Protein–RNA interactions for Protein: Q86TS7

LINC00643, Putative UPF0730 protein encoded by LINC00643, humanhuman

Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643Q86TS7 CBWD3-201ENST00000360171 2165 ntAPPRIS P2 TSL 1 (best) BASIC14.09□□□□□ -0.15
LINC00643Q86TS7 DNAAF3-201ENST00000391720 2169 ntAPPRIS P3 TSL 2 BASIC14.09□□□□□ -0.15
LINC00643Q86TS7 FADS6-203ENST00000612771 2154 ntAPPRIS P2 TSL 1 (best) BASIC14.09□□□□□ -0.15
LINC00643Q86TS7 ENTPD6-203ENST00000376652 2750 ntAPPRIS P3 TSL 1 (best) BASIC14.09□□□□□ -0.15
LINC00643Q86TS7 NYAP1-202ENST00000454988 2777 ntTSL 5 BASIC14.09□□□□□ -0.15
LINC00643Q86TS7 FAM66B-202ENST00000606573 2630 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
LINC00643Q86TS7 MRPL38-201ENST00000309352 1888 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
LINC00643Q86TS7 MATR3-206ENST00000503811 2518 ntTSL 2 BASIC14.09□□□□□ -0.15
LINC00643Q86TS7 PLPP5-203ENST00000424479 2130 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
LINC00643Q86TS7 ASCL5-201ENST00000449188 2026 ntAPPRIS P1 TSL 3 BASIC14.08□□□□□ -0.15
LINC00643Q86TS7 PRSS12-201ENST00000296498 4809 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.15
LINC00643Q86TS7 ABHD13-201ENST00000375898 5338 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.15
LINC00643Q86TS7 ARHGAP23-222ENST00000622683 5964 ntAPPRIS P2 TSL 5 BASIC14.08□□□□□ -0.16
LINC00643Q86TS7 PTGER3-204ENST00000356595 1943 ntAPPRIS P4 TSL 1 (best) BASIC14.08□□□□□ -0.16
LINC00643Q86TS7 PTGER3-207ENST00000370931 1914 ntAPPRIS ALT2 TSL 1 (best) BASIC14.08□□□□□ -0.16
LINC00643Q86TS7 NKIRAS2-206ENST00000393885 1909 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
LINC00643Q86TS7 ILF3-217ENST00000589998 2622 ntTSL 2 BASIC14.08□□□□□ -0.16
LINC00643Q86TS7 LY6K-203ENST00000519387 963 ntAPPRIS ALT2 TSL 2 BASIC14.08□□□□□ -0.16
LINC00643Q86TS7 LINC01578-203ENST00000554669 578 ntTSL 5 BASIC14.08□□□□□ -0.16
LINC00643Q86TS7 SPNS2-201ENST00000329078 3447 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
LINC00643Q86TS7 OSCAR-209ENST00000616215 2016 ntAPPRIS ALT2 TSL 5 BASIC14.08□□□□□ -0.16
LINC00643Q86TS7 TMC5-203ENST00000396229 4917 ntAPPRIS ALT2 TSL 5 BASIC14.08□□□□□ -0.16
LINC00643Q86TS7 HGH1-201ENST00000347708 2531 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
LINC00643Q86TS7 ZNF784-202ENST00000591479 1559 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
LINC00643Q86TS7 ADARB2-202ENST00000381310 1810 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
LINC00643Q86TS7 OSCAR-201ENST00000284648 2055 ntAPPRIS ALT2 TSL 1 (best) BASIC14.08□□□□□ -0.16
LINC00643Q86TS7 AL020996.1-203ENST00000536896 2307 ntBASIC14.08□□□□□ -0.16
LINC00643Q86TS7 DISC1-213ENST00000537876 2349 ntAPPRIS ALT2 TSL 2 BASIC14.08□□□□□ -0.16
LINC00643Q86TS7 NAT16-201ENST00000300303 2935 ntAPPRIS P2 TSL 2 BASIC14.08□□□□□ -0.16
LINC00643Q86TS7 ANO8-204ENST00000630631 1905 ntTSL 5 BASIC14.07□□□□□ -0.16
LINC00643Q86TS7 KCTD20-210ENST00000536244 5345 ntTSL 2 BASIC14.07□□□□□ -0.16
LINC00643Q86TS7 TNFRSF10B-202ENST00000347739 1723 ntAPPRIS ALT2 TSL 1 (best) BASIC14.07□□□□□ -0.16
