Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 PRSS30P-201ENST00000390681 2881 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
CCDC88AQ3V6T2 POLR1C-203ENST00000372389 1355 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
CCDC88AQ3V6T2 SLC7A8-214ENST00000621729 1371 ntTSL 5 BASIC16.57■□□□□ 0.24
CCDC88AQ3V6T2 TMUB2-211ENST00000589184 1837 ntTSL 5 BASIC16.57■□□□□ 0.24
CCDC88AQ3V6T2 CCDC138-203ENST00000412964 2250 ntAPPRIS ALT2 TSL 1 (best) BASIC16.57■□□□□ 0.24
CCDC88AQ3V6T2 CATSPER4-202ENST00000456354 1912 ntAPPRIS P2 TSL 1 (best) BASIC16.57■□□□□ 0.24
CCDC88AQ3V6T2 FLYWCH1-203ENST00000416288 4963 ntAPPRIS P3 TSL 1 (best) BASIC16.57■□□□□ 0.24
CCDC88AQ3V6T2 SYP-201ENST00000263233 2498 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
CCDC88AQ3V6T2 LPGAT1-201ENST00000366996 2035 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
CCDC88AQ3V6T2 SH3BP4-202ENST00000392011 5194 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
CCDC88AQ3V6T2 ADCK1-201ENST00000238561 2234 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
CCDC88AQ3V6T2 CDC73-201ENST00000367435 4969 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
CCDC88AQ3V6T2 RAB22A-201ENST00000244040 8670 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
CCDC88AQ3V6T2 GGT1-203ENST00000400382 2628 ntAPPRIS P1 TSL 2 BASIC16.57■□□□□ 0.24
CCDC88AQ3V6T2 AL009178.2-201ENST00000597278 2719 ntBASIC16.57■□□□□ 0.24
CCDC88AQ3V6T2 POM121C-208ENST00000615331 5835 ntAPPRIS P2 TSL 1 (best) BASIC16.57■□□□□ 0.24
CCDC88AQ3V6T2 USP28-214ENST00000545540 3431 ntTSL 2 BASIC16.57■□□□□ 0.24
CCDC88AQ3V6T2 EDF1-201ENST00000224073 640 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
CCDC88AQ3V6T2 IQCF4-203ENST00000428561 420 ntBASIC16.56■□□□□ 0.24
CCDC88AQ3V6T2 AC074019.1-201ENST00000428788 1096 ntBASIC16.56■□□□□ 0.24
CCDC88AQ3V6T2 AL662797.1-201ENST00000442852 799 ntTSL 3 BASIC16.56■□□□□ 0.24
CCDC88AQ3V6T2 RPSAP16-201ENST00000447583 821 ntBASIC16.56■□□□□ 0.24
CCDC88AQ3V6T2 GYG1-209ENST00000483267 801 ntTSL 2 BASIC16.56■□□□□ 0.24
CCDC88AQ3V6T2 TRPM1-210ENST00000559179 1002 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
CCDC88AQ3V6T2 MT1X-202ENST00000562939 538 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
CCDC88AQ3V6T2 RBMX-209ENST00000565438 1292 ntTSL 5 BASIC16.56■□□□□ 0.24
CCDC88AQ3V6T2 AC026461.1-201ENST00000567563 551 ntTSL 4 BASIC16.56■□□□□ 0.24
CCDC88AQ3V6T2 POU5F1-207ENST00000606567 1236 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
CCDC88AQ3V6T2 CEBPZOS-203ENST00000397226 1499 ntAPPRIS P1 TSL 5 BASIC16.56■□□□□ 0.24
CCDC88AQ3V6T2 ATP6V0A4-202ENST00000353492 2709 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
CCDC88AQ3V6T2 SLC25A3-202ENST00000228318 1678 ntAPPRIS P4 TSL 5 BASIC16.56■□□□□ 0.24
CCDC88AQ3V6T2 BCL10-201ENST00000370580 2819 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
