Protein–RNA interactions for Protein: Q96MR9

ZNF560, Zinc finger protein 560, humanhuman

Predictions only

Length 790 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF560Q96MR9 AFDN-201ENST00000344191 5249 ntTSL 5 BASIC24.01■■□□□ 1.43
ZNF560Q96MR9 PRADC1-201ENST00000258083 1083 ntAPPRIS P1 TSL 1 (best) BASIC24.01■■□□□ 1.43
ZNF560Q96MR9 AC009097.2-201ENST00000562763 465 ntTSL 2 BASIC24.01■■□□□ 1.43
ZNF560Q96MR9 MIR4767-201ENST00000582827 78 ntBASIC24.01■■□□□ 1.43
ZNF560Q96MR9 SIMC1-204ENST00000430704 1925 ntAPPRIS P3 TSL 2 BASIC24.01■■□□□ 1.43
ZNF560Q96MR9 NIPSNAP2-201ENST00000322090 1999 ntAPPRIS P1 TSL 1 (best) BASIC24.01■■□□□ 1.43
ZNF560Q96MR9 SYF2-201ENST00000236273 1345 ntAPPRIS P1 TSL 1 (best) BASIC24.01■■□□□ 1.43
ZNF560Q96MR9 QKI-207ENST00000453779 5685 ntTSL 1 (best) BASIC24.01■■□□□ 1.43
ZNF560Q96MR9 DCAF15-201ENST00000254337 2278 ntAPPRIS P1 TSL 1 (best) BASIC24■■□□□ 1.43
ZNF560Q96MR9 CTSF-201ENST00000310325 2035 ntAPPRIS P1 TSL 1 (best) BASIC24■■□□□ 1.43
ZNF560Q96MR9 AK8-201ENST00000298545 2072 ntAPPRIS P1 TSL 1 (best) BASIC24■■□□□ 1.43
ZNF560Q96MR9 C5orf58-204ENST00000521850 2113 ntAPPRIS ALT2 TSL 1 (best) BASIC24■■□□□ 1.43
ZNF560Q96MR9 AC010336.5-201ENST00000594308 317 ntTSL 3 BASIC24■■□□□ 1.43
ZNF560Q96MR9 AC005837.3-201ENST00000612163 286 ntBASIC24■■□□□ 1.43
ZNF560Q96MR9 NR2F1-AS1-210ENST00000606739 1431 ntTSL 2 BASIC24■■□□□ 1.43
ZNF560Q96MR9 SEPT4-205ENST00000426861 1906 ntTSL 1 (best) BASIC24■■□□□ 1.43
ZNF560Q96MR9 TBL1X-201ENST00000217964 5871 ntTSL 1 (best) BASIC23.99■■□□□ 1.43
ZNF560Q96MR9 SLC25A5-AS1-202ENST00000445759 1616 ntTSL 1 (best) BASIC23.99■■□□□ 1.43
ZNF560Q96MR9 PLEKHA8-201ENST00000258679 2293 ntTSL 1 (best) BASIC23.99■■□□□ 1.43
ZNF560Q96MR9 SKOR2-203ENST00000620245 3048 ntAPPRIS ALT2 TSL 5 BASIC23.99■■□□□ 1.43
ZNF560Q96MR9 RALB-203ENST00000420510 1252 ntAPPRIS P1 TSL 2 BASIC23.99■■□□□ 1.43
ZNF560Q96MR9 AC004707.1-201ENST00000511627 715 ntTSL 3 BASIC23.99■■□□□ 1.43
ZNF560Q96MR9 FLOT1-201ENST00000376389 1912 ntAPPRIS P1 TSL 1 (best) BASIC23.99■■□□□ 1.43
