Protein–RNA interactions for Protein: Q8NCR9

CLRN3, Clarin-3, humanhuman

Predictions only

Length 226 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN3Q8NCR9 MBD2-201ENST00000256429 5188 ntAPPRIS P1 TSL 1 (best) BASIC22.47■■□□□ 1.19
CLRN3Q8NCR9 YAP1-204ENST00000526343 2393 ntTSL 5 BASIC22.47■■□□□ 1.19
CLRN3Q8NCR9 ANKRD13D-211ENST00000511455 2139 ntAPPRIS P1 TSL 1 (best) BASIC22.46■■□□□ 1.19
CLRN3Q8NCR9 KCNK3-202ENST00000620977 1956 ntTSL 1 (best) BASIC22.46■■□□□ 1.19
CLRN3Q8NCR9 AKR1E2-201ENST00000298375 1566 ntAPPRIS P1 TSL 1 (best) BASIC22.44■■□□□ 1.18
CLRN3Q8NCR9 AGAP1-202ENST00000336665 5427 ntAPPRIS P3 TSL 1 (best) BASIC22.43■■□□□ 1.18
CLRN3Q8NCR9 FGFRL1-205ENST00000510644 2304 ntAPPRIS P1 TSL 1 (best) BASIC22.42■■□□□ 1.18
CLRN3Q8NCR9 CAPN10-208ENST00000404753 2570 ntAPPRIS ALT2 TSL 5 BASIC22.42■■□□□ 1.18
CLRN3Q8NCR9 DEAF1-201ENST00000382409 2500 ntAPPRIS P1 TSL 1 (best) BASIC22.41■■□□□ 1.18
CLRN3Q8NCR9 ADRA2C-201ENST00000330055 2129 ntAPPRIS P1 BASIC22.4■■□□□ 1.18
CLRN3Q8NCR9 BTBD7-201ENST00000298896 2621 ntTSL 1 (best) BASIC22.39■■□□□ 1.18
CLRN3Q8NCR9 ABL1-201ENST00000318560 5766 ntTSL 1 (best) BASIC22.38■■□□□ 1.17
CLRN3Q8NCR9 MBOAT7-202ENST00000338624 2076 ntTSL 2 BASIC22.38■■□□□ 1.17
CLRN3Q8NCR9 TCFL5-201ENST00000217162 2453 ntAPPRIS ALT2 TSL 1 (best) BASIC22.38■■□□□ 1.17
CLRN3Q8NCR9 TCFL5-202ENST00000335351 2456 ntAPPRIS P2 TSL 1 (best) BASIC22.38■■□□□ 1.17
CLRN3Q8NCR9 SCARA3-202ENST00000337221 1910 ntTSL 1 (best) BASIC22.38■■□□□ 1.17
CLRN3Q8NCR9 ZNF276-202ENST00000443381 2267 ntAPPRIS P1 TSL 1 (best) BASIC22.37■■□□□ 1.17
CLRN3Q8NCR9 KIAA1456-206ENST00000528753 2392 ntTSL 2 BASIC22.34■■□□□ 1.17
CLRN3Q8NCR9 AGAP3-216ENST00000479901 1881 ntTSL 5 BASIC22.34■■□□□ 1.17
CLRN3Q8NCR9 C11orf80-204ENST00000525908 2135 ntAPPRIS P3 TSL 2 BASIC22.31■■□□□ 1.16
CLRN3Q8NCR9 KCNJ4-201ENST00000303592 2065 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
CLRN3Q8NCR9 PPP1CA-203ENST00000376745 1476 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
CLRN3Q8NCR9 FTCD-204ENST00000397748 1955 ntTSL 1 (best) BASIC22.29■■□□□ 1.16
CLRN3Q8NCR9 CIC-201ENST00000160740 6111 ntAPPRIS ALT1 TSL 5 BASIC22.29■■□□□ 1.16
CLRN3Q8NCR9 PWWP2B-202ENST00000631148 2013 ntTSL 5 BASIC22.29■■□□□ 1.16
CLRN3Q8NCR9 PAPD7-201ENST00000230859 5459 ntTSL 1 (best) BASIC22.27■■□□□ 1.15
CLRN3Q8NCR9 PICK1-201ENST00000356976 2055 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
CLRN3Q8NCR9 MNX1-201ENST00000252971 2174 ntAPPRIS P3 TSL 1 (best) BASIC22.26■■□□□ 1.15
CLRN3Q8NCR9 PQLC1-203ENST00000397778 2555 ntAPPRIS P3 TSL 1 (best) BASIC22.26■■□□□ 1.15
CLRN3Q8NCR9 KCNK1-202ENST00000366621 2161 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
CLRN3Q8NCR9 C9orf40-201ENST00000376854 2327 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
CLRN3Q8NCR9 FAAH-201ENST00000243167 2094 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
