Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 SLC10A4-201ENST00000273861 1790 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
SOX3P41225 HAS1-201ENST00000222115 2087 ntAPPRIS P3 TSL 1 (best) BASIC21■□□□□ 0.95
SOX3P41225 AK8-201ENST00000298545 2072 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
SOX3P41225 OSCAR-203ENST00000356532 1355 ntAPPRIS ALT2 TSL 1 (best) BASIC20.99■□□□□ 0.95
SOX3P41225 OSCAR-204ENST00000358375 1389 ntAPPRIS ALT2 TSL 1 (best) BASIC20.99■□□□□ 0.95
SOX3P41225 OSCAR-210ENST00000616447 1358 ntAPPRIS ALT2 TSL 5 BASIC20.99■□□□□ 0.95
SOX3P41225 H2AFY-217ENST00000511689 2789 ntAPPRIS P4 TSL 1 (best) BASIC20.99■□□□□ 0.95
SOX3P41225 MYBL2-201ENST00000217026 2639 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
SOX3P41225 STOML1-201ENST00000316900 2169 ntTSL 2 BASIC20.99■□□□□ 0.95
SOX3P41225 CDKN3-207ENST00000543789 610 ntTSL 5 BASIC20.99■□□□□ 0.95
SOX3P41225 BCL11B-203ENST00000443726 2599 ntAPPRIS ALT2 TSL 5 BASIC20.99■□□□□ 0.95
SOX3P41225 DLL3-201ENST00000205143 2332 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
SOX3P41225 HOXA10-201ENST00000283921 2541 ntAPPRIS P2 TSL 1 (best) BASIC20.99■□□□□ 0.95
SOX3P41225 HSD11B1L-206ENST00000423665 1525 ntAPPRIS ALT2 TSL 1 (best) BASIC20.99■□□□□ 0.95
SOX3P41225 ZFYVE19-201ENST00000299173 1555 ntAPPRIS ALT2 TSL 1 (best) BASIC20.98■□□□□ 0.95
SOX3P41225 U2AF2-202ENST00000450554 3022 ntAPPRIS ALT1 TSL 1 (best) BASIC20.98■□□□□ 0.95
SOX3P41225 DMRT2-209ENST00000635183 2190 ntTSL 5 BASIC20.98■□□□□ 0.95
SOX3P41225 PABPC1L-202ENST00000217074 1263 ntTSL 5 BASIC20.98■□□□□ 0.95
SOX3P41225 EPDR1-202ENST00000423717 638 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
SOX3P41225 PABPN1-207ENST00000556821 1220 ntTSL 2 BASIC20.98■□□□□ 0.95
SOX3P41225 PNKP-201ENST00000322344 2041 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
SOX3P41225 ALDH1A3-203ENST00000557963 1670 ntBASIC20.98■□□□□ 0.95
SOX3P41225 CDIPT-201ENST00000219789 2353 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
SOX3P41225 GFRA4-201ENST00000290417 1427 ntAPPRIS ALT2 TSL 1 (best) BASIC20.97■□□□□ 0.95
SOX3P41225 SUMF1-202ENST00000383843 1447 ntTSL 2 BASIC20.97■□□□□ 0.95
SOX3P41225 ZNF503-AS2-202ENST00000466942 1430 ntTSL 2 BASIC20.97■□□□□ 0.95
SOX3P41225 ADPRHL2-201ENST00000373178 1668 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
SOX3P41225 NKX6-3-202ENST00000524115 1683 ntTSL 2 BASIC20.97■□□□□ 0.95
SOX3P41225 PCYT2-201ENST00000331285 2147 ntTSL 2 BASIC20.97■□□□□ 0.95
SOX3P41225 B3GALT6-201ENST00000379198 2777 ntAPPRIS P1 BASIC20.97■□□□□ 0.95
SOX3P41225 CCDC151-203ENST00000591179 1943 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
SOX3P41225 ADSSL1-201ENST00000330877 1766 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
SOX3P41225 GMPPB-202ENST00000308388 1582 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
