Protein–RNA interactions for Protein: A0A0B4J244

TRAV3, T-cell receptor alpha variable 3 (gene/pseudogene) (Fragment), humanhuman

Predictions only

Length 114 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV3A0A0B4J244 H2AFY2-201ENST00000373255 1980 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
TRAV3A0A0B4J244 AL117348.2-201ENST00000432920 1625 ntAPPRIS P1 TSL 2 BASIC18.03■□□□□ 0.48
TRAV3A0A0B4J244 SEC11C-204ENST00000587834 1202 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
TRAV3A0A0B4J244 CRLF1-201ENST00000392386 1792 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
TRAV3A0A0B4J244 AP006623.1-201ENST00000506172 2061 ntTSL 5 BASIC18.03■□□□□ 0.48
TRAV3A0A0B4J244 ACTL10-201ENST00000330271 2028 ntAPPRIS P1 BASIC18.03■□□□□ 0.48
TRAV3A0A0B4J244 PDIA2-201ENST00000219406 1698 ntAPPRIS P2 TSL 1 (best) BASIC18.03■□□□□ 0.48
TRAV3A0A0B4J244 HNRNPD-202ENST00000352301 1667 ntAPPRIS ALT1 TSL 1 (best) BASIC18.03■□□□□ 0.48
TRAV3A0A0B4J244 ADGRB1-202ENST00000517894 6241 ntAPPRIS P1 TSL 5 BASIC18.02■□□□□ 0.48
TRAV3A0A0B4J244 SLC25A1-201ENST00000215882 1648 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
TRAV3A0A0B4J244 ZC3H14-219ENST00000556945 2075 ntTSL 5 BASIC18.02■□□□□ 0.48
TRAV3A0A0B4J244 NKX2-8-201ENST00000258829 1261 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
TRAV3A0A0B4J244 H2AFY-217ENST00000511689 2789 ntAPPRIS P4 TSL 1 (best) BASIC18.02■□□□□ 0.48
TRAV3A0A0B4J244 NAT8L-202ENST00000423729 5870 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
TRAV3A0A0B4J244 CLDN5-203ENST00000413119 1760 ntTSL 2 BASIC18.02■□□□□ 0.47
TRAV3A0A0B4J244 FAIM-201ENST00000338446 1622 ntTSL 5 BASIC18.01■□□□□ 0.47
TRAV3A0A0B4J244 HTRA2-202ENST00000352222 1450 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
TRAV3A0A0B4J244 ZNF444-201ENST00000337080 2042 ntAPPRIS P3 TSL 1 (best) BASIC18.01■□□□□ 0.47
TRAV3A0A0B4J244 LSR-202ENST00000354900 2105 ntAPPRIS ALT2 TSL 1 (best) BASIC18.01■□□□□ 0.47
TRAV3A0A0B4J244 PNMA6A-201ENST00000421798 2209 ntAPPRIS P1 TSL 2 BASIC18.01■□□□□ 0.47
TRAV3A0A0B4J244 CD63-201ENST00000257857 1070 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
TRAV3A0A0B4J244 AC103724.3-201ENST00000564481 992 ntBASIC18.01■□□□□ 0.47
TRAV3A0A0B4J244 AC064853.4-201ENST00000641394 363 ntAPPRIS P1 BASIC18.01■□□□□ 0.47
TRAV3A0A0B4J244 DLL3-202ENST00000356433 2055 ntAPPRIS P1 TSL 2 BASIC18.01■□□□□ 0.47
TRAV3A0A0B4J244 HIRA-201ENST00000263208 4053 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
TRAV3A0A0B4J244 LINC00565-201ENST00000562710 2331 ntBASIC18.01■□□□□ 0.47
TRAV3A0A0B4J244 AL353803.4-201ENST00000565882 1934 ntBASIC18.01■□□□□ 0.47
TRAV3A0A0B4J244 SPG21-202ENST00000416889 1533 ntTSL 2 BASIC18.01■□□□□ 0.47
TRAV3A0A0B4J244 CADM1-201ENST00000331581 1766 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
TRAV3A0A0B4J244 GAL3ST1-202ENST00000401975 1791 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
TRAV3A0A0B4J244 NKX6-3-201ENST00000518699 1352 ntAPPRIS P1 TSL 5 BASIC18.01■□□□□ 0.47
