Protein–RNA interactions for Protein: Q9BUN5

CCDC28B, Coiled-coil domain-containing protein 28B, humanhuman

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28BQ9BUN5 RDH12-203ENST00000551171 1879 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
CCDC28BQ9BUN5 ARFIP2-210ENST00000614314 3846 ntTSL 2 BASIC13.61□□□□□ -0.23
CCDC28BQ9BUN5 CCDC117-201ENST00000249064 3985 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
CCDC28BQ9BUN5 AHCYP4-201ENST00000419201 1315 ntBASIC13.61□□□□□ -0.23
CCDC28BQ9BUN5 ZDHHC11-209ENST00000511539 1303 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
CCDC28BQ9BUN5 SAP30BP-225ENST00000584667 2722 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
CCDC28BQ9BUN5 DHX30-215ENST00000619982 3574 ntAPPRIS ALT1 TSL 5 BASIC13.61□□□□□ -0.23
CCDC28BQ9BUN5 LDLRAD4-AS1-201ENST00000588672 2190 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
CCDC28BQ9BUN5 ZFAND3-203ENST00000373391 3001 ntTSL 5 BASIC13.61□□□□□ -0.23
CCDC28BQ9BUN5 DLGAP3-202ENST00000373347 3856 ntAPPRIS P1 TSL 5 BASIC13.61□□□□□ -0.23
CCDC28BQ9BUN5 ELMOD3-206ENST00000409890 2492 ntAPPRIS P1 TSL 5 BASIC13.61□□□□□ -0.23
CCDC28BQ9BUN5 AC008040.5-201ENST00000599781 1781 ntBASIC13.6□□□□□ -0.23
CCDC28BQ9BUN5 ALDH3A2-201ENST00000176643 3928 ntAPPRIS P3 TSL 1 (best) BASIC13.6□□□□□ -0.23
CCDC28BQ9BUN5 TMEM2-202ENST00000377044 6523 ntAPPRIS P3 TSL 1 (best) BASIC13.6□□□□□ -0.23
CCDC28BQ9BUN5 SMYD4-201ENST00000305513 4384 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
CCDC28BQ9BUN5 B4GALT4-201ENST00000359213 2385 ntAPPRIS P1 TSL 2 BASIC13.6□□□□□ -0.23
CCDC28BQ9BUN5 KIAA1217-209ENST00000430453 5962 ntAPPRIS ALT2 TSL 5 BASIC13.6□□□□□ -0.23
CCDC28BQ9BUN5 KIAA1217-211ENST00000458595 5977 ntAPPRIS ALT2 TSL 1 (best) BASIC13.6□□□□□ -0.23
CCDC28BQ9BUN5 AP001999.1-201ENST00000513405 3684 ntTSL 2 BASIC13.6□□□□□ -0.23
CCDC28BQ9BUN5 CLDND1-215ENST00000507874 1380 ntTSL 3 BASIC13.6□□□□□ -0.23
CCDC28BQ9BUN5 WDSUB1-201ENST00000358147 1535 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
CCDC28BQ9BUN5 AL162231.1-201ENST00000421828 1525 ntAPPRIS P2 TSL 1 (best) BASIC13.6□□□□□ -0.23
CCDC28BQ9BUN5 TMEM26-202ENST00000399298 5151 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
CCDC28BQ9BUN5 SNRNP27-201ENST00000244227 1802 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
CCDC28BQ9BUN5 NRDC-202ENST00000354831 3895 ntAPPRIS P3 TSL 1 (best) BASIC13.6□□□□□ -0.23
CCDC28BQ9BUN5 HIPK1-205ENST00000369558 8157 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
CCDC28BQ9BUN5 KIF9-208ENST00000452770 2707 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
CCDC28BQ9BUN5 PLEKHG6-201ENST00000011684 2881 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
CCDC28BQ9BUN5 PPARGC1B-202ENST00000360453 3004 ntAPPRIS ALT2 TSL 1 (best) BASIC13.6□□□□□ -0.23
CCDC28BQ9BUN5 CARHSP1-202ENST00000396593 3026 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
CCDC28BQ9BUN5 BTRC-202ENST00000370187 6134 ntAPPRIS P4 TSL 1 (best) BASIC13.6□□□□□ -0.23