CLRN3Q8NCR9 RAB40C-201ENST00000248139 2699 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
CLRN3Q8NCR9 IL1R1-201ENST00000409288 1735 ntTSL 5 BASIC22.21■■□□□ 1.15
CLRN3Q8NCR9 CCM2-201ENST00000258781 1894 ntAPPRIS P3 TSL 1 (best) BASIC22.21■■□□□ 1.15
CLRN3Q8NCR9 TMEM9-201ENST00000367330 1959 ntAPPRIS P3 TSL 1 (best) BASIC22.21■■□□□ 1.15
CLRN3Q8NCR9 CSNK1E-203ENST00000396832 2791 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.15
CLRN3Q8NCR9 GATA3-AS1-201ENST00000355358 2214 ntTSL 2 BASIC22.21■■□□□ 1.15
CLRN3Q8NCR9 NT5DC2-202ENST00000422318 1795 ntAPPRIS ALT2 TSL 5 BASIC22.2■■□□□ 1.14
CLRN3Q8NCR9 SFRP5-201ENST00000266066 1836 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
CLRN3Q8NCR9 LMO2-201ENST00000257818 2294 ntTSL 1 (best) BASIC22.18■■□□□ 1.14
CLRN3Q8NCR9 TPRA1-209ENST00000489960 1903 ntAPPRIS P1 TSL 5 BASIC22.18■■□□□ 1.14
CLRN3Q8NCR9 ATRNL1-209ENST00000609571 1818 ntTSL 1 (best) BASIC22.18■■□□□ 1.14
CLRN3Q8NCR9 KCTD17-201ENST00000402077 1691 ntAPPRIS P3 TSL 1 (best) BASIC22.18■■□□□ 1.14
CLRN3Q8NCR9 ZFYVE21-201ENST00000216602 1521 ntAPPRIS ALT2 TSL 2 BASIC22.18■■□□□ 1.14
CLRN3Q8NCR9 NPB-202ENST00000573081 2154 ntAPPRIS ALT2 BASIC22.18■■□□□ 1.14
CLRN3Q8NCR9 ESRRA-203ENST00000406310 2218 ntAPPRIS ALT1 TSL 1 (best) BASIC22.17■■□□□ 1.14
CLRN3Q8NCR9 FMR1-219ENST00000621453 1864 ntTSL 1 (best) BASIC22.16■■□□□ 1.14
CLRN3Q8NCR9 FEZF2-203ENST00000486811 2001 ntAPPRIS P1 TSL 5 BASIC22.16■■□□□ 1.14
CLRN3Q8NCR9 THAP4-204ENST00000407315 2367 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
CLRN3Q8NCR9 HECA-201ENST00000367658 5614 ntAPPRIS P1 TSL 1 (best) BASIC22.15■■□□□ 1.14
CLRN3Q8NCR9 ITGA9-203ENST00000422441 2282 ntTSL 1 (best) BASIC22.15■■□□□ 1.14
CLRN3Q8NCR9 ECHS1-201ENST00000368547 1617 ntAPPRIS P1 TSL 1 (best) BASIC22.14■■□□□ 1.14
CLRN3Q8NCR9 ARHGEF7-206ENST00000375741 5525 ntTSL 1 (best) BASIC22.14■■□□□ 1.13
CLRN3Q8NCR9 RCC1L-202ENST00000614461 2419 ntTSL 1 (best) BASIC22.14■■□□□ 1.13
CLRN3Q8NCR9 FSD1L-204ENST00000469022 1836 ntTSL 1 (best) BASIC22.13■■□□□ 1.13
CLRN3Q8NCR9 PACS2-201ENST00000325438 3708 ntAPPRIS P1 TSL 1 (best) BASIC22.13■■□□□ 1.13
CLRN3Q8NCR9 JAG2-201ENST00000331782 5835 ntAPPRIS P1 TSL 1 (best) BASIC22.12■■□□□ 1.13
CLRN3Q8NCR9 OTUD5-203ENST00000396743 2682 ntAPPRIS ALT1 TSL 1 (best) BASIC22.12■■□□□ 1.13
CLRN3Q8NCR9 HOXB3-201ENST00000311626 2642 ntAPPRIS P1 TSL 1 (best) BASIC22.12■■□□□ 1.13
CLRN3Q8NCR9 CCZ1-201ENST00000325974 1802 ntAPPRIS P1 TSL 1 (best) BASIC22.12■■□□□ 1.13
CLRN3Q8NCR9 FOXG1-201ENST00000313071 4890 ntAPPRIS P1 BASIC22.11■■□□□ 1.13
CLRN3Q8NCR9 UCK1-201ENST00000372208 2063 ntTSL 1 (best) BASIC22.1■■□□□ 1.13
CLRN3Q8NCR9 HOOK2-201ENST00000264827 2603 ntAPPRIS P1 TSL 1 (best) BASIC22.09■■□□□ 1.13
CLRN3Q8NCR9 GABRA5-203ENST00000400081 2761 ntAPPRIS P1 TSL 5 BASIC22.08■■□□□ 1.13
CLRN3Q8NCR9 ARHGEF7-205ENST00000375739 5375 ntTSL 1 (best) BASIC22.07■■□□□ 1.12