LINC00643Q86TS7 CCR10-201ENST00000332438 1773 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
LINC00643Q86TS7 MAPT-210ENST00000535772 5718 ntTSL 5 BASIC14.07□□□□□ -0.16
LINC00643Q86TS7 PAQR6-202ENST00000335852 2117 ntTSL 2 BASIC14.07□□□□□ -0.16
LINC00643Q86TS7 INO80B-203ENST00000409917 796 ntTSL 2 BASIC14.07□□□□□ -0.16
LINC00643Q86TS7 TRAK1-209ENST00000487159 5536 ntAPPRIS ALT2 TSL 5 BASIC14.07□□□□□ -0.16
LINC00643Q86TS7 EVA1C-203ENST00000401402 1558 ntTSL 5 BASIC14.07□□□□□ -0.16
LINC00643Q86TS7 ATP6V0E2-203ENST00000456496 2722 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
LINC00643Q86TS7 ATP6V0E2-213ENST00000615196 2727 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
LINC00643Q86TS7 PAIP1-208ENST00000514514 1603 ntTSL 5 BASIC14.07□□□□□ -0.16
LINC00643Q86TS7 AOC3-204ENST00000591562 2522 ntTSL 2 BASIC14.07□□□□□ -0.16
LINC00643Q86TS7 PAN3-201ENST00000380958 2833 ntAPPRIS P2 TSL 5 BASIC14.07□□□□□ -0.16
LINC00643Q86TS7 ADAD2-201ENST00000268624 2283 ntAPPRIS P3 TSL 2 BASIC14.07□□□□□ -0.16
LINC00643Q86TS7 ACBD4-214ENST00000591859 1998 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
LINC00643Q86TS7 KANK3-203ENST00000593649 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC14.07□□□□□ -0.16
LINC00643Q86TS7 NAB2-201ENST00000300131 2711 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
LINC00643Q86TS7 CIZ1-206ENST00000372954 2731 ntAPPRIS ALT2 TSL 1 (best) BASIC14.06□□□□□ -0.16
LINC00643Q86TS7 FBXO27-202ENST00000509137 2130 ntAPPRIS P2 TSL 1 (best) BASIC14.06□□□□□ -0.16
LINC00643Q86TS7 ECE2-203ENST00000359140 3147 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
LINC00643Q86TS7 TMIE-201ENST00000326431 1824 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
LINC00643Q86TS7 AC092053.2-201ENST00000640557 1818 ntBASIC14.06□□□□□ -0.16
LINC00643Q86TS7 PRR14-202ENST00000300835 2198 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
LINC00643Q86TS7 RRAS2-201ENST00000256196 1516 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
LINC00643Q86TS7 CCM2-206ENST00000474617 1532 ntTSL 5 BASIC14.06□□□□□ -0.16
LINC00643Q86TS7 ADAM33-202ENST00000356518 3677 ntAPPRIS P3 TSL 1 (best) BASIC14.06□□□□□ -0.16
LINC00643Q86TS7 RAB1A-204ENST00000409892 2254 ntTSL 2 BASIC14.06□□□□□ -0.16
LINC00643Q86TS7 P2RY2-201ENST00000311131 2660 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
LINC00643Q86TS7 GRK4-206ENST00000504933 1971 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
LINC00643Q86TS7 PCMT1-202ENST00000367380 1628 ntTSL 2 BASIC14.06□□□□□ -0.16
LINC00643Q86TS7 PCMT1-211ENST00000544496 1628 ntTSL 2 BASIC14.06□□□□□ -0.16
LINC00643Q86TS7 NECAB1-201ENST00000417640 5289 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
LINC00643Q86TS7 IL1R1-205ENST00000410023 5143 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
LINC00643Q86TS7 PTP4A3-204ENST00000521578 1717 ntAPPRIS P1 TSL 5 BASIC14.06□□□□□ -0.16
LINC00643Q86TS7 AC092068.2-201ENST00000590491 1708 ntBASIC14.06□□□□□ -0.16
LINC00643Q86TS7 INTS11-208ENST00000435064 2148 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
LINC00643Q86TS7 CAPNS1-216ENST00000628306 1389 ntTSL 5 BASIC14.06□□□□□ -0.16
