Protein–RNA interactions for Protein: Q5TC82

RC3H1, Roquin-1, humanhuman

Known RBP Predictions only

Length 1,133 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RC3H1Q5TC82 RPUSD1-201ENST00000007264 2050 ntAPPRIS P1 TSL 2 BASIC28.7■■■□□ 2.18
RC3H1Q5TC82 CCDC85B-201ENST00000312579 1524 ntAPPRIS P1 BASIC28.69■■■□□ 2.18
RC3H1Q5TC82 DHRS13-202ENST00000394901 2037 ntTSL 1 (best) BASIC28.69■■■□□ 2.18
RC3H1Q5TC82 CAMKMT-202ENST00000402247 665 ntTSL 2 BASIC28.69■■■□□ 2.18
RC3H1Q5TC82 CIRBP-222ENST00000589235 1073 ntAPPRIS ALT1 TSL 2 BASIC28.69■■■□□ 2.18
RC3H1Q5TC82 AL032819.3-201ENST00000640283 925 ntAPPRIS P1 TSL 5 BASIC28.69■■■□□ 2.18
RC3H1Q5TC82 FP325331.1-202ENST00000623531 1380 ntBASIC28.69■■■□□ 2.18
RC3H1Q5TC82 DISC1-220ENST00000602873 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC28.68■■■□□ 2.18
RC3H1Q5TC82 MIR31HG-201ENST00000304425 745 ntTSL 2 BASIC28.68■■■□□ 2.18
RC3H1Q5TC82 AP2S1-203ENST00000593442 636 ntTSL 2 BASIC28.68■■■□□ 2.18
RC3H1Q5TC82 AC004528.2-201ENST00000610701 440 ntTSL 5 BASIC28.68■■■□□ 2.18
RC3H1Q5TC82 RPUSD1-207ENST00000565809 1918 ntTSL 2 BASIC28.68■■■□□ 2.18
RC3H1Q5TC82 ANO8-204ENST00000630631 1905 ntTSL 5 BASIC28.68■■■□□ 2.18
RC3H1Q5TC82 SETD9-201ENST00000285947 1619 ntAPPRIS P1 TSL 1 (best) BASIC28.68■■■□□ 2.18
RC3H1Q5TC82 RASD1-202ENST00000579152 1404 ntTSL 2 BASIC28.68■■■□□ 2.18
RC3H1Q5TC82 MPST-204ENST00000404393 1329 ntTSL 5 BASIC28.68■■■□□ 2.18
RC3H1Q5TC82 PHF23-205ENST00000571362 1768 ntTSL 2 BASIC28.67■■■□□ 2.18
RC3H1Q5TC82 AC091060.1-201ENST00000623524 1766 ntBASIC28.67■■■□□ 2.18
RC3H1Q5TC82 DNAJB11-201ENST00000265028 1688 ntAPPRIS P1 TSL 1 (best) BASIC28.67■■■□□ 2.18
RC3H1Q5TC82 C2CD4B-201ENST00000380392 1579 ntAPPRIS P1 TSL 2 BASIC28.67■■■□□ 2.18
RC3H1Q5TC82 MAPK8IP1P2-201ENST00000580257 1472 ntBASIC28.67■■■□□ 2.18
RC3H1Q5TC82 NUDT18-201ENST00000611621 1497 ntAPPRIS P1 TSL 1 (best) BASIC28.67■■■□□ 2.18
RC3H1Q5TC82 NDUFS3-201ENST00000263774 958 ntAPPRIS P1 TSL 1 (best) BASIC28.67■■■□□ 2.18
RC3H1Q5TC82 FGF12-AS2-201ENST00000443165 580 ntTSL 4 BASIC28.67■■■□□ 2.18
