Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 ZC3H14-223ENST00000557607 1983 ntTSL 5 BASIC22.17■■□□□ 1.14
TRIM39Q9HCM9 AC144652.1-201ENST00000609974 1624 ntBASIC22.17■■□□□ 1.14
TRIM39Q9HCM9 DISC1-220ENST00000602873 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC22.16■■□□□ 1.14
TRIM39Q9HCM9 SYT6-210ENST00000641643 1587 ntBASIC22.16■■□□□ 1.14
TRIM39Q9HCM9 SNX18-201ENST00000326277 2063 ntTSL 2 BASIC22.16■■□□□ 1.14
TRIM39Q9HCM9 SEPT4-205ENST00000426861 1906 ntTSL 1 (best) BASIC22.16■■□□□ 1.14
TRIM39Q9HCM9 CARD19-201ENST00000375464 855 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
TRIM39Q9HCM9 ACYP2-202ENST00000394666 993 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
TRIM39Q9HCM9 WDR86-AS1-204ENST00000489632 751 ntTSL 3 BASIC22.16■■□□□ 1.14
TRIM39Q9HCM9 AC110285.6-201ENST00000617652 491 ntBASIC22.16■■□□□ 1.14
TRIM39Q9HCM9 SF1-220ENST00000626028 704 ntTSL 2 BASIC22.16■■□□□ 1.14
TRIM39Q9HCM9 YAP1-202ENST00000345877 5284 ntTSL 5 BASIC22.16■■□□□ 1.14
TRIM39Q9HCM9 NECTIN2-202ENST00000252485 2112 ntAPPRIS P3 TSL 1 (best) BASIC22.16■■□□□ 1.14
TRIM39Q9HCM9 LEFTY1-201ENST00000272134 1626 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
TRIM39Q9HCM9 DXO-201ENST00000337523 1628 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
TRIM39Q9HCM9 DLK2-201ENST00000357338 2038 ntAPPRIS P3 TSL 2 BASIC22.16■■□□□ 1.14
TRIM39Q9HCM9 CCDC85B-201ENST00000312579 1524 ntAPPRIS P1 BASIC22.16■■□□□ 1.14
TRIM39Q9HCM9 MADCAM1-205ENST00000613880 1509 ntAPPRIS ALT2 TSL 5 BASIC22.16■■□□□ 1.14
TRIM39Q9HCM9 FLOT1-201ENST00000376389 1912 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
TRIM39Q9HCM9 IQCJ-SCHIP1-202ENST00000460298 1884 ntAPPRIS ALT2 TSL 1 (best) BASIC22.15■■□□□ 1.14
TRIM39Q9HCM9 BIN1-203ENST00000346226 2401 ntAPPRIS ALT2 TSL 1 (best) BASIC22.15■■□□□ 1.14
TRIM39Q9HCM9 TYROBP-203ENST00000544690 522 ntTSL 1 (best) BASIC22.15■■□□□ 1.14
TRIM39Q9HCM9 AC009086.3-201ENST00000623486 1008 ntBASIC22.15■■□□□ 1.14
TRIM39Q9HCM9 TMEM102-201ENST00000323206 1973 ntAPPRIS P1 TSL 1 (best) BASIC22.15■■□□□ 1.14
TRIM39Q9HCM9 TMEM102-202ENST00000396568 1962 ntAPPRIS P1 TSL 2 BASIC22.15■■□□□ 1.14
TRIM39Q9HCM9 FZD9-201ENST00000344575 2338 ntAPPRIS P1 BASIC22.15■■□□□ 1.14
TRIM39Q9HCM9 C7orf26-202ENST00000359073 1762 ntTSL 1 (best) BASIC22.15■■□□□ 1.14
TRIM39Q9HCM9 NKX2-3-201ENST00000344586 2097 ntAPPRIS P1 TSL 2 BASIC22.15■■□□□ 1.14
TRIM39Q9HCM9 RABGGTA-202ENST00000399409 2265 ntAPPRIS P1 TSL 1 (best) BASIC22.14■■□□□ 1.14
TRIM39Q9HCM9 PTH1R-201ENST00000313049 2123 ntAPPRIS P1 TSL 1 (best) BASIC22.14■■□□□ 1.13
TRIM39Q9HCM9 LYPD2-201ENST00000359228 594 ntAPPRIS P1 TSL 1 (best) BASIC22.14■■□□□ 1.13
TRIM39Q9HCM9 ZNF32-202ENST00000395797 1201 ntAPPRIS P1 TSL 2 BASIC22.14■■□□□ 1.13
