Protein–RNA interactions for Protein: Q9Y5G4

PCDHGA9, Protocadherin gamma-A9, humanhuman

Known RBP Predictions only

Length 932 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA9Q9Y5G4 PHF10-202ENST00000366780 1589 ntAPPRIS ALT2 TSL 5 BASIC20.9■□□□□ 0.94
PCDHGA9Q9Y5G4 C1QTNF1-207ENST00000580454 1396 ntAPPRIS P1 TSL 5 BASIC20.9■□□□□ 0.94
PCDHGA9Q9Y5G4 AC034268.1-201ENST00000441047 882 ntBASIC20.9■□□□□ 0.94
PCDHGA9Q9Y5G4 IRF3-227ENST00000600911 1637 ntTSL 5 BASIC20.89■□□□□ 0.94
PCDHGA9Q9Y5G4 SAMD13-205ENST00000370673 1567 ntTSL 2 BASIC20.89■□□□□ 0.94
PCDHGA9Q9Y5G4 NABP2-202ENST00000341463 1411 ntAPPRIS P1 TSL 3 BASIC20.89■□□□□ 0.94
PCDHGA9Q9Y5G4 FXYD3-201ENST00000344013 1404 ntTSL 5 BASIC20.89■□□□□ 0.94
PCDHGA9Q9Y5G4 BMP6-201ENST00000283147 2780 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
PCDHGA9Q9Y5G4 BHLHA9-201ENST00000391429 902 ntAPPRIS P1 BASIC20.89■□□□□ 0.93
PCDHGA9Q9Y5G4 GATA3-AS1-204ENST00000438755 675 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
PCDHGA9Q9Y5G4 LINC01574-201ENST00000512115 560 ntTSL 2 BASIC20.89■□□□□ 0.93
PCDHGA9Q9Y5G4 AL138963.3-201ENST00000610057 588 ntTSL 4 BASIC20.89■□□□□ 0.93
PCDHGA9Q9Y5G4 CTBP1-203ENST00000382952 2467 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
PCDHGA9Q9Y5G4 POLR2H-208ENST00000456318 1802 ntAPPRIS P1 TSL 5 BASIC20.89■□□□□ 0.93
PCDHGA9Q9Y5G4 SOX10-201ENST00000360880 2861 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
PCDHGA9Q9Y5G4 LSR-205ENST00000427250 1606 ntTSL 2 BASIC20.89■□□□□ 0.93
PCDHGA9Q9Y5G4 SNUPN-207ENST00000567134 1641 ntAPPRIS P1 TSL 5 BASIC20.89■□□□□ 0.93
PCDHGA9Q9Y5G4 PLPP1-202ENST00000307259 1597 ntAPPRIS ALT1 TSL 1 (best) BASIC20.89■□□□□ 0.93
PCDHGA9Q9Y5G4 CD37-213ENST00000598095 1598 ntTSL 2 BASIC20.89■□□□□ 0.93
PCDHGA9Q9Y5G4 ZNF205-202ENST00000382192 2062 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
PCDHGA9Q9Y5G4 GDNF-203ENST00000381826 778 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
PCDHGA9Q9Y5G4 GDNF-204ENST00000427982 856 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
PCDHGA9Q9Y5G4 LINC01942-201ENST00000521373 513 ntTSL 4 BASIC20.88■□□□□ 0.93
PCDHGA9Q9Y5G4 C1QTNF5-203ENST00000530681 1046 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
PCDHGA9Q9Y5G4 FRMD8-208ENST00000531296 366 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
PCDHGA9Q9Y5G4 PTGDR-202ENST00000553372 1216 ntTSL 3 BASIC20.88■□□□□ 0.93
PCDHGA9Q9Y5G4 PYCARD-AS1-201ENST00000561916 1095 ntTSL 2 BASIC20.88■□□□□ 0.93
PCDHGA9Q9Y5G4 AC010999.2-201ENST00000621974 596 ntTSL 2 BASIC20.88■□□□□ 0.93
PCDHGA9Q9Y5G4 BRD3-202ENST00000371834 2529 ntAPPRIS ALT2 TSL 1 (best) BASIC20.88■□□□□ 0.93
PCDHGA9Q9Y5G4 WRNIP1-205ENST00000618555 2651 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
PCDHGA9Q9Y5G4 MADCAM1-205ENST00000613880 1509 ntAPPRIS ALT2 TSL 5 BASIC20.88■□□□□ 0.93
PCDHGA9Q9Y5G4 HDGFL2-210ENST00000621835 2255 ntAPPRIS ALT2 TSL 1 (best) BASIC20.88■□□□□ 0.93