ZNF560Q96MR9 CSNK1E-203ENST00000396832 2791 ntAPPRIS P1 TSL 1 (best) BASIC23.99■■□□□ 1.43
ZNF560Q96MR9 LYRM1-201ENST00000219168 1626 ntAPPRIS P1 TSL 2 BASIC23.99■■□□□ 1.43
ZNF560Q96MR9 ACAD8-202ENST00000374752 1797 ntTSL 2 BASIC23.98■■□□□ 1.43
ZNF560Q96MR9 CAMK2N1-201ENST00000375078 2336 ntAPPRIS P1 TSL 1 (best) BASIC23.98■■□□□ 1.43
ZNF560Q96MR9 AP006621.1-201ENST00000532946 536 ntTSL 5 BASIC23.98■■□□□ 1.43
ZNF560Q96MR9 AL355001.2-201ENST00000620617 1191 ntBASIC23.98■■□□□ 1.43
ZNF560Q96MR9 BTBD7-201ENST00000298896 2621 ntTSL 1 (best) BASIC23.98■■□□□ 1.43
ZNF560Q96MR9 TIMM50-201ENST00000314349 1612 ntAPPRIS P2 TSL 1 (best) BASIC23.98■■□□□ 1.43
ZNF560Q96MR9 PDIA2-201ENST00000219406 1698 ntAPPRIS P2 TSL 1 (best) BASIC23.98■■□□□ 1.43
ZNF560Q96MR9 NAE1-204ENST00000394074 1654 ntTSL 5 BASIC23.98■■□□□ 1.43
ZNF560Q96MR9 TCP1-202ENST00000392168 1878 ntTSL 5 BASIC23.98■■□□□ 1.43
ZNF560Q96MR9 KCNMA1-283ENST00000640523 5425 ntAPPRIS ALT2 TSL 5 BASIC23.97■■□□□ 1.43
ZNF560Q96MR9 ATMIN-201ENST00000299575 4884 ntAPPRIS P1 TSL 1 (best) BASIC23.97■■□□□ 1.43
ZNF560Q96MR9 LKAAEAR1-201ENST00000302096 761 ntAPPRIS ALT2 TSL 2 BASIC23.97■■□□□ 1.43
ZNF560Q96MR9 LKAAEAR1-202ENST00000308906 868 ntAPPRIS P2 TSL 1 (best) BASIC23.97■■□□□ 1.43
ZNF560Q96MR9 PKIB-204ENST00000368448 1561 ntAPPRIS P1 TSL 5 BASIC23.97■■□□□ 1.43
ZNF560Q96MR9 HAUS7-202ENST00000370211 1363 ntAPPRIS P2 TSL 1 (best) BASIC23.97■■□□□ 1.43
ZNF560Q96MR9 LRRC73-201ENST00000372441 2121 ntAPPRIS P1 TSL 1 (best) BASIC23.97■■□□□ 1.43
ZNF560Q96MR9 STOX1-202ENST00000399162 935 ntTSL 1 (best) BASIC23.97■■□□□ 1.43
ZNF560Q96MR9 STOX1-203ENST00000399165 1135 ntTSL 1 (best) BASIC23.97■■□□□ 1.43
ZNF560Q96MR9 FAM174B-207ENST00000555748 866 ntAPPRIS ALT2 TSL 3 BASIC23.97■■□□□ 1.43
ZNF560Q96MR9 SNAI3-AS1-201ENST00000563261 998 ntTSL 1 (best) BASIC23.97■■□□□ 1.43
ZNF560Q96MR9 SH3RF3-AS1-201ENST00000567491 1604 ntBASIC23.97■■□□□ 1.43
ZNF560Q96MR9 TMEM256-PLSCR3-204ENST00000573331 2557 ntAPPRIS P5 TSL 2 BASIC23.97■■□□□ 1.43
ZNF560Q96MR9 AL499627.2-201ENST00000606283 725 ntBASIC23.97■■□□□ 1.43
