAPPRIS ALT2 TSL 1 (best) BASIC13.56□□□□□ -0.24
CUEDC1Q9NWM3 KCNIP1-210ENST00000636734 1613 ntTSL 5 BASIC13.56□□□□□ -0.24
CUEDC1Q9NWM3 CYP20A1-201ENST00000356079 1949 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
CUEDC1Q9NWM3 RPS6KA4-201ENST00000334205 3119 ntAPPRIS P3 TSL 1 (best) BASIC13.56□□□□□ -0.24
CUEDC1Q9NWM3 ATXN2L-204ENST00000382686 3739 ntAPPRIS ALT2 TSL 1 (best) BASIC13.56□□□□□ -0.24
CUEDC1Q9NWM3 RERG-201ENST00000256953 2264 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
CUEDC1Q9NWM3 IKZF1-218ENST00000615491 5637 ntTSL 5 BASIC13.56□□□□□ -0.24
CUEDC1Q9NWM3 RBPJ-206ENST00000361572 1697 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
CUEDC1Q9NWM3 GPNMB-203ENST00000409458 1673 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
CUEDC1Q9NWM3 USP19-208ENST00000453664 4719 ntAPPRIS ALT2 TSL 2 BASIC13.56□□□□□ -0.24
CUEDC1Q9NWM3 VTI1B-204ENST00000554659 5351 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
CUEDC1Q9NWM3 DDX27-201ENST00000371764 2643 ntAPPRIS P2 TSL 1 (best) BASIC13.56□□□□□ -0.24
CUEDC1Q9NWM3 RAPGEF3-205ENST00000449771 6061 ntAPPRIS ALT2 TSL 2 BASIC13.56□□□□□ -0.24
CUEDC1Q9NWM3 TMEM245-201ENST00000374586 7980 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
CUEDC1Q9NWM3 PLEKHD1-201ENST00000322564 4865 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
CUEDC1Q9NWM3 PIGC-201ENST00000344529 1447 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
CUEDC1Q9NWM3 CDK5RAP1-202ENST00000346416 2122 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
CUEDC1Q9NWM3 DDX39A-201ENST00000242776 1471 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
CUEDC1Q9NWM3 GALC-206ENST00000544807 2528 ntTSL 2 BASIC13.55□□□□□ -0.24
CUEDC1Q9NWM3 ELN-210ENST00000380584 3214 ntAPPRIS ALT2 TSL 1 (best) BASIC13.55□□□□□ -0.24
CUEDC1Q9NWM3 PLAG1-203ENST00000429357 1899 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
CUEDC1Q9NWM3 CAMKV-201ENST00000296471 2913 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
CUEDC1Q9NWM3 AC099521.3-201ENST00000624251 2938 ntBASIC13.55□□□□□ -0.24
CUEDC1Q9NWM3 RET-205ENST00000615310 4337 ntTSL 5 BASIC13.55□□□□□ -0.24
CUEDC1Q9NWM3 GPN2-202ENST00000374135 4678 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
CUEDC1Q9NWM3 SHROOM1-203ENST00000378679 4019 ntAPPRIS ALT2 TSL 1 (best) BASIC13.55□□□□□ -0.24
CUEDC1Q9NWM3 CFAP52-202ENST00000396219 1912 ntTSL 2 BASIC13.55□□□□□ -0.24
CUEDC1Q9NWM3 AC008620.2-201ENST00000510294 1569 ntBASIC13.55□□□□□ -0.24
CUEDC1Q9NWM3 ZNF135-205ENST00000511556 2253 ntAPPRIS P3 TSL 2 BASIC13.55□□□□□ -0.24
CUEDC1Q9NWM3 PAPD7-207ENST00000631941 1902 ntAPPRIS P1 TSL 5 BASIC13.55□□□□□ -0.24
CUEDC1Q9NWM3 LRSAM1-204ENST00000373324 3044 ntTSL 2 BASIC13.55□□□□□ -0.24
CUEDC1Q9NWM3 CRACR2A-203ENST00000440314 2697 ntAPPRIS P1 TSL 2 BASIC13.55□□□□□ -0.24
CUEDC1Q9NWM3 THEMIS2-201ENST00000328928 2337 ntTSL 2 BASIC13.55□□□□□ -0.24
CUEDC1Q9NWM3 LTB4R-203ENST00000396789 4110 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
CUEDC1Q9NWM3 H6PD-203ENST00000602477 5590 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
CUEDC1Q9NWM3 ZNF556-202ENST00000586426 1643 ntAPPRIS ALT2 TSL 1 (best) BASIC13.55□□□□□ -0.24
CUEDC1Q9NWM3 CAPZB-201ENST00000264202 858 ntAPPRIS P3 TSL 1 (best) BASIC13.55□□□□□ -0.24
CUEDC1Q9NWM3 MIR557-201ENST00000385239 98 ntBASIC13.55□□□□□ -0.24
CUEDC1Q9NWM3 AC234644.1-201ENST00000406065 370 ntBASIC13.55□□□□□ -0.24
CUEDC1Q9NWM3 AL589843.1-201ENST00000423924 425 ntTSL 2 BASIC13.55□□□□□ -0.24
CUEDC1Q9NWM3 CHID1-202ENST00000429789 1289 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
CUEDC1Q9NWM3 SPRY4-AS1-203ENST00000443800 566 ntTSL 3 BASIC13.55□□□□□ -0.24