LINC00643Q86TS7 POLE2-202ENST00000539565 1792 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
LINC00643Q86TS7 SUMF1-201ENST00000272902 2159 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
LINC00643Q86TS7 HSD3B7-202ENST00000297679 2172 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
LINC00643Q86TS7 KCNH2-201ENST00000262186 4286 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
LINC00643Q86TS7 CNN3-202ENST00000394202 1974 ntTSL 2 BASIC14.05□□□□□ -0.16
LINC00643Q86TS7 CPEB1-218ENST00000620182 2422 ntTSL 2 BASIC14.05□□□□□ -0.16
LINC00643Q86TS7 RRAD-201ENST00000299759 1569 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
LINC00643Q86TS7 SMPD1-201ENST00000342245 2452 ntAPPRIS ALT1 TSL 1 (best) BASIC14.05□□□□□ -0.16
LINC00643Q86TS7 CCDC185-201ENST00000366875 2054 ntAPPRIS P1 BASIC14.05□□□□□ -0.16
LINC00643Q86TS7 IFNL4-201ENST00000606380 1637 ntAPPRIS P5 TSL 1 (best) BASIC14.05□□□□□ -0.16
LINC00643Q86TS7 VAX1-202ENST00000369206 1723 ntAPPRIS P1 TSL 5 BASIC14.05□□□□□ -0.16
LINC00643Q86TS7 CDHR5-201ENST00000349570 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC14.05□□□□□ -0.16
LINC00643Q86TS7 SYDE2-202ENST00000341460 5512 ntAPPRIS P1 TSL 5 BASIC14.05□□□□□ -0.16
LINC00643Q86TS7 CATIP-201ENST00000289388 1323 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
LINC00643Q86TS7 GRM5-202ENST00000305447 4571 ntAPPRIS ALT2 TSL 1 (best) BASIC14.05□□□□□ -0.16
LINC00643Q86TS7 COL13A1-202ENST00000357811 2991 ntAPPRIS ALT2 TSL 5 BASIC14.05□□□□□ -0.16
LINC00643Q86TS7 DMPK-205ENST00000458663 2548 ntTSL 5 BASIC14.05□□□□□ -0.16
LINC00643Q86TS7 NOM1-201ENST00000275820 6077 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
LINC00643Q86TS7 ZNF48-201ENST00000320159 3234 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
LINC00643Q86TS7 MCAT-201ENST00000290429 2056 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
LINC00643Q86TS7 DLL3-202ENST00000356433 2055 ntAPPRIS P1 TSL 2 BASIC14.05□□□□□ -0.16
LINC00643Q86TS7 BCAP31-201ENST00000345046 1589 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
LINC00643Q86TS7 LINC00094-201ENST00000432807 2300 ntAPPRIS ALT2 TSL 2 BASIC14.04□□□□□ -0.16
LINC00643Q86TS7 C18orf25-204ENST00000615553 2329 ntTSL 5 BASIC14.04□□□□□ -0.16
LINC00643Q86TS7 MARCKSL1-201ENST00000329421 1699 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
LINC00643Q86TS7 CDK13-202ENST00000340829 5066 ntAPPRIS ALT1 TSL 1 (best) BASIC14.04□□□□□ -0.16
LINC00643Q86TS7 CHRNB2-205ENST00000637900 2390 ntAPPRIS ALT1 TSL 5 BASIC14.04□□□□□ -0.16
LINC00643Q86TS7 TLE3-201ENST00000317509 5207 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
LINC00643Q86TS7 RNF149-201ENST00000295317 2458 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
LINC00643Q86TS7 EID2B-201ENST00000326282 1865 ntAPPRIS P1 BASIC14.04□□□□□ -0.16
LINC00643Q86TS7 CLN5-201ENST00000377453 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC14.04□□□□□ -0.16
LINC00643Q86TS7 DACT1-204ENST00000541264 2610 ntAPPRIS ALT2 TSL 2 BASIC14.04□□□□□ -0.16
LINC00643Q86TS7 DNAJC7-203ENST00000457167 2022 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Retrieved 100 of 98,524 protein–RNA pairs in 15.2 ms