ZNF560Q96MR9 SRRM2-231ENST00000630499 1207 ntTSL 1 (best) BASIC23.97■■□□□ 1.43
ZNF560Q96MR9 AC093323.1-202ENST00000635031 2045 ntBASIC23.97■■□□□ 1.43
ZNF560Q96MR9 BAG1-212ENST00000641048 1038 ntAPPRIS P3 BASIC23.97■■□□□ 1.43
ZNF560Q96MR9 BSPRY-201ENST00000374183 2339 ntAPPRIS P1 TSL 1 (best) BASIC23.96■■□□□ 1.43
ZNF560Q96MR9 ADARB2-202ENST00000381310 1810 ntTSL 1 (best) BASIC23.96■■□□□ 1.43
ZNF560Q96MR9 HMGA2-206ENST00000536545 1788 ntTSL 1 (best) BASIC23.96■■□□□ 1.43
ZNF560Q96MR9 C1QTNF4-201ENST00000302514 1664 ntAPPRIS P1 TSL 1 (best) BASIC23.96■■□□□ 1.43
ZNF560Q96MR9 THOC6-202ENST00000326266 1419 ntAPPRIS P1 TSL 1 (best) BASIC23.96■■□□□ 1.43
ZNF560Q96MR9 PRSS22-201ENST00000161006 1386 ntAPPRIS P1 TSL 1 (best) BASIC23.96■■□□□ 1.43
ZNF560Q96MR9 LIN7B-202ENST00000391864 582 ntTSL 3 BASIC23.96■■□□□ 1.43
ZNF560Q96MR9 FAM66C-205ENST00000456135 1216 ntTSL 5 BASIC23.96■■□□□ 1.43
ZNF560Q96MR9 FEZ1-205ENST00000524435 750 ntTSL 2 BASIC23.96■■□□□ 1.43
ZNF560Q96MR9 NRIP3-203ENST00000531090 980 ntTSL 2 BASIC23.96■■□□□ 1.43
ZNF560Q96MR9 MLF2-206ENST00000539187 1110 ntAPPRIS P1 TSL 1 (best) BASIC23.96■■□□□ 1.43
ZNF560Q96MR9 AC096887.1-203ENST00000607203 768 ntAPPRIS ALT2 TSL 5 BASIC23.96■■□□□ 1.43
ZNF560Q96MR9 GRAMD4P4-201ENST00000613563 1115 ntBASIC23.96■■□□□ 1.43
ZNF560Q96MR9 NEDD4L-237ENST00000617539 728 ntTSL 2 BASIC23.96■■□□□ 1.43
ZNF560Q96MR9 USF3-203ENST00000491165 2133 ntAPPRIS ALT2 TSL 1 (best) BASIC23.96■■□□□ 1.43
ZNF560Q96MR9 MMP21-201ENST00000368808 1919 ntAPPRIS P1 TSL 1 (best) BASIC23.96■■□□□ 1.43
ZNF560Q96MR9 AKT1S1-204ENST00000391832 1911 ntAPPRIS P1 TSL 1 (best) BASIC23.96■■□□□ 1.43
ZNF560Q96MR9 P2RX4-211ENST00000543171 1777 ntTSL 5 BASIC23.96■■□□□ 1.43
ZNF560Q96MR9 RAD21L1-202ENST00000402452 1707 ntTSL 5 BASIC23.96■■□□□ 1.43
ZNF560Q96MR9 SYNGR3-202ENST00000562045 1743 ntTSL 2 BASIC23.96■■□□□ 1.43
ZNF560Q96MR9 HAGHL-212ENST00000564537 1667 ntTSL 2 BASIC23.95■■□□□ 1.43
ZNF560Q96MR9 LLGL2-202ENST00000375227 1374 ntTSL 1 (best) BASIC23.95■■□□□ 1.42
ZNF560Q96MR9 POU2F3-206ENST00000543440 1953 ntAPPRIS P1 TSL 1 (best) BASIC23.95■■□□□ 1.42