CCDC88AQ3V6T2 A1CF-202ENST00000373993 1997 ntAPPRIS P4 TSL 1 (best) BASIC16.56■□□□□ 0.24
CCDC88AQ3V6T2 AC011474.4-201ENST00000623523 2076 ntBASIC16.56■□□□□ 0.24
CCDC88AQ3V6T2 HIST2H2BE-201ENST00000369155 2194 ntAPPRIS P1 BASIC16.56■□□□□ 0.24
CCDC88AQ3V6T2 DNASE1L1-206ENST00000393638 2665 ntAPPRIS P1 TSL 5 BASIC16.56■□□□□ 0.24
CCDC88AQ3V6T2 NFE2L2-201ENST00000397062 2853 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
CCDC88AQ3V6T2 RAP2C-201ENST00000342983 3896 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
CCDC88AQ3V6T2 AC026271.1-201ENST00000447794 1348 ntBASIC16.56■□□□□ 0.24
CCDC88AQ3V6T2 RCL1-206ENST00000442869 1644 ntTSL 3 BASIC16.56■□□□□ 0.24
CCDC88AQ3V6T2 FLAD1-206ENST00000368432 1839 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
CCDC88AQ3V6T2 VRK3-201ENST00000316763 1938 ntAPPRIS P3 TSL 1 (best) BASIC16.56■□□□□ 0.24
CCDC88AQ3V6T2 GGT1-201ENST00000248923 2326 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
CCDC88AQ3V6T2 DDX41-208ENST00000507955 2607 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
CCDC88AQ3V6T2 PPP1R13L-202ENST00000418234 3118 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
CCDC88AQ3V6T2 MEGF6-201ENST00000294599 4501 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
CCDC88AQ3V6T2 IMPDH1-201ENST00000338791 2881 ntTSL 2 BASIC16.56■□□□□ 0.24
CCDC88AQ3V6T2 SEZ6L-202ENST00000343706 2898 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
CCDC88AQ3V6T2 IMPDH1-217ENST00000626419 2862 ntAPPRIS ALT1 TSL 5 BASIC16.56■□□□□ 0.24
CCDC88AQ3V6T2 RAD51D-203ENST00000394589 2287 ntAPPRIS P1 TSL 5 BASIC16.56■□□□□ 0.24
CCDC88AQ3V6T2 GLP2R-204ENST00000574745 1882 ntTSL 2 BASIC16.56■□□□□ 0.24
CCDC88AQ3V6T2 PCP2-201ENST00000311069 776 ntAPPRIS P3 TSL 1 (best) BASIC16.56■□□□□ 0.24
CCDC88AQ3V6T2 NUDT2-203ENST00000379158 1075 ntAPPRIS P1 TSL 3 BASIC16.56■□□□□ 0.24
CCDC88AQ3V6T2 APOBEC3B-204ENST00000407298 1282 ntAPPRIS ALT2 TSL 1 (best) BASIC16.56■□□□□ 0.24
CCDC88AQ3V6T2 CYCS-203ENST00000409764 799 ntAPPRIS P1 TSL 3 BASIC16.56■□□□□ 0.24
CCDC88AQ3V6T2 RBPMSLP-201ENST00000433427 502 ntBASIC16.56■□□□□ 0.24
CCDC88AQ3V6T2 PTPA-219ENST00000435305 530 ntTSL 2 BASIC16.56■□□□□ 0.24
CCDC88AQ3V6T2 ZBTB46-AS1-201ENST00000435912 533 ntTSL 3 BASIC16.56■□□□□ 0.24
CCDC88AQ3V6T2 LAMTOR4-202ENST00000441173 730 ntTSL 2 BASIC16.56■□□□□ 0.24
CCDC88AQ3V6T2 TCEA3-204ENST00000461794 713 ntTSL 3 BASIC16.56■□□□□ 0.24
CCDC88AQ3V6T2 TMCO1-203ENST00000464650 1100 ntTSL 2 BASIC16.56■□□□□ 0.24
CCDC88AQ3V6T2 ABCD1P3-201ENST00000562927 605 ntBASIC16.56■□□□□ 0.24
CCDC88AQ3V6T2 PDZRN3-AS1-203ENST00000608743 780 ntTSL 5 BASIC16.56■□□□□ 0.24
CCDC88AQ3V6T2 AC092535.4-201ENST00000609548 397 ntBASIC16.56■□□□□ 0.24
CCDC88AQ3V6T2 AC010503.4-201ENST00000615487 688 ntBASIC16.56■□□□□ 0.24
CCDC88AQ3V6T2 FXYD4-204ENST00000616495 778 ntAPPRIS P1 TSL 5 BASIC16.56■□□□□ 0.24
CCDC88AQ3V6T2 AC137723.2-201ENST00000623540 398 ntBASIC16.56■□□□□ 0.24