TRIM39Q9HCM9 ARFIP2-205ENST00000525235 852 ntTSL 2 BASIC22.14■■□□□ 1.13
TRIM39Q9HCM9 RALB-208ENST00000631312 311 ntTSL 5 BASIC22.14■■□□□ 1.13
TRIM39Q9HCM9 ADARB2-202ENST00000381310 1810 ntTSL 1 (best) BASIC22.14■■□□□ 1.13
TRIM39Q9HCM9 ID4-201ENST00000378700 2344 ntAPPRIS P1 TSL 1 (best) BASIC22.14■■□□□ 1.13
TRIM39Q9HCM9 IRX4-202ENST00000505790 2538 ntAPPRIS P1 TSL 1 (best) BASIC22.14■■□□□ 1.13
TRIM39Q9HCM9 PTPRM-201ENST00000332175 6095 ntAPPRIS P3 TSL 1 (best) BASIC22.14■■□□□ 1.13
TRIM39Q9HCM9 AC012645.1-201ENST00000515455 1650 ntTSL 1 (best) BASIC22.14■■□□□ 1.13
TRIM39Q9HCM9 LYRM1-201ENST00000219168 1626 ntAPPRIS P1 TSL 2 BASIC22.13■■□□□ 1.13
TRIM39Q9HCM9 NHLRC4-201ENST00000424439 2097 ntAPPRIS P1 TSL 3 BASIC22.13■■□□□ 1.13
TRIM39Q9HCM9 SYT7-203ENST00000539008 2061 ntTSL 5 BASIC22.13■■□□□ 1.13
TRIM39Q9HCM9 SPPL2B-211ENST00000614794 1559 ntTSL 1 (best) BASIC22.13■■□□□ 1.13
TRIM39Q9HCM9 PYCARD-202ENST00000350605 696 ntTSL 1 (best) BASIC22.13■■□□□ 1.13
TRIM39Q9HCM9 PPP1R14A-204ENST00000591291 433 ntTSL 5 BASIC22.13■■□□□ 1.13
TRIM39Q9HCM9 AC091982.4-201ENST00000623943 726 ntTSL 2 BASIC22.13■■□□□ 1.13
TRIM39Q9HCM9 HOXD4-201ENST00000306324 1464 ntAPPRIS P1 TSL 1 (best) BASIC22.13■■□□□ 1.13
TRIM39Q9HCM9 IDH2-202ENST00000540499 1453 ntTSL 2 BASIC22.13■■□□□ 1.13
TRIM39Q9HCM9 FXYD3-201ENST00000344013 1404 ntTSL 5 BASIC22.13■■□□□ 1.13
TRIM39Q9HCM9 P4HA3-201ENST00000331597 2274 ntAPPRIS P1 TSL 1 (best) BASIC22.13■■□□□ 1.13
TRIM39Q9HCM9 FOXA2-201ENST00000377115 2401 ntAPPRIS P3 TSL 1 (best) BASIC22.12■■□□□ 1.13
TRIM39Q9HCM9 SPON2-222ENST00000617421 2156 ntAPPRIS P1 TSL 5 BASIC22.12■■□□□ 1.13
TRIM39Q9HCM9 LINC01529-204ENST00000636474 1715 ntBASIC22.12■■□□□ 1.13
TRIM39Q9HCM9 LRRC73-201ENST00000372441 2121 ntAPPRIS P1 TSL 1 (best) BASIC22.12■■□□□ 1.13
TRIM39Q9HCM9 GRK4-202ENST00000398051 2068 ntTSL 1 (best) BASIC22.12■■□□□ 1.13
TRIM39Q9HCM9 AC006455.2-201ENST00000429931 906 ntBASIC22.12■■□□□ 1.13
TRIM39Q9HCM9 SMIM29-205ENST00000468145 903 ntTSL 2 BASIC22.12■■□□□ 1.13
TRIM39Q9HCM9 SMIM29-207ENST00000481533 1053 ntAPPRIS P1 TSL 1 (best) BASIC22.12■■□□□ 1.13
TRIM39Q9HCM9 POLR2F-211ENST00000488684 564 ntTSL 2 BASIC22.12■■□□□ 1.13
TRIM39Q9HCM9 NRL-205ENST00000560550 788 ntTSL 1 (best) BASIC22.12■■□□□ 1.13
TRIM39Q9HCM9 DUX4L4-201ENST00000566884 1269 ntBASIC22.12■■□□□ 1.13
TRIM39Q9HCM9 AL136162.1-201ENST00000607711 1078 ntBASIC22.12■■□□□ 1.13
TRIM39Q9HCM9 AC079630.1-202ENST00000618127 1840 ntBASIC22.12■■□□□ 1.13
TRIM39Q9HCM9 HMGA2-206ENST00000536545 1788 ntTSL 1 (best) BASIC22.12■■□□□ 1.13
TRIM39Q9HCM9 MMP21-201ENST00000368808 1919 ntAPPRIS P1 TSL 1 (best) BASIC22.12■■□□□ 1.13
TRIM39Q9HCM9 MCUB-201ENST00000394650 2278 ntAPPRIS P1 TSL 1 (best) BASIC22.11■■□□□ 1.13
TRIM39Q9HCM9 RAD21L1-202ENST00000402452 1707 ntTSL 5 BASIC22.11■■□□□ 1.13