CCDC28BQ9BUN5 CYFIP2-219ENST00000616178 4210 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
CCDC28BQ9BUN5 CD74-202ENST00000353334 1449 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
CCDC28BQ9BUN5 JTB-202ENST00000356648 1040 ntTSL 2 BASIC13.6□□□□□ -0.23
CCDC28BQ9BUN5 TNFAIP8L2-201ENST00000368910 1178 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
CCDC28BQ9BUN5 KLC4-203ENST00000394056 2770 ntAPPRIS ALT2 TSL 2 BASIC13.6□□□□□ -0.23
CCDC28BQ9BUN5 SZT2-AS1-201ENST00000396885 699 ntTSL 3 BASIC13.6□□□□□ -0.23
CCDC28BQ9BUN5 KRTAP10-1-201ENST00000400375 1215 ntAPPRIS P1 BASIC13.6□□□□□ -0.23
CCDC28BQ9BUN5 TUBB2BP1-201ENST00000404155 871 ntBASIC13.6□□□□□ -0.23
CCDC28BQ9BUN5 MAGEC1-202ENST00000406005 1084 ntAPPRIS ALT2 TSL 1 (best) BASIC13.6□□□□□ -0.23
CCDC28BQ9BUN5 AL583835.2-202ENST00000421363 1104 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
CCDC28BQ9BUN5 AL121983.1-201ENST00000424181 335 ntTSL 2 BASIC13.6□□□□□ -0.23
CCDC28BQ9BUN5 FAM58BP-201ENST00000439056 645 ntBASIC13.6□□□□□ -0.23
CCDC28BQ9BUN5 KLF2P1-201ENST00000447438 1042 ntBASIC13.6□□□□□ -0.23
CCDC28BQ9BUN5 AL606760.2-202ENST00000452466 524 ntTSL 5 BASIC13.6□□□□□ -0.23
CCDC28BQ9BUN5 ZNF302-203ENST00000457781 2600 ntAPPRIS P3 TSL 1 (best) BASIC13.6□□□□□ -0.23
CCDC28BQ9BUN5 CCDC159-201ENST00000458408 1062 ntAPPRIS P1 TSL 5 BASIC13.6□□□□□ -0.23
CCDC28BQ9BUN5 CENPM-208ENST00000472374 541 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
CCDC28BQ9BUN5 RPL8-205ENST00000527914 551 ntTSL 3 BASIC13.6□□□□□ -0.23
CCDC28BQ9BUN5 AL356740.1-201ENST00000602192 1297 ntBASIC13.6□□□□□ -0.23
CCDC28BQ9BUN5 ARL16-215ENST00000622299 1053 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
CCDC28BQ9BUN5 STK38L-201ENST00000389032 5068 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
CCDC28BQ9BUN5 YTHDF3-209ENST00000617200 5076 ntTSL 5 BASIC13.6□□□□□ -0.23
CCDC28BQ9BUN5 SCAF4-201ENST00000286835 4193 ntAPPRIS P3 TSL 1 (best) BASIC13.6□□□□□ -0.23
CCDC28BQ9BUN5 EIF4G1-219ENST00000435046 4668 ntTSL 5 BASIC13.6□□□□□ -0.23
CCDC28BQ9BUN5 TMEM131L-202ENST00000409663 5017 ntAPPRIS P3 TSL 5 BASIC13.6□□□□□ -0.23
CCDC28BQ9BUN5 CASS4-202ENST00000434344 2888 ntTSL 2 BASIC13.6□□□□□ -0.23
CCDC28BQ9BUN5 CLCNKB-202ENST00000375679 2567 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
CCDC28BQ9BUN5 AC026992.2-203ENST00000563004 2419 ntBASIC13.6□□□□□ -0.23
CCDC28BQ9BUN5 SAMD4A-202ENST00000392067 6833 ntAPPRIS P1 TSL 2 BASIC13.6□□□□□ -0.23
CCDC28BQ9BUN5 ARHGEF1-203ENST00000354532 3243 ntAPPRIS ALT2 TSL 1 (best) BASIC13.6□□□□□ -0.23
CCDC28BQ9BUN5 CPNE1-201ENST00000317677 1961 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
CCDC28BQ9BUN5 AL355336.1-201ENST00000451355 1676 ntTSL 2 BASIC13.59□□□□□ -0.23
CCDC28BQ9BUN5 C16orf62-215ENST00000542263 3138 ntTSL 2 BASIC13.59□□□□□ -0.23
CCDC28BQ9BUN5 MSRA-201ENST00000317173 1536 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
CCDC28BQ9BUN5 TAPBP-234ENST00000434618 3759 ntAPPRIS ALT2 TSL 1 (best) BASIC13.59□□□□□ -0.23