CCDC88AQ3V6T2 DGAT1-206ENST00000528718 3711 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
CCDC88AQ3V6T2 AP3M2-202ENST00000396926 3545 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
CCDC88AQ3V6T2 ELN-208ENST00000380575 3043 ntAPPRIS ALT2 TSL 1 (best) BASIC16.56■□□□□ 0.24
CCDC88AQ3V6T2 OR2V1-204ENST00000641551 2423 ntAPPRIS P1 BASIC16.56■□□□□ 0.24
CCDC88AQ3V6T2 RNF150-201ENST00000306799 4535 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
CCDC88AQ3V6T2 LYNX1-206ENST00000621401 4537 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
CCDC88AQ3V6T2 NUCB1-201ENST00000405315 2668 ntAPPRIS P2 TSL 1 (best) BASIC16.56■□□□□ 0.24
CCDC88AQ3V6T2 RUNX1-207ENST00000437180 5967 ntAPPRIS P3 TSL 5 BASIC16.56■□□□□ 0.24
CCDC88AQ3V6T2 PSD-201ENST00000020673 4183 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
CCDC88AQ3V6T2 GJD2-201ENST00000290374 2889 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
CCDC88AQ3V6T2 KRT8P25-201ENST00000473150 1456 ntBASIC16.55■□□□□ 0.24
CCDC88AQ3V6T2 SLC4A3-201ENST00000273063 4246 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
CCDC88AQ3V6T2 AC245140.2-201ENST00000624054 1939 ntBASIC16.55■□□□□ 0.24
CCDC88AQ3V6T2 SUOX-201ENST00000266971 2364 ntAPPRIS P1 TSL 2 BASIC16.55■□□□□ 0.24
CCDC88AQ3V6T2 TATDN3-202ENST00000366974 2389 ntAPPRIS P3 TSL 1 (best) BASIC16.55■□□□□ 0.24
CCDC88AQ3V6T2 SUOX-208ENST00000548274 2352 ntAPPRIS P1 TSL 5 BASIC16.55■□□□□ 0.24
CCDC88AQ3V6T2 ZCCHC7-201ENST00000322831 1219 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
CCDC88AQ3V6T2 MIR193A-201ENST00000384882 88 ntBASIC16.55■□□□□ 0.24
CCDC88AQ3V6T2 IL18BP-206ENST00000393707 1037 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
CCDC88AQ3V6T2 AL133351.2-201ENST00000437718 484 ntTSL 2 BASIC16.55■□□□□ 0.24
CCDC88AQ3V6T2 RN7SL87P-201ENST00000497657 288 ntBASIC16.55■□□□□ 0.24
CCDC88AQ3V6T2 EFNA5-204ENST00000509503 637 ntTSL 5 BASIC16.55■□□□□ 0.24
CCDC88AQ3V6T2 TOB1-AS1-202ENST00000514358 690 ntTSL 5 BASIC16.55■□□□□ 0.24
CCDC88AQ3V6T2 AC105424.1-201ENST00000514583 209 ntBASIC16.55■□□□□ 0.24
CCDC88AQ3V6T2 ANAPC15-209ENST00000538919 849 ntAPPRIS P3 TSL 3 BASIC16.55■□□□□ 0.24
CCDC88AQ3V6T2 AC078878.2-201ENST00000543451 286 ntTSL 5 BASIC16.55■□□□□ 0.24
CCDC88AQ3V6T2 AC078923.1-201ENST00000552856 748 ntTSL 3 BASIC16.55■□□□□ 0.24
CCDC88AQ3V6T2 BCL2L2-PABPN1-201ENST00000553781 1241 ntAPPRIS P1 TSL 2 BASIC16.55■□□□□ 0.24
CCDC88AQ3V6T2 LINC02352-201ENST00000557928 468 ntTSL 5 BASIC16.55■□□□□ 0.24
CCDC88AQ3V6T2 AC015912.3-201ENST00000619432 348 ntBASIC16.55■□□□□ 0.24
CCDC88AQ3V6T2 PAX8-AS1-219ENST00000623306 840 ntTSL 5 BASIC16.55■□□□□ 0.24
CCDC88AQ3V6T2 CDIPT-AS1-203ENST00000638164 713 ntBASIC16.55■□□□□ 0.24
CCDC88AQ3V6T2 WDR20-203ENST00000335263 2616 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
Retrieved 100 of 98,524 protein–RNA pairs in 40.3 ms