Protein–RNA interactions for Protein: O00555

CACNA1A, Voltage-dependent P/Q-type calcium channel subunit alpha-1A, humanhuman

Predictions only

Length 2,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CACNA1AO00555 LURAP1L-201ENST00000319264 1753 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
CACNA1AO00555 SDCCAG3-201ENST00000298537 2314 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
CACNA1AO00555 SMIM19-203ENST00000417410 1466 ntAPPRIS P1 TSL 2 BASIC21.62■■□□□ 1.05
CACNA1AO00555 HAUS7-202ENST00000370211 1363 ntAPPRIS P2 TSL 1 (best) BASIC21.62■■□□□ 1.05
CACNA1AO00555 RPS6-203ENST00000380384 1355 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
CACNA1AO00555 PGM5P2-201ENST00000613141 1980 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
CACNA1AO00555 PRMT2-204ENST00000397628 954 ntTSL 2 BASIC21.62■■□□□ 1.05
CACNA1AO00555 REPIN1-217ENST00000518514 478 ntTSL 3 BASIC21.62■■□□□ 1.05
CACNA1AO00555 SNHG12-212ENST00000531126 719 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
CACNA1AO00555 ULK4P1-204ENST00000565949 721 ntTSL 4 BASIC21.62■■□□□ 1.05
CACNA1AO00555 SLC25A39-201ENST00000225308 1607 ntAPPRIS P3 TSL 1 (best) BASIC21.62■■□□□ 1.05
CACNA1AO00555 IDH2-202ENST00000540499 1453 ntTSL 2 BASIC21.62■■□□□ 1.05
CACNA1AO00555 INS-202ENST00000381330 597 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
CACNA1AO00555 RNA5SP413-201ENST00000516373 109 ntBASIC21.62■■□□□ 1.05
CACNA1AO00555 KANSL1L-207ENST00000452086 2334 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
CACNA1AO00555 SNHG6-203ENST00000520944 638 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
CACNA1AO00555 AC073912.3-201ENST00000624414 853 ntBASIC21.61■■□□□ 1.05
CACNA1AO00555 GPI-201ENST00000356487 2210 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
CACNA1AO00555 EVA1C-203ENST00000401402 1558 ntTSL 5 BASIC21.61■■□□□ 1.05
CACNA1AO00555 AC092675.2-201ENST00000413274 541 ntTSL 4 BASIC21.61■■□□□ 1.05
CACNA1AO00555 AC008550.1-201ENST00000511500 884 ntBASIC21.61■■□□□ 1.05
CACNA1AO00555 AF201337.1-201ENST00000520239 748 ntBASIC21.61■■□□□ 1.05
CACNA1AO00555 IQCJ-SCHIP1-203ENST00000476809 1780 ntAPPRIS ALT2 TSL 5 BASIC21.61■■□□□ 1.05
CACNA1AO00555 TNFSF12-TNFSF13-201ENST00000293826 1816 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
CACNA1AO00555 PACRGL-208ENST00000503585 1582 ntAPPRIS P1 TSL 2 BASIC21.6■■□□□ 1.05
CACNA1AO00555 TRAPPC2L-213ENST00000567895 854 ntTSL 3 BASIC21.6■■□□□ 1.05
CACNA1AO00555 NGB-201ENST00000298352 1884 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
CACNA1AO00555 NR2F1-AS1-210ENST00000606739 1431 ntTSL 2 BASIC21.6■■□□□ 1.05
CACNA1AO00555 C8orf58-202ENST00000409586 2021 ntAPPRIS ALT2 TSL 2 BASIC21.6■■□□□ 1.05
CACNA1AO00555 EMX1-201ENST00000258106 2188 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
CACNA1AO00555 RAB24-201ENST00000303251 1311 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