TRAV3A0A0B4J244 SEPT8-207ENST00000378719 2889 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
TRAV3A0A0B4J244 VGLL2-201ENST00000326274 2212 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
TRAV3A0A0B4J244 MZT2B-201ENST00000281871 933 ntAPPRIS P3 TSL 1 (best) BASIC18■□□□□ 0.47
TRAV3A0A0B4J244 MZT2A-201ENST00000309451 624 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
TRAV3A0A0B4J244 LRRC1-201ENST00000370882 808 ntTSL 3 BASIC18■□□□□ 0.47
TRAV3A0A0B4J244 LINC01770-201ENST00000417917 634 ntTSL 2 BASIC18■□□□□ 0.47
TRAV3A0A0B4J244 KCTD5-202ENST00000564195 774 ntTSL 5 BASIC18■□□□□ 0.47
TRAV3A0A0B4J244 SNX5-217ENST00000606557 1087 ntBASIC18■□□□□ 0.47
TRAV3A0A0B4J244 CACNG6-203ENST00000352529 1635 ntTSL 5 BASIC18■□□□□ 0.47
TRAV3A0A0B4J244 RNF39-201ENST00000244360 2206 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
TRAV3A0A0B4J244 SYT6-209ENST00000610222 1707 ntAPPRIS P1 TSL 5 BASIC18■□□□□ 0.47
TRAV3A0A0B4J244 CPE-201ENST00000402744 2421 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
TRAV3A0A0B4J244 NFKBID-201ENST00000396901 1834 ntAPPRIS P2 TSL 1 (best) BASIC18■□□□□ 0.47
TRAV3A0A0B4J244 FAM129C-211ENST00000600871 1822 ntAPPRIS ALT2 TSL 5 BASIC18■□□□□ 0.47
TRAV3A0A0B4J244 NFKBID-211ENST00000641389 1834 ntAPPRIS ALT2 BASIC18■□□□□ 0.47
TRAV3A0A0B4J244 C7orf49-203ENST00000430372 1579 ntTSL 5 BASIC18■□□□□ 0.47
TRAV3A0A0B4J244 UROS-204ENST00000368797 1313 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
TRAV3A0A0B4J244 ZNF428-201ENST00000300811 1412 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
TRAV3A0A0B4J244 CACYBP-201ENST00000367679 2766 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
TRAV3A0A0B4J244 LSR-203ENST00000360798 1963 ntTSL 2 BASIC17.99■□□□□ 0.47
TRAV3A0A0B4J244 SHMT1-202ENST00000352886 2437 ntTSL 2 BASIC17.99■□□□□ 0.47
TRAV3A0A0B4J244 MSL1-203ENST00000577454 2081 ntTSL 2 BASIC17.99■□□□□ 0.47
TRAV3A0A0B4J244 LTB4R-201ENST00000345363 1616 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
TRAV3A0A0B4J244 C1QTNF12-201ENST00000330388 1036 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
TRAV3A0A0B4J244 CNPY3-202ENST00000394142 954 ntTSL 5 BASIC17.99■□□□□ 0.47
TRAV3A0A0B4J244 KRTAP5-5-201ENST00000399676 933 ntAPPRIS P1 BASIC17.99■□□□□ 0.47
TRAV3A0A0B4J244 PKNOX2-AS1-201ENST00000532316 586 ntTSL 3 BASIC17.99■□□□□ 0.47
TRAV3A0A0B4J244 LSM7-203ENST00000585409 512 ntTSL 2 BASIC17.99■□□□□ 0.47
TRAV3A0A0B4J244 NEUROG3-201ENST00000242462 1376 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
TRAV3A0A0B4J244 KCNIP1-201ENST00000328939 2014 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
TRAV3A0A0B4J244 ARIH2OS-201ENST00000408959 1598 ntAPPRIS P1 BASIC17.99■□□□□ 0.47
TRAV3A0A0B4J244 LINC00526-201ENST00000581067 1875 ntBASIC17.99■□□□□ 0.47
TRAV3A0A0B4J244 C19orf68-201ENST00000328759 2277 ntAPPRIS ALT2 TSL 1 (best) BASIC17.98■□□□□ 0.47
TRAV3A0A0B4J244 CDIPT-201ENST00000219789 2353 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
TRAV3A0A0B4J244 PAXBP1-201ENST00000290178 2564 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