SOX3P41225 BOP1-205ENST00000569669 2303 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
SOX3P41225 PRMT5-213ENST00000553897 1857 ntTSL 2 BASIC20.96■□□□□ 0.95
SOX3P41225 SLC2A8-203ENST00000373371 2172 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
SOX3P41225 LINGO3-201ENST00000585527 2241 ntAPPRIS P1 BASIC20.96■□□□□ 0.95
SOX3P41225 SHMT1-201ENST00000316694 2464 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
SOX3P41225 DTNB-210ENST00000407186 2275 ntTSL 5 BASIC20.96■□□□□ 0.95
SOX3P41225 LHPP-201ENST00000368839 1522 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
SOX3P41225 KRTAP5-1-201ENST00000382171 942 ntAPPRIS P1 BASIC20.96■□□□□ 0.95
SOX3P41225 SERTAD4-AS1-202ENST00000475406 591 ntTSL 2 BASIC20.96■□□□□ 0.95
SOX3P41225 SSR2-210ENST00000480567 895 ntAPPRIS P1 TSL 2 BASIC20.96■□□□□ 0.95
SOX3P41225 AC019163.1-201ENST00000512634 610 ntTSL 2 BASIC20.96■□□□□ 0.95
SOX3P41225 ARHGAP27-207ENST00000528273 2319 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
SOX3P41225 MAP6D1-201ENST00000318631 2111 ntAPPRIS P2 TSL 1 (best) BASIC20.96■□□□□ 0.95
SOX3P41225 NRG3-201ENST00000372141 2158 ntAPPRIS P3 TSL 1 (best) BASIC20.96■□□□□ 0.95
SOX3P41225 TSNARE1-208ENST00000524325 1963 ntAPPRIS P3 TSL 2 BASIC20.96■□□□□ 0.95
SOX3P41225 MAGI2-201ENST00000354212 6880 ntAPPRIS P3 TSL 1 (best) BASIC20.95■□□□□ 0.94
SOX3P41225 UBFD1-208ENST00000567264 642 ntAPPRIS ALT2 TSL 5 BASIC20.95■□□□□ 0.94
SOX3P41225 MRGPRF-AS1-203ENST00000569432 542 ntTSL 4 BASIC20.95■□□□□ 0.94
SOX3P41225 HOMER2-201ENST00000304231 1990 ntAPPRIS P4 TSL 5 BASIC20.95■□□□□ 0.94
SOX3P41225 NFE2L3P1-201ENST00000588207 1959 ntBASIC20.95■□□□□ 0.94
SOX3P41225 NCK2-201ENST00000233154 2683 ntAPPRIS P1 TSL 5 BASIC20.95■□□□□ 0.94
SOX3P41225 PKM-201ENST00000319622 2717 ntAPPRIS P5 TSL 2 BASIC20.95■□□□□ 0.94
SOX3P41225 HHEX-201ENST00000282728 1727 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
SOX3P41225 PSIP1-202ENST00000380716 1889 ntTSL 5 BASIC20.94■□□□□ 0.94
SOX3P41225 EI24-204ENST00000527235 1625 ntTSL 5 BASIC20.94■□□□□ 0.94
SOX3P41225 LY6H-205ENST00000615409 980 ntAPPRIS P3 TSL 1 (best) BASIC20.94■□□□□ 0.94
SOX3P41225 RASEF-201ENST00000340717 1765 ntTSL 2 BASIC20.94■□□□□ 0.94
SOX3P41225 DNAJC25-GNG10-201ENST00000374294 1448 ntAPPRIS P1 TSL 2 BASIC20.94■□□□□ 0.94
SOX3P41225 HES6-201ENST00000272937 1454 ntAPPRIS P3 TSL 1 (best) BASIC20.94■□□□□ 0.94
SOX3P41225 AMZ2-219ENST00000612294 1498 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
SOX3P41225 NRG2-201ENST00000289409 2535 ntAPPRIS ALT2 TSL 5 BASIC20.94■□□□□ 0.94
SOX3P41225 WT1-204ENST00000448076 2114 ntAPPRIS ALT2 TSL 2 BASIC20.93■□□□□ 0.94
SOX3P41225 STARD3NL-201ENST00000009041 1728 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
SOX3P41225 AC099805.1-201ENST00000523987 1797 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