CACNA1AO00555 FUS-202ENST00000380244 1818 ntAPPRIS ALT2 TSL 1 (best) BASIC21.6■■□□□ 1.05
CACNA1AO00555 AC007322.1-201ENST00000426983 750 ntBASIC21.6■■□□□ 1.05
CACNA1AO00555 AC021087.1-201ENST00000512642 522 ntTSL 2 BASIC21.6■■□□□ 1.05
CACNA1AO00555 AC089999.2-201ENST00000552525 248 ntTSL 3 BASIC21.6■■□□□ 1.05
CACNA1AO00555 GNB2-203ENST00000393926 1641 ntAPPRIS P1 TSL 5 BASIC21.6■■□□□ 1.05
CACNA1AO00555 RAB28-203ENST00000338176 1787 ntTSL 3 BASIC21.6■■□□□ 1.05
CACNA1AO00555 RNF166-201ENST00000312838 1883 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
CACNA1AO00555 POLD2-218ENST00000610533 1619 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
CACNA1AO00555 NRG2-203ENST00000340391 1944 ntTSL 5 BASIC21.59■■□□□ 1.05
CACNA1AO00555 MTHFD1L-201ENST00000367307 1049 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
CACNA1AO00555 DUX4L16-201ENST00000555130 1264 ntBASIC21.59■■□□□ 1.05
CACNA1AO00555 IFNL4-201ENST00000606380 1637 ntAPPRIS P5 TSL 1 (best) BASIC21.59■■□□□ 1.05
CACNA1AO00555 FBRSL1-201ENST00000434748 5568 ntAPPRIS P2 TSL 1 (best) BASIC21.59■■□□□ 1.05
CACNA1AO00555 COA6-202ENST00000366613 641 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
CACNA1AO00555 AC211429.1-201ENST00000415277 523 ntBASIC21.59■■□□□ 1.05
CACNA1AO00555 ARL5A-202ENST00000428992 747 ntTSL 2 BASIC21.59■■□□□ 1.05
CACNA1AO00555 ITGA9-AS1-210ENST00000457661 738 ntTSL 4 BASIC21.59■■□□□ 1.05
CACNA1AO00555 FBXL6-201ENST00000331890 1785 ntAPPRIS P3 TSL 1 (best) BASIC21.58■■□□□ 1.05
CACNA1AO00555 C14orf80-204ENST00000392522 1630 ntAPPRIS P4 TSL 5 BASIC21.58■■□□□ 1.05
CACNA1AO00555 RCCD1-203ENST00000555155 1871 ntAPPRIS ALT1 TSL 5 BASIC21.58■■□□□ 1.05
CACNA1AO00555 MTMR14-206ENST00000420925 1427 ntAPPRIS ALT2 TSL 2 BASIC21.58■■□□□ 1.05
CACNA1AO00555 MFF-208ENST00000409616 1247 ntTSL 5 BASIC21.58■■□□□ 1.05
CACNA1AO00555 LRRK1-208ENST00000532029 1241 ntTSL 1 (best) BASIC21.58■■□□□ 1.05
CACNA1AO00555 GALNS-211ENST00000568311 703 ntTSL 1 (best) BASIC21.58■■□□□ 1.05
CACNA1AO00555 DEDD2-205ENST00000596251 1183 ntAPPRIS P3 TSL 1 (best) BASIC21.58■■□□□ 1.05
CACNA1AO00555 SNUPN-201ENST00000308588 1513 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
CACNA1AO00555 GMPPA-201ENST00000313597 1544 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
CACNA1AO00555 C12orf42-208ENST00000548883 1336 ntAPPRIS P2 TSL 1 (best) BASIC21.58■■□□□ 1.04
CACNA1AO00555 TMEM54-202ENST00000373463 999 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.04
CACNA1AO00555 FAM163B-202ENST00000496132 811 ntAPPRIS P1 TSL 3 BASIC21.58■■□□□ 1.04
CACNA1AO00555 BNIP3L-204ENST00000520409 739 ntTSL 2 BASIC21.58■■□□□ 1.04
CACNA1AO00555 SMIM1-203ENST00000561886 491 ntTSL 2 BASIC21.58■■□□□ 1.04
CACNA1AO00555 FAM32A-205ENST00000589852 1168 ntTSL 1 (best) BASIC21.58■■□□□ 1.04
CACNA1AO00555 HSDL1-202ENST00000434463 1493 ntTSL 2 BASIC21.58■■□□□ 1.04
CACNA1AO00555 CDH23-208ENST00000461841 2000 ntTSL 5 BASIC21.57■■□□□ 1.04