RC3H1Q5TC82 AC005410.1-201ENST00000579522 462 ntTSL 3 BASIC28.67■■■□□ 2.18
RC3H1Q5TC82 ELANE-202ENST00000590230 1028 ntAPPRIS P1 TSL 5 BASIC28.67■■■□□ 2.18
RC3H1Q5TC82 SETD9-211ENST00000628593 1306 ntTSL 1 (best) BASIC28.67■■■□□ 2.18
RC3H1Q5TC82 NDUFAF1-201ENST00000260361 1461 ntAPPRIS P1 TSL 1 (best) BASIC28.66■■■□□ 2.18
RC3H1Q5TC82 ARHGEF9-210ENST00000623517 2143 ntTSL 2 BASIC28.66■■■□□ 2.18
RC3H1Q5TC82 DUX4L4-201ENST00000566884 1269 ntBASIC28.66■■■□□ 2.18
RC3H1Q5TC82 C6orf201-202ENST00000380175 1834 ntAPPRIS P1 TSL 1 (best) BASIC28.66■■■□□ 2.18
RC3H1Q5TC82 GTPBP3-202ENST00000358792 1951 ntAPPRIS P4 TSL 2 BASIC28.66■■■□□ 2.18
RC3H1Q5TC82 C8orf58-206ENST00000614574 1955 ntAPPRIS ALT2 TSL 5 BASIC28.66■■■□□ 2.18
RC3H1Q5TC82 GLI4-201ENST00000340042 1341 ntAPPRIS P1 TSL 1 (best) BASIC28.66■■■□□ 2.18
RC3H1Q5TC82 DYRK2-203ENST00000393555 2209 ntAPPRIS ALT1 TSL 1 (best) BASIC28.65■■■□□ 2.18
RC3H1Q5TC82 CAPZB-203ENST00000375142 1686 ntAPPRIS ALT1 TSL 5 BASIC28.65■■■□□ 2.18
RC3H1Q5TC82 LTBP3-212ENST00000529189 1997 ntTSL 2 BASIC28.65■■■□□ 2.18
RC3H1Q5TC82 MOSPD3-202ENST00000379527 1016 ntAPPRIS P1 TSL 5 BASIC28.65■■■□□ 2.18
RC3H1Q5TC82 NT5C3AP1-201ENST00000394500 1012 ntBASIC28.65■■■□□ 2.18
RC3H1Q5TC82 FBXW5-201ENST00000325285 2274 ntAPPRIS P1 TSL 1 (best) BASIC28.65■■■□□ 2.18
RC3H1Q5TC82 SIGLEC15-201ENST00000389474 1573 ntAPPRIS P1 TSL 1 (best) BASIC28.65■■■□□ 2.18
RC3H1Q5TC82 MTX2-201ENST00000249442 1364 ntAPPRIS P1 TSL 1 (best) BASIC28.64■■■□□ 2.18
RC3H1Q5TC82 OLFM1-206ENST00000371799 961 ntTSL 1 (best) BASIC28.64■■■□□ 2.18
RC3H1Q5TC82 ITGA9-AS1-210ENST00000457661 738 ntTSL 4 BASIC28.64■■■□□ 2.18
RC3H1Q5TC82 AC068385.1-201ENST00000533218 409 ntTSL 3 BASIC28.64■■■□□ 2.18
RC3H1Q5TC82 WNT11-201ENST00000322563 1930 ntAPPRIS P1 TSL 1 (best) BASIC28.64■■■□□ 2.18
RC3H1Q5TC82 AC145676.1-201ENST00000514988 2004 ntBASIC28.64■■■□□ 2.17
RC3H1Q5TC82 KDELR1-203ENST00000597017 1594 ntTSL 2 BASIC28.63■■■□□ 2.17
RC3H1Q5TC82 GZMM-201ENST00000264553 940 ntAPPRIS P1 TSL 1 (best) BASIC28.63■■■□□ 2.17