CUEDC1Q9NWM3 DUTP3-201ENST00000450025 415 ntBASIC13.55□□□□□ -0.24
CUEDC1Q9NWM3 LINC01563-201ENST00000456235 750 ntTSL 2 BASIC13.55□□□□□ -0.24
CUEDC1Q9NWM3 AP000358.1-201ENST00000456260 156 ntBASIC13.55□□□□□ -0.24
CUEDC1Q9NWM3 EFCAB10-201ENST00000460135 717 ntTSL 2 BASIC13.55□□□□□ -0.24
CUEDC1Q9NWM3 SLC25A15P3-201ENST00000505530 290 ntBASIC13.55□□□□□ -0.24
CUEDC1Q9NWM3 IKBKB-212ENST00000519735 1166 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
CUEDC1Q9NWM3 MPZL3-203ENST00000525386 973 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
CUEDC1Q9NWM3 NACA-221ENST00000552540 1074 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
CUEDC1Q9NWM3 PPCDC-205ENST00000563393 1149 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
CUEDC1Q9NWM3 AC135983.4-201ENST00000564116 1262 ntBASIC13.55□□□□□ -0.24
CUEDC1Q9NWM3 PPCDC-208ENST00000567336 892 ntTSL 5 BASIC13.55□□□□□ -0.24
CUEDC1Q9NWM3 ELOF1-202ENST00000586120 658 ntAPPRIS P1 TSL 3 BASIC13.55□□□□□ -0.24
CUEDC1Q9NWM3 AC007326.1-201ENST00000604539 458 ntBASIC13.55□□□□□ -0.24
CUEDC1Q9NWM3 TOMM7-207ENST00000621567 241 ntAPPRIS ALT1 TSL 5 BASIC13.55□□□□□ -0.24
CUEDC1Q9NWM3 PCDH10-203ENST00000618019 4574 ntAPPRIS ALT2 BASIC13.55□□□□□ -0.24
CUEDC1Q9NWM3 RNF26-201ENST00000311413 2787 ntAPPRIS P1 BASIC13.55□□□□□ -0.24
CUEDC1Q9NWM3 ALDH3B1-201ENST00000342456 2786 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
CUEDC1Q9NWM3 PADI2-202ENST00000375486 4345 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
CUEDC1Q9NWM3 KIF6-201ENST00000229913 1330 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
CUEDC1Q9NWM3 JPH3-201ENST00000284262 3985 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
CUEDC1Q9NWM3 BMT2-201ENST00000297145 3981 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
CUEDC1Q9NWM3 HIGD1A-202ENST00000418900 1322 ntAPPRIS P1 TSL 2 BASIC13.55□□□□□ -0.24
CUEDC1Q9NWM3 PCBP1-AS1-214ENST00000419542 1309 ntTSL 5 BASIC13.55□□□□□ -0.24
CUEDC1Q9NWM3 AC010255.3-203ENST00000509403 1727 ntAPPRIS P1 TSL 2 BASIC13.55□□□□□ -0.24
CUEDC1Q9NWM3 RHD-203ENST00000357542 1387 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
CUEDC1Q9NWM3 FMNL3-205ENST00000550488 4120 ntAPPRIS ALT2 TSL 5 BASIC13.55□□□□□ -0.24
CUEDC1Q9NWM3 C11orf21-201ENST00000381153 2956 ntAPPRIS ALT2 TSL 1 (best) BASIC13.55□□□□□ -0.24
CUEDC1Q9NWM3 MROH2A-201ENST00000389758 5355 ntAPPRIS ALT2 TSL 5 BASIC13.55□□□□□ -0.24
CUEDC1Q9NWM3 HNRNPH1-204ENST00000442819 2248 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
CUEDC1Q9NWM3 GFPT2-201ENST00000253778 3093 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
CUEDC1Q9NWM3 PTPA-205ENST00000357197 2653 ntTSL 2 BASIC13.55□□□□□ -0.24
CUEDC1Q9NWM3 CDH16-204ENST00000565796 2694 ntTSL 2 BASIC13.55□□□□□ -0.24
CUEDC1Q9NWM3 STX3-207ENST00000633708 3111 ntTSL 5 BASIC13.55□□□□□ -0.24
CUEDC1Q9NWM3 ITGB4-202ENST00000449880 5689 ntAPPRIS P3 TSL 1 (best) BASIC13.55□□□□□ -0.24
CUEDC1Q9NWM3 LIPA-202ENST00000336233 2782 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
CUEDC1Q9NWM3 AC090826.2-201ENST00000568496 4946 ntTSL 2 BASIC13.54□□□□□ -0.24
CUEDC1Q9NWM3 TMEM87A-201ENST00000307216 1598 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
CUEDC1Q9NWM3 CFAP43-201ENST00000278064 2963 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
CUEDC1Q9NWM3 PNPLA5-205ENST00000597664 2537 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
CUEDC1Q9NWM3 NAA15-201ENST00000296543 6222 ntAPPRIS P2 TSL 1 (best) BASIC13.54□□□□□ -0.24
CUEDC1Q9NWM3 EMILIN1-201ENST00000380320 3943 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
CUEDC1Q9NWM3 ATG13-215ENST00000529655 2566 ntAPPRIS P1 TSL 2 BASIC13.54□□□□□ -0.24
Retrieved 100 of 98,524 protein–RNA pairs in 40 ms