SOX3P41225 SRSF11-203ENST00000370951 2385 ntAPPRIS ALT2 TSL 1 (best) BASIC20.93■□□□□ 0.94
SOX3P41225 MT2A-201ENST00000245185 786 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
SOX3P41225 SDHAP1-204ENST00000427415 559 ntTSL 4 BASIC20.93■□□□□ 0.94
SOX3P41225 HOXA11-AS1_1.1-201ENST00000613939 98 ntBASIC20.93■□□□□ 0.94
SOX3P41225 DLK2-201ENST00000357338 2038 ntAPPRIS P3 TSL 2 BASIC20.93■□□□□ 0.94
SOX3P41225 BEST2-204ENST00000553030 2000 ntAPPRIS P1 TSL 5 BASIC20.93■□□□□ 0.94
SOX3P41225 NAT8L-202ENST00000423729 5870 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
SOX3P41225 HSPBP1-202ENST00000433386 1572 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
SOX3P41225 USF2-207ENST00000595068 1612 ntTSL 5 BASIC20.93■□□□□ 0.94
SOX3P41225 PFKP-201ENST00000381072 1698 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
SOX3P41225 ADORA2B-201ENST00000304222 1735 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
SOX3P41225 C6orf201-202ENST00000380175 1834 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
SOX3P41225 GRK4-202ENST00000398051 2068 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
SOX3P41225 TSSK1B-201ENST00000390666 2478 ntAPPRIS P1 BASIC20.92■□□□□ 0.94
SOX3P41225 AL357078.1-201ENST00000448344 310 ntTSL 4 BASIC20.92■□□□□ 0.94
SOX3P41225 IER5L-201ENST00000372491 2711 ntAPPRIS P1 BASIC20.92■□□□□ 0.94
SOX3P41225 PLPP2-202ENST00000327790 1397 ntTSL 5 BASIC20.92■□□□□ 0.94
SOX3P41225 RCE1-202ENST00000524506 1379 ntTSL 5 BASIC20.92■□□□□ 0.94
SOX3P41225 C1QTNF1-207ENST00000580454 1396 ntAPPRIS P1 TSL 5 BASIC20.92■□□□□ 0.94
SOX3P41225 B3GNT4-201ENST00000324189 1642 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
SOX3P41225 ZNF444-211ENST00000592949 1906 ntAPPRIS ALT2 TSL 1 (best) BASIC20.92■□□□□ 0.94
SOX3P41225 KLC1-227ENST00000634686 2229 ntTSL 5 BASIC20.92■□□□□ 0.94
SOX3P41225 EFCC1-201ENST00000436022 2691 ntAPPRIS P1 TSL 5 BASIC20.91■□□□□ 0.94
SOX3P41225 ACTL10-201ENST00000330271 2028 ntAPPRIS P1 BASIC20.91■□□□□ 0.94
SOX3P41225 NIPA2-202ENST00000359727 1531 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
SOX3P41225 C20orf27-202ENST00000379772 1886 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
SOX3P41225 TMEM80-201ENST00000397510 1094 ntAPPRIS P2 TSL 5 BASIC20.91■□□□□ 0.94
SOX3P41225 MAPKAPK5-AS1-201ENST00000428207 2290 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
SOX3P41225 SRD5A1P1-201ENST00000442297 786 ntBASIC20.91■□□□□ 0.94
SOX3P41225 CDKN2A-208ENST00000498124 880 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
SOX3P41225 TOLLIP-208ENST00000527938 549 ntTSL 4 BASIC20.91■□□□□ 0.94
SOX3P41225 IQCD-203ENST00000546692 1872 ntTSL 5 BASIC20.91■□□□□ 0.94
SOX3P41225 SPNS1-207ENST00000565975 1979 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
Retrieved 100 of 98,524 protein–RNA pairs in 15.5 ms