CLRN3Q8NCR9 ST6GALNAC6-205ENST00000373146 2460 ntAPPRIS P3 TSL 1 (best) BASIC22.06■■□□□ 1.12
CLRN3Q8NCR9 VWA1-201ENST00000338660 2147 ntTSL 2 BASIC22.06■■□□□ 1.12
CLRN3Q8NCR9 CCND3-202ENST00000372988 2133 ntTSL 1 (best) BASIC22.06■■□□□ 1.12
CLRN3Q8NCR9 POU3F3-201ENST00000361360 3064 ntAPPRIS P1 BASIC22.06■■□□□ 1.12
CLRN3Q8NCR9 AC145285.7-201ENST00000614819 1539 ntBASIC22.05■■□□□ 1.12
CLRN3Q8NCR9 REXO4-202ENST00000371942 2360 ntAPPRIS P1 TSL 1 (best) BASIC22.04■■□□□ 1.12
CLRN3Q8NCR9 TMEM229A-201ENST00000455783 2108 ntAPPRIS P1 BASIC22.03■■□□□ 1.12
CLRN3Q8NCR9 SNTG2-201ENST00000308624 1888 ntAPPRIS P1 TSL 1 (best) BASIC22.03■■□□□ 1.12
CLRN3Q8NCR9 DHRS13-202ENST00000394901 2037 ntTSL 1 (best) BASIC22.02■■□□□ 1.12
CLRN3Q8NCR9 TLE6-201ENST00000246112 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC22■■□□□ 1.11
CLRN3Q8NCR9 ZNF787-203ENST00000610935 1925 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.11
CLRN3Q8NCR9 FTCD-203ENST00000397746 1878 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
CLRN3Q8NCR9 TPRA1-201ENST00000296210 1725 ntTSL 1 (best) BASIC21.98■■□□□ 1.11
CLRN3Q8NCR9 RDX-206ENST00000528900 1814 ntTSL 1 (best) BASIC21.98■■□□□ 1.11
CLRN3Q8NCR9 TSPOAP1-AS1-203ENST00000579527 2042 ntTSL 2 BASIC21.96■■□□□ 1.11
CLRN3Q8NCR9 TPM2-203ENST00000378292 2147 ntAPPRIS ALT1 TSL 1 (best) BASIC21.95■■□□□ 1.11
CLRN3Q8NCR9 SECTM1-201ENST00000269389 2235 ntAPPRIS P2 TSL 1 (best) BASIC21.95■■□□□ 1.1
CLRN3Q8NCR9 NOG-201ENST00000332822 1892 ntAPPRIS P1 BASIC21.94■■□□□ 1.1
CLRN3Q8NCR9 SKOR2-203ENST00000620245 3048 ntAPPRIS ALT2 TSL 5 BASIC21.94■■□□□ 1.1
CLRN3Q8NCR9 SHF-207ENST00000560540 2062 ntTSL 5 BASIC21.94■■□□□ 1.1
CLRN3Q8NCR9 ANGPTL6-201ENST00000253109 1900 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
CLRN3Q8NCR9 ELK4-201ENST00000289703 2118 ntTSL 1 (best) BASIC21.91■■□□□ 1.1
CLRN3Q8NCR9 CREM-210ENST00000374721 2020 ntTSL 5 BASIC21.9■■□□□ 1.1
CLRN3Q8NCR9 EMC10-202ENST00000376918 2014 ntAPPRIS ALT2 TSL 1 (best) BASIC21.9■■□□□ 1.1
CLRN3Q8NCR9 FAM57A-202ENST00000308278 2412 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
CLRN3Q8NCR9 AHSA2-201ENST00000357022 2437 ntTSL 1 (best) BASIC21.89■■□□□ 1.1
CLRN3Q8NCR9 RASGEF1C-207ENST00000615330 2268 ntTSL 5 BASIC21.89■■□□□ 1.09
CLRN3Q8NCR9 RCOR3-202ENST00000367006 2525 ntTSL 1 (best) BASIC21.88■■□□□ 1.09
CLRN3Q8NCR9 CGREF1-203ENST00000402394 1906 ntAPPRIS P2 TSL 2 BASIC21.88■■□□□ 1.09
CLRN3Q8NCR9 FEV-201ENST00000295727 1879 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
CLRN3Q8NCR9 DCBLD1-201ENST00000296955 1979 ntAPPRIS P2 TSL 1 (best) BASIC21.87■■□□□ 1.09
CLRN3Q8NCR9 GIPC1-203ENST00000393033 1926 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
CLRN3Q8NCR9 ZBTB12-201ENST00000375527 1875 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
CLRN3Q8NCR9 ADGRB2-204ENST00000398542 5176 ntTSL 5 BASIC21.87■■□□□ 1.09
Retrieved 100 of 98,524 protein–RNA pairs in 26.6 ms