PCDHGA9Q9Y5G4 CCNG2-201ENST00000316355 5526 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
PCDHGA9Q9Y5G4 TMEM256-PLSCR3-204ENST00000573331 2557 ntAPPRIS P5 TSL 2 BASIC20.88■□□□□ 0.93
PCDHGA9Q9Y5G4 FUS-210ENST00000568685 1785 ntAPPRIS ALT2 TSL 5 BASIC20.87■□□□□ 0.93
PCDHGA9Q9Y5G4 DLG3-203ENST00000374360 5905 ntAPPRIS P2 TSL 1 (best) BASIC20.87■□□□□ 0.93
PCDHGA9Q9Y5G4 SNRNP70-201ENST00000221448 1603 ntTSL 2 BASIC20.87■□□□□ 0.93
PCDHGA9Q9Y5G4 RPL8-201ENST00000262584 1041 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
PCDHGA9Q9Y5G4 C20orf144-201ENST00000375222 571 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
PCDHGA9Q9Y5G4 HES3-201ENST00000377898 697 ntAPPRIS P1 TSL 2 BASIC20.87■□□□□ 0.93
PCDHGA9Q9Y5G4 FAM66C-205ENST00000456135 1216 ntTSL 5 BASIC20.87■□□□□ 0.93
PCDHGA9Q9Y5G4 AC010336.5-201ENST00000594308 317 ntTSL 3 BASIC20.87■□□□□ 0.93
PCDHGA9Q9Y5G4 NKILA-201ENST00000613231 537 ntTSL 4 BASIC20.87■□□□□ 0.93
PCDHGA9Q9Y5G4 UBXN2A-202ENST00000404924 1557 ntAPPRIS P1 TSL 2 BASIC20.87■□□□□ 0.93
PCDHGA9Q9Y5G4 ABHD16B-201ENST00000369916 1491 ntAPPRIS P1 BASIC20.87■□□□□ 0.93
PCDHGA9Q9Y5G4 TMEM98-202ENST00000394642 1683 ntAPPRIS P1 TSL 2 BASIC20.86■□□□□ 0.93
PCDHGA9Q9Y5G4 MATK-202ENST00000395040 1907 ntAPPRIS ALT2 TSL 1 (best) BASIC20.86■□□□□ 0.93
PCDHGA9Q9Y5G4 TIMM50-201ENST00000314349 1612 ntAPPRIS P2 TSL 1 (best) BASIC20.86■□□□□ 0.93
PCDHGA9Q9Y5G4 TSPAN2-201ENST00000369515 793 ntTSL 3 BASIC20.86■□□□□ 0.93
PCDHGA9Q9Y5G4 CCDC28B-201ENST00000373602 1089 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
PCDHGA9Q9Y5G4 PRELID2-204ENST00000505416 738 ntAPPRIS P2 TSL 3 BASIC20.86■□□□□ 0.93
PCDHGA9Q9Y5G4 CBWD1-203ENST00000377400 1792 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
PCDHGA9Q9Y5G4 ST3GAL5-268ENST00000640982 2465 ntAPPRIS ALT2 TSL 5 BASIC20.86■□□□□ 0.93
PCDHGA9Q9Y5G4 LSM8-203ENST00000422760 1920 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
PCDHGA9Q9Y5G4 AC012676.1-201ENST00000574705 1949 ntBASIC20.86■□□□□ 0.93
PCDHGA9Q9Y5G4 LMTK3-201ENST00000270238 4972 ntAPPRIS P2 TSL 1 (best) BASIC20.86■□□□□ 0.93
PCDHGA9Q9Y5G4 BMP2K-204ENST00000502871 3195 ntAPPRIS P3 TSL 1 (best) BASIC20.85■□□□□ 0.93
PCDHGA9Q9Y5G4 YBX1P1-201ENST00000445822 960 ntBASIC20.85■□□□□ 0.93
PCDHGA9Q9Y5G4 AC126544.1-201ENST00000580842 1059 ntBASIC20.85■□□□□ 0.93
PCDHGA9Q9Y5G4 KCNMA1-224ENST00000618048 1269 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
PCDHGA9Q9Y5G4 ST3GAL5-231ENST00000639119 2131 ntTSL 5 BASIC20.85■□□□□ 0.93
PCDHGA9Q9Y5G4 ECEL1-202ENST00000409941 2322 ntAPPRIS ALT1 TSL 1 (best) BASIC20.85■□□□□ 0.93
PCDHGA9Q9Y5G4 SMOX-203ENST00000339123 2074 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
PCDHGA9Q9Y5G4 FEZ2-203ENST00000379245 2097 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
PCDHGA9Q9Y5G4 OSCAR-207ENST00000391761 1826 ntAPPRIS ALT2 TSL 1 (best) BASIC20.85■□□□□ 0.93
PCDHGA9Q9Y5G4 EPS8L1-205ENST00000586329 2130 ntTSL 5 BASIC20.84■□□□□ 0.93