TRIM39Q9HCM9 LSR-201ENST00000347609 1880 ntAPPRIS ALT2 TSL 1 (best) BASIC22.11■■□□□ 1.13
TRIM39Q9HCM9 RAB11FIP1-203ENST00000522727 1866 ntTSL 1 (best) BASIC22.11■■□□□ 1.13
TRIM39Q9HCM9 LSR-213ENST00000605618 1885 ntAPPRIS ALT2 TSL 1 (best) BASIC22.11■■□□□ 1.13
TRIM39Q9HCM9 DTNB-206ENST00000404103 2384 ntAPPRIS ALT2 TSL 5 BASIC22.11■■□□□ 1.13
TRIM39Q9HCM9 COMT-206ENST00000407537 1457 ntAPPRIS P3 TSL 5 BASIC22.11■■□□□ 1.13
TRIM39Q9HCM9 ST3GAL4-213ENST00000530591 1459 ntAPPRIS P3 TSL 1 (best) BASIC22.11■■□□□ 1.13
TRIM39Q9HCM9 ZFP91-CNTF-201ENST00000389919 2319 ntAPPRIS P5 TSL 2 BASIC22.11■■□□□ 1.13
TRIM39Q9HCM9 C19orf60-201ENST00000358607 839 ntAPPRIS P3 TSL 1 (best) BASIC22.11■■□□□ 1.13
TRIM39Q9HCM9 SERBP1P1-201ENST00000396021 1160 ntBASIC22.11■■□□□ 1.13
TRIM39Q9HCM9 C19orf60-202ENST00000450195 702 ntAPPRIS ALT2 TSL 1 (best) BASIC22.11■■□□□ 1.13
TRIM39Q9HCM9 PBX2P1-201ENST00000493219 1291 ntBASIC22.11■■□□□ 1.13
TRIM39Q9HCM9 CALM1-203ENST00000544280 1064 ntTSL 1 (best) BASIC22.11■■□□□ 1.13
TRIM39Q9HCM9 TGFBR3L-202ENST00000565886 1260 ntAPPRIS P1 TSL 5 BASIC22.11■■□□□ 1.13
TRIM39Q9HCM9 AL138724.1-201ENST00000606771 1088 ntBASIC22.11■■□□□ 1.13
TRIM39Q9HCM9 NR2F6-201ENST00000291442 2404 ntAPPRIS P1 TSL 1 (best) BASIC22.11■■□□□ 1.13
TRIM39Q9HCM9 AL591684.2-201ENST00000605970 1594 ntTSL 5 BASIC22.11■■□□□ 1.13
TRIM39Q9HCM9 P3H3-201ENST00000290510 2632 ntAPPRIS P1 TSL 1 (best) BASIC22.1■■□□□ 1.13
TRIM39Q9HCM9 ATAD3B-201ENST00000308647 2448 ntAPPRIS P1 TSL 1 (best) BASIC22.1■■□□□ 1.13
TRIM39Q9HCM9 MYCBPAP-202ENST00000419930 1640 ntAPPRIS ALT2 TSL 1 (best) BASIC22.1■■□□□ 1.13
TRIM39Q9HCM9 CACNA1H-202ENST00000358590 8069 ntAPPRIS ALT2 TSL 5 BASIC22.1■■□□□ 1.13
TRIM39Q9HCM9 TCP1-202ENST00000392168 1878 ntTSL 5 BASIC22.1■■□□□ 1.13
TRIM39Q9HCM9 PTCHD3P2-201ENST00000424937 1205 ntBASIC22.1■■□□□ 1.13
TRIM39Q9HCM9 OIP5-AS1-208ENST00000560706 473 ntTSL 5 BASIC22.1■■□□□ 1.13
TRIM39Q9HCM9 ZNF264-206ENST00000600531 774 ntTSL 2 BASIC22.1■■□□□ 1.13
TRIM39Q9HCM9 AC106739.1-201ENST00000617035 715 ntBASIC22.1■■□□□ 1.13
TRIM39Q9HCM9 AC092902.2-206ENST00000625484 846 ntTSL 5 BASIC22.1■■□□□ 1.13
TRIM39Q9HCM9 TMEM64-203ENST00000458549 4997 ntAPPRIS P1 TSL 1 (best) BASIC22.1■■□□□ 1.13
TRIM39Q9HCM9 RNPEP-202ENST00000367286 2282 ntTSL 5 BASIC22.1■■□□□ 1.13
TRIM39Q9HCM9 ZNF837-202ENST00000597582 1969 ntAPPRIS P1 TSL 2 BASIC22.1■■□□□ 1.13
TRIM39Q9HCM9 PDIA2-201ENST00000219406 1698 ntAPPRIS P2 TSL 1 (best) BASIC22.1■■□□□ 1.13
TRIM39Q9HCM9 H19-210ENST00000439725 1929 ntTSL 2 BASIC22.1■■□□□ 1.13
TRIM39Q9HCM9 MYH7B-209ENST00000618182 6197 ntAPPRIS ALT2 TSL 5 BASIC22.1■■□□□ 1.13
TRIM39Q9HCM9 MAGI2-217ENST00000629359 6704 ntTSL 5 BASIC22.09■■□□□ 1.13
Retrieved 100 of 98,524 protein–RNA pairs in 14.7 ms