ZNF560Q96MR9 ZDHHC16-205ENST00000370846 1280 ntTSL 3 BASIC23.95■■□□□ 1.42
ZNF560Q96MR9 HYI-204ENST00000372432 1066 ntTSL 1 (best) BASIC23.95■■□□□ 1.42
ZNF560Q96MR9 AC142381.2-201ENST00000566120 298 ntBASIC23.95■■□□□ 1.42
ZNF560Q96MR9 AL031432.3-201ENST00000607698 485 ntBASIC23.95■■□□□ 1.42
ZNF560Q96MR9 SNX18-201ENST00000326277 2063 ntTSL 2 BASIC23.95■■□□□ 1.42
ZNF560Q96MR9 TMEM102-201ENST00000323206 1973 ntAPPRIS P1 TSL 1 (best) BASIC23.94■■□□□ 1.42
ZNF560Q96MR9 TMEM102-202ENST00000396568 1962 ntAPPRIS P1 TSL 2 BASIC23.94■■□□□ 1.42
ZNF560Q96MR9 H19-210ENST00000439725 1929 ntTSL 2 BASIC23.94■■□□□ 1.42
ZNF560Q96MR9 SPON2-222ENST00000617421 2156 ntAPPRIS P1 TSL 5 BASIC23.94■■□□□ 1.42
ZNF560Q96MR9 CAMTA1-208ENST00000473578 567 ntTSL 1 (best) BASIC23.94■■□□□ 1.42
ZNF560Q96MR9 SERGEF-219ENST00000532265 1124 ntTSL 2 BASIC23.94■■□□□ 1.42
ZNF560Q96MR9 C15orf61-202ENST00000557807 769 ntTSL 2 BASIC23.94■■□□□ 1.42
ZNF560Q96MR9 SAP25-203ENST00000614631 987 ntAPPRIS P2 TSL 2 BASIC23.94■■□□□ 1.42
ZNF560Q96MR9 CBWD3-212ENST00000616550 721 ntTSL 2 BASIC23.94■■□□□ 1.42
ZNF560Q96MR9 CBWD6-216ENST00000617933 721 ntTSL 3 BASIC23.94■■□□□ 1.42
ZNF560Q96MR9 FAM53B-201ENST00000280780 1568 ntTSL 1 (best) BASIC23.94■■□□□ 1.42
ZNF560Q96MR9 FZD9-201ENST00000344575 2338 ntAPPRIS P1 BASIC23.93■■□□□ 1.42
ZNF560Q96MR9 AP001330.3-201ENST00000520123 633 ntBASIC23.93■■□□□ 1.42
ZNF560Q96MR9 AC093249.6-202ENST00000568500 1142 ntTSL 2 BASIC23.93■■□□□ 1.42
ZNF560Q96MR9 PPP1R14A-205ENST00000591585 949 ntTSL 2 BASIC23.93■■□□□ 1.42
ZNF560Q96MR9 DYRK1B-201ENST00000323039 2535 ntAPPRIS P3 TSL 1 (best) BASIC23.93■■□□□ 1.42
ZNF560Q96MR9 NIPSNAP2-205ENST00000446778 1882 ntTSL 2 BASIC23.93■■□□□ 1.42
ZNF560Q96MR9 AC133637.1-201ENST00000624115 1537 ntBASIC23.93■■□□□ 1.42
ZNF560Q96MR9 CDX1-201ENST00000231656 1758 ntAPPRIS P1 TSL 1 (best) BASIC23.93■■□□□ 1.42
ZNF560Q96MR9 ABHD16B-201ENST00000369916 1491 ntAPPRIS P1 BASIC23.93■■□□□ 1.42
ZNF560Q96MR9 NUDT18-201ENST00000611621 1497 ntAPPRIS P1 TSL 1 (best) BASIC23.93■■□□□ 1.42
Retrieved 100 of 98,524 protein–RNA pairs in 16.5 ms