CCDC28BQ9BUN5 PTK2-202ENST00000395218 4415 ntTSL 5 BASIC13.59□□□□□ -0.23
CCDC28BQ9BUN5 ZMIZ2-206ENST00000441627 5089 ntAPPRIS P4 TSL 1 (best) BASIC13.59□□□□□ -0.23
CCDC28BQ9BUN5 DNMT1-203ENST00000540357 4916 ntTSL 5 BASIC13.59□□□□□ -0.23
CCDC28BQ9BUN5 TMOD1-202ENST00000375175 2516 ntTSL 2 BASIC13.59□□□□□ -0.23
CCDC28BQ9BUN5 PRAMEF25-201ENST00000614839 1863 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
CCDC28BQ9BUN5 PRAMEF26-201ENST00000624207 1863 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
CCDC28BQ9BUN5 CEP112-202ENST00000392769 3517 ntAPPRIS P4 TSL 5 BASIC13.59□□□□□ -0.23
CCDC28BQ9BUN5 SYT12-201ENST00000393946 4534 ntAPPRIS P1 TSL 2 BASIC13.59□□□□□ -0.23
CCDC28BQ9BUN5 SMARCA2-204ENST00000357248 5855 ntAPPRIS P1 TSL 5 BASIC13.59□□□□□ -0.23
CCDC28BQ9BUN5 AC009093.1-201ENST00000566070 2099 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
CCDC28BQ9BUN5 SCNN1B-202ENST00000343070 2597 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
CCDC28BQ9BUN5 ELOVL6-201ENST00000302274 3090 ntAPPRIS P1 TSL 2 BASIC13.59□□□□□ -0.23
CCDC28BQ9BUN5 SRGAP3-201ENST00000360413 8415 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
CCDC28BQ9BUN5 VWCE-205ENST00000535710 1437 ntTSL 2 BASIC13.59□□□□□ -0.23
CCDC28BQ9BUN5 LINC01815-202ENST00000641468 1409 ntBASIC13.59□□□□□ -0.23
CCDC28BQ9BUN5 ALDH1L1-205ENST00000452905 2758 ntTSL 2 BASIC13.59□□□□□ -0.23
CCDC28BQ9BUN5 PAAF1-201ENST00000310571 4994 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
CCDC28BQ9BUN5 ATF6B-209ENST00000375201 2624 ntAPPRIS ALT2 TSL 1 (best) BASIC13.59□□□□□ -0.23
CCDC28BQ9BUN5 ATF6B-210ENST00000375203 2620 ntAPPRIS P3 TSL 1 (best) BASIC13.59□□□□□ -0.23
CCDC28BQ9BUN5 BATF-201ENST00000286639 980 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
CCDC28BQ9BUN5 NUDT2-203ENST00000379158 1075 ntAPPRIS P1 TSL 3 BASIC13.59□□□□□ -0.23
CCDC28BQ9BUN5 CD300A-204ENST00000392625 1163 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
CCDC28BQ9BUN5 MB-205ENST00000406324 582 ntAPPRIS P1 TSL 2 BASIC13.59□□□□□ -0.23
CCDC28BQ9BUN5 MIR1202-201ENST00000408529 83 ntBASIC13.59□□□□□ -0.23
CCDC28BQ9BUN5 KRT18P36-201ENST00000411618 1276 ntBASIC13.59□□□□□ -0.23
CCDC28BQ9BUN5 ITPR1-AS1-201ENST00000412804 858 ntTSL 2 BASIC13.59□□□□□ -0.23
CCDC28BQ9BUN5 SAP30L-202ENST00000426761 777 ntTSL 3 BASIC13.59□□□□□ -0.23
CCDC28BQ9BUN5 AL513211.1-201ENST00000429053 483 ntTSL 3 BASIC13.59□□□□□ -0.23
CCDC28BQ9BUN5 LINC00441-201ENST00000433480 1143 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
CCDC28BQ9BUN5 POM121L10P-201ENST00000436994 1285 ntBASIC13.59□□□□□ -0.23
CCDC28BQ9BUN5 AC012441.2-201ENST00000444843 739 ntBASIC13.59□□□□□ -0.23
CCDC28BQ9BUN5 BCRP2-202ENST00000447763 634 ntBASIC13.59□□□□□ -0.23
CCDC28BQ9BUN5 STAG3L5P-205ENST00000473757 1255 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
CCDC28BQ9BUN5 ZNF148-206ENST00000485866 2960 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
Retrieved 100 of 98,524 protein–RNA pairs in 46.7 ms