RC3H1Q5TC82 GNAO1-211ENST00000570235 568 ntTSL 2 BASIC28.63■■■□□ 2.17
RC3H1Q5TC82 TMEM191B-201ENST00000612978 1220 ntAPPRIS P2 TSL 5 BASIC28.63■■■□□ 2.17
RC3H1Q5TC82 SPANXA2-OT1-201ENST00000622372 1686 ntTSL 2 BASIC28.63■■■□□ 2.17
RC3H1Q5TC82 PSIP1-202ENST00000380716 1889 ntTSL 5 BASIC28.63■■■□□ 2.17
RC3H1Q5TC82 DCAF4-206ENST00000509153 1521 ntAPPRIS ALT2 TSL 2 BASIC28.63■■■□□ 2.17
RC3H1Q5TC82 GPR35-204ENST00000430267 1399 ntAPPRIS ALT2 TSL 5 BASIC28.62■■■□□ 2.17
RC3H1Q5TC82 RFLNA-205ENST00000546355 2354 ntAPPRIS ALT1 TSL 1 (best) BASIC28.62■■■□□ 2.17
RC3H1Q5TC82 ACSS1-202ENST00000376726 2244 ntTSL 2 BASIC28.62■■■□□ 2.17
RC3H1Q5TC82 UCN-201ENST00000296099 795 ntAPPRIS P1 TSL 1 (best) BASIC28.62■■■□□ 2.17
RC3H1Q5TC82 PGAP3-204ENST00000429199 970 ntTSL 2 BASIC28.62■■■□□ 2.17
RC3H1Q5TC82 TMEM182-210ENST00000639249 1025 ntTSL 5 BASIC28.62■■■□□ 2.17
RC3H1Q5TC82 UBALD1-208ENST00000591401 1305 ntTSL 5 BASIC28.62■■■□□ 2.17
RC3H1Q5TC82 ALG2-203ENST00000476832 1880 ntAPPRIS P1 TSL 1 (best) BASIC28.61■■■□□ 2.17
RC3H1Q5TC82 IRF3-207ENST00000593922 1494 ntTSL 1 (best) BASIC28.61■■■□□ 2.17
RC3H1Q5TC82 CDC20-202ENST00000372462 1777 ntAPPRIS P1 TSL 1 (best) BASIC28.61■■■□□ 2.17
RC3H1Q5TC82 RING1-201ENST00000374656 1752 ntAPPRIS P1 TSL 1 (best) BASIC28.61■■■□□ 2.17
RC3H1Q5TC82 ACAD8-202ENST00000374752 1797 ntTSL 2 BASIC28.61■■■□□ 2.17
RC3H1Q5TC82 TAF9-201ENST00000217893 1283 ntAPPRIS P2 TSL 1 (best) BASIC28.61■■■□□ 2.17
RC3H1Q5TC82 NFKBIB-201ENST00000313582 1159 ntAPPRIS P1 TSL 1 (best) BASIC28.61■■■□□ 2.17
RC3H1Q5TC82 HLA-L-209ENST00000420110 1011 ntBASIC28.61■■■□□ 2.17
RC3H1Q5TC82 AC006015.1-201ENST00000429970 570 ntBASIC28.61■■■□□ 2.17
RC3H1Q5TC82 ATP6V0E2-204ENST00000464662 513 ntAPPRIS P1 TSL 2 BASIC28.61■■■□□ 2.17
RC3H1Q5TC82 LINC02043-201ENST00000419745 1832 ntTSL 2 BASIC28.61■■■□□ 2.17
RC3H1Q5TC82 HAR1A-201ENST00000433161 1882 ntTSL 1 (best) BASIC28.61■■■□□ 2.17
RC3H1Q5TC82 NPDC1-201ENST00000371600 2187 ntAPPRIS ALT2 TSL 1 (best) BASIC28.61■■■□□ 2.17
RC3H1Q5TC82 MTMR1-202ENST00000370390 2755 ntAPPRIS P1 TSL 1 (best) BASIC28.61■■■□□ 2.17