PCDHGA9Q9Y5G4 LRRC24-202ENST00000533758 1701 ntAPPRIS ALT2 TSL 5 BASIC20.84■□□□□ 0.93
PCDHGA9Q9Y5G4 TTLL11-202ENST00000373776 2012 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
PCDHGA9Q9Y5G4 GJC1-209ENST00000592524 1837 ntAPPRIS P1 TSL 2 BASIC20.84■□□□□ 0.93
PCDHGA9Q9Y5G4 IGHV3-20-201ENST00000390606 415 ntAPPRIS P1 BASIC20.84■□□□□ 0.93
PCDHGA9Q9Y5G4 ASB1-202ENST00000409297 878 ntTSL 5 BASIC20.84■□□□□ 0.93
PCDHGA9Q9Y5G4 AICDA-202ENST00000537228 667 ntTSL 5 BASIC20.84■□□□□ 0.93
PCDHGA9Q9Y5G4 SLC39A3-203ENST00000545664 1219 ntTSL 2 BASIC20.84■□□□□ 0.93
PCDHGA9Q9Y5G4 pRNA.6-201ENST00000610482 90 ntBASIC20.84■□□□□ 0.93
PCDHGA9Q9Y5G4 pRNA.5-201ENST00000612139 90 ntBASIC20.84■□□□□ 0.93
PCDHGA9Q9Y5G4 pRNA.11-201ENST00000618423 90 ntBASIC20.84■□□□□ 0.93
PCDHGA9Q9Y5G4 pRNA.13-201ENST00000619112 90 ntBASIC20.84■□□□□ 0.93
PCDHGA9Q9Y5G4 CDYL-203ENST00000397588 2184 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
PCDHGA9Q9Y5G4 KLC1-205ENST00000380038 2322 ntTSL 2 BASIC20.84■□□□□ 0.93
PCDHGA9Q9Y5G4 STX18-205ENST00000505286 1380 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
PCDHGA9Q9Y5G4 VPS53-211ENST00000571805 2356 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
PCDHGA9Q9Y5G4 GFOD1-204ENST00000603223 2388 ntTSL 2 BASIC20.83■□□□□ 0.93
PCDHGA9Q9Y5G4 LHPP-201ENST00000368839 1522 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
PCDHGA9Q9Y5G4 NRL-202ENST00000396997 1517 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
PCDHGA9Q9Y5G4 MED25-211ENST00000617849 1548 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
PCDHGA9Q9Y5G4 FAM181A-204ENST00000557000 1652 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
PCDHGA9Q9Y5G4 R3HDM4-201ENST00000361574 1815 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
PCDHGA9Q9Y5G4 CT47B1-201ENST00000371311 1328 ntAPPRIS P1 TSL 5 BASIC20.83■□□□□ 0.93
PCDHGA9Q9Y5G4 SNX10-207ENST00000446848 2613 ntAPPRIS P2 TSL 1 (best) BASIC20.83■□□□□ 0.93
PCDHGA9Q9Y5G4 FAM124A-201ENST00000280057 2104 ntTSL 2 BASIC20.83■□□□□ 0.93
PCDHGA9Q9Y5G4 SLC35C1-202ENST00000442528 1756 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
PCDHGA9Q9Y5G4 RTCA-202ENST00000370126 538 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
PCDHGA9Q9Y5G4 NEBL-AS1-202ENST00000439097 661 ntTSL 2 BASIC20.83■□□□□ 0.93
PCDHGA9Q9Y5G4 TMEM70-203ENST00000517439 617 ntTSL 2 BASIC20.83■□□□□ 0.93
PCDHGA9Q9Y5G4 PTRH1-205ENST00000423807 1570 ntTSL 2 BASIC20.83■□□□□ 0.92
PCDHGA9Q9Y5G4 KRT10-201ENST00000269576 2124 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
PCDHGA9Q9Y5G4 PANK2-201ENST00000316562 2280 ntAPPRIS P2 TSL 1 (best) BASIC20.83■□□□□ 0.92
PCDHGA9Q9Y5G4 AGTR1-203ENST00000404754 2252 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
PCDHGA9Q9Y5G4 TSEN54-201ENST00000333213 1944 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
PCDHGA9Q9Y5G4 PLEKHA8-202ENST00000396257 1907 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
Retrieved 100 of 98,524 protein–RNA pairs in 67.5 ms