TRAV3A0A0B4J244 NELFCD-213ENST00000602795 2305 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
TRAV3A0A0B4J244 BRI3-201ENST00000297290 780 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
TRAV3A0A0B4J244 MCRIP1-202ENST00000457257 942 ntTSL 3 BASIC17.98■□□□□ 0.47
TRAV3A0A0B4J244 AC053527.1-201ENST00000502790 685 ntTSL 3 BASIC17.98■□□□□ 0.47
TRAV3A0A0B4J244 TMEM170A-206ENST00000569276 609 ntTSL 2 BASIC17.98■□□□□ 0.47
TRAV3A0A0B4J244 MRGPRF-AS1-203ENST00000569432 542 ntTSL 4 BASIC17.98■□□□□ 0.47
TRAV3A0A0B4J244 AC119427.1-201ENST00000633182 556 ntTSL 4 BASIC17.98■□□□□ 0.47
TRAV3A0A0B4J244 AL590094.1-201ENST00000635581 706 ntTSL 2 BASIC17.98■□□□□ 0.47
TRAV3A0A0B4J244 SLC12A2-201ENST00000262461 6885 ntAPPRIS P3 TSL 1 (best) BASIC17.98■□□□□ 0.47
TRAV3A0A0B4J244 ZC3H14-223ENST00000557607 1983 ntTSL 5 BASIC17.98■□□□□ 0.47
TRAV3A0A0B4J244 NBL1-202ENST00000375136 2172 ntAPPRIS P3 TSL 1 (best) BASIC17.98■□□□□ 0.47
TRAV3A0A0B4J244 STEAP2-204ENST00000394626 2456 ntTSL 2 BASIC17.98■□□□□ 0.47
TRAV3A0A0B4J244 RAB11FIP3-201ENST00000262305 4831 ntAPPRIS P2 TSL 1 (best) BASIC17.98■□□□□ 0.47
TRAV3A0A0B4J244 NIPSNAP2-205ENST00000446778 1882 ntTSL 2 BASIC17.97■□□□□ 0.47
TRAV3A0A0B4J244 CREB3L3-205ENST00000602257 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC17.97■□□□□ 0.47
TRAV3A0A0B4J244 P4HA2-202ENST00000360568 2313 ntAPPRIS ALT1 TSL 1 (best) BASIC17.97■□□□□ 0.47
TRAV3A0A0B4J244 REST-206ENST00000612429 1376 ntTSL 5 BASIC17.97■□□□□ 0.47
TRAV3A0A0B4J244 REST-207ENST00000616975 1370 ntTSL 5 BASIC17.97■□□□□ 0.47
TRAV3A0A0B4J244 REST-212ENST00000640343 1352 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
TRAV3A0A0B4J244 YBX1P4-201ENST00000392794 808 ntBASIC17.97■□□□□ 0.47
TRAV3A0A0B4J244 HNRNPUL1-221ENST00000617305 1018 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
TRAV3A0A0B4J244 TRAM2-AS1-204ENST00000606714 2453 ntTSL 2 BASIC17.97■□□□□ 0.47
TRAV3A0A0B4J244 PCSK6-220ENST00000622483 3132 ntAPPRIS ALT2 TSL 1 (best) BASIC17.97■□□□□ 0.47
TRAV3A0A0B4J244 BX088645.1-201ENST00000636699 1728 ntAPPRIS P1 TSL 5 BASIC17.97■□□□□ 0.47
TRAV3A0A0B4J244 NRSN1-204ENST00000378491 2354 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
TRAV3A0A0B4J244 CLDN5-201ENST00000403084 2357 ntBASIC17.97■□□□□ 0.47
TRAV3A0A0B4J244 NIPA2-203ENST00000398013 2280 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
TRAV3A0A0B4J244 GPSM1-204ENST00000429455 2057 ntTSL 3 BASIC17.97■□□□□ 0.47
TRAV3A0A0B4J244 TMEM179-204ENST00000556573 1430 ntAPPRIS P1 TSL 3 BASIC17.97■□□□□ 0.47
TRAV3A0A0B4J244 IDI1-201ENST00000381344 2301 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
TRAV3A0A0B4J244 CDC20-202ENST00000372462 1777 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
TRAV3A0A0B4J244 IRX2-202ENST00000382611 2630 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
TRAV3A0A0B4J244 STMN4-201ENST00000265770 1250 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
TRAV3A0A0B4J244 VSTM2L-201ENST00000373459 831 ntTSL 3 BASIC17.96■□□□□ 0.47
Retrieved 100 of 98,524 protein–RNA pairs in 16.3 ms