CACNA1AO00555 INS-203ENST00000397262 639 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
CACNA1AO00555 CLK2-201ENST00000355560 2120 ntAPPRIS ALT1 TSL 5 BASIC21.57■■□□□ 1.04
CACNA1AO00555 WTAP-206ENST00000621533 2109 ntAPPRIS P1 TSL 2 BASIC21.57■■□□□ 1.04
CACNA1AO00555 CBR1-201ENST00000290349 1293 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
CACNA1AO00555 EIF3J-AS1-205ENST00000560750 1093 ntTSL 3 BASIC21.57■■□□□ 1.04
CACNA1AO00555 GATA1-202ENST00000376670 1497 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
CACNA1AO00555 METTL21A-210ENST00000458426 1366 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
CACNA1AO00555 PPCS-202ENST00000372560 793 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
CACNA1AO00555 VKORC1-204ENST00000394971 664 ntTSL 5 BASIC21.56■■□□□ 1.04
CACNA1AO00555 CXADR-204ENST00000400166 1080 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
CACNA1AO00555 LINC01117-201ENST00000443670 699 ntTSL 5 BASIC21.56■■□□□ 1.04
CACNA1AO00555 MNX1-AS1-201ENST00000480284 1041 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
CACNA1AO00555 BX649632.1-201ENST00000610187 819 ntTSL 3 BASIC21.56■■□□□ 1.04
CACNA1AO00555 PRKAR1B-203ENST00000403562 1917 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
CACNA1AO00555 TSPAN4-202ENST00000397396 1332 ntTSL 5 BASIC21.55■■□□□ 1.04
CACNA1AO00555 CERKL-204ENST00000374970 1392 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
CACNA1AO00555 GXYLT1P3-201ENST00000453058 1193 ntBASIC21.55■■□□□ 1.04
CACNA1AO00555 SMIM20-205ENST00000614775 1190 ntTSL 5 BASIC21.55■■□□□ 1.04
CACNA1AO00555 LENG1-201ENST00000222224 1542 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
CACNA1AO00555 RAMP1-203ENST00000404910 857 ntTSL 2 BASIC21.55■■□□□ 1.04
CACNA1AO00555 BX890604.1-207ENST00000486571 904 ntTSL 5 BASIC21.55■■□□□ 1.04
CACNA1AO00555 COL13A1-210ENST00000517713 2007 ntAPPRIS ALT2 TSL 5 BASIC21.55■■□□□ 1.04
CACNA1AO00555 AC142472.1-201ENST00000612013 1741 ntBASIC21.55■■□□□ 1.04
CACNA1AO00555 SNRNP70-201ENST00000221448 1603 ntTSL 2 BASIC21.54■■□□□ 1.04
CACNA1AO00555 CCNE1-201ENST00000262643 2043 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
CACNA1AO00555 TIGD3-201ENST00000309880 2012 ntAPPRIS P1 TSL 2 BASIC21.54■■□□□ 1.04
CACNA1AO00555 FNDC3B-204ENST00000421757 946 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
CACNA1AO00555 AP002748.1-201ENST00000504911 580 ntTSL 3 BASIC21.54■■□□□ 1.04
CACNA1AO00555 SCARA5-203ENST00000518030 1074 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
CACNA1AO00555 SNAP23-210ENST00000564153 775 ntTSL 2 BASIC21.54■■□□□ 1.04
CACNA1AO00555 SERBP1-202ENST00000370990 1621 ntAPPRIS ALT2 TSL 1 (best) BASIC21.54■■□□□ 1.04
CACNA1AO00555 IRF3-207ENST00000593922 1494 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
CACNA1AO00555 SEC61A2-206ENST00000379051 707 ntTSL 3 BASIC21.54■■□□□ 1.04
CACNA1AO00555 UNC93B4-201ENST00000505679 747 ntBASIC21.54■■□□□ 1.04
Retrieved 100 of 98,524 protein–RNA pairs in 22.4 ms