RC3H1Q5TC82 CLN3-207ENST00000395653 1430 ntTSL 5 BASIC28.6■■■□□ 2.17
RC3H1Q5TC82 SPIRE2-205ENST00000563972 1823 ntTSL 1 (best) BASIC28.6■■■□□ 2.17
RC3H1Q5TC82 EIF3J-202ENST00000424492 1550 ntTSL 4 BASIC28.6■■■□□ 2.17
RC3H1Q5TC82 MYD88-205ENST00000424893 1279 ntAPPRIS ALT2 TSL 1 (best) BASIC28.6■■■□□ 2.17
RC3H1Q5TC82 IDNK-204ENST00000454393 1210 ntTSL 3 BASIC28.6■■■□□ 2.17
RC3H1Q5TC82 NDUFB2-207ENST00000465506 1101 ntAPPRIS P1 TSL 1 (best) BASIC28.6■■■□□ 2.17
RC3H1Q5TC82 SLC22A18-201ENST00000312221 1628 ntAPPRIS P1 TSL 1 (best) BASIC28.6■■■□□ 2.17
RC3H1Q5TC82 BDH1-207ENST00000441275 1605 ntTSL 5 BASIC28.6■■■□□ 2.17
RC3H1Q5TC82 TMEM41B-207ENST00000611268 1440 ntAPPRIS P1 TSL 1 (best) BASIC28.6■■■□□ 2.17
RC3H1Q5TC82 TBR1-202ENST00000410035 1454 ntTSL 2 BASIC28.59■■■□□ 2.17
RC3H1Q5TC82 FAM110A-206ENST00000541082 1614 ntAPPRIS P1 TSL 3 BASIC28.59■■■□□ 2.17
RC3H1Q5TC82 NEDD8-201ENST00000250495 708 ntAPPRIS P1 TSL 1 (best) BASIC28.59■■■□□ 2.17
RC3H1Q5TC82 UBE2D3-201ENST00000321805 1087 ntAPPRIS ALT1 TSL 5 BASIC28.59■■■□□ 2.17
RC3H1Q5TC82 PHLDA3-201ENST00000367309 896 ntAPPRIS P1 TSL 5 BASIC28.59■■■□□ 2.17
RC3H1Q5TC82 ASMT-202ENST00000381233 989 ntTSL 1 (best) BASIC28.59■■■□□ 2.17
RC3H1Q5TC82 MPRIP-203ENST00000395806 527 ntTSL 3 BASIC28.59■■■□□ 2.17
RC3H1Q5TC82 TMEM230-210ENST00000612323 1231 ntTSL 1 (best) BASIC28.59■■■□□ 2.17
RC3H1Q5TC82 AC105233.4-201ENST00000642045 216 ntBASIC28.59■■■□□ 2.17
RC3H1Q5TC82 SPG21-201ENST00000204566 1822 ntAPPRIS P1 TSL 1 (best) BASIC28.59■■■□□ 2.17
RC3H1Q5TC82 DGCR6-208ENST00000608842 1837 ntTSL 2 BASIC28.59■■■□□ 2.17
RC3H1Q5TC82 GABRA5-203ENST00000400081 2761 ntAPPRIS P1 TSL 5 BASIC28.59■■■□□ 2.17
RC3H1Q5TC82 MRPL37-202ENST00000360840 1483 ntAPPRIS P1 TSL 1 (best) BASIC28.59■■■□□ 2.17
RC3H1Q5TC82 BBC3-202ENST00000341983 1538 ntTSL 1 (best) BASIC28.59■■■□□ 2.17
RC3H1Q5TC82 NXPH3-201ENST00000328741 2179 ntAPPRIS P1 TSL 1 (best) BASIC28.58■■■□□ 2.17
RC3H1Q5TC82 SLC9A3R2-201ENST00000424542 2194 ntAPPRIS P1 TSL 1 (best) BASIC28.58■■■□□ 2.17
Retrieved 100 of 98,524 protein–RNA pairs in 14 ms