Protein–RNA interactions for Protein: P33552

CKS2, Cyclin-dependent kinases regulatory subunit 2, humanhuman

Predictions only

Length 79 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CKS2P33552 KHDRBS3-201ENST00000355849 1977 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
CKS2P33552 MBOAT7-202ENST00000338624 2076 ntTSL 2 BASIC20.46■□□□□ 0.87
CKS2P33552 GLTP-201ENST00000318348 2356 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
CKS2P33552 MEX3D-201ENST00000402693 2850 ntAPPRIS P2 TSL 1 (best) BASIC20.45■□□□□ 0.86
CKS2P33552 FBXO45-201ENST00000311630 5899 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
CKS2P33552 ANXA5-201ENST00000296511 1762 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
CKS2P33552 TMEM229A-201ENST00000455783 2108 ntAPPRIS P1 BASIC20.44■□□□□ 0.86
CKS2P33552 HOXD13-201ENST00000392539 2240 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
CKS2P33552 ST6GALNAC6-203ENST00000373142 2448 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
CKS2P33552 RAB43-207ENST00000476465 1627 ntTSL 3 BASIC20.42■□□□□ 0.86
CKS2P33552 RNF126-201ENST00000292363 1694 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
CKS2P33552 EFNA1-202ENST00000368407 1926 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
CKS2P33552 PPP1R1A-201ENST00000257905 1826 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
CKS2P33552 ADRA2C-202ENST00000509482 1600 ntTSL 3 BASIC20.38■□□□□ 0.85
CKS2P33552 FOXA2-202ENST00000419308 2422 ntAPPRIS ALT2 TSL 1 (best) BASIC20.38■□□□□ 0.85
CKS2P33552 MAPK13-201ENST00000211287 2052 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
CKS2P33552 MATK-201ENST00000310132 2133 ntAPPRIS ALT2 TSL 1 (best) BASIC20.35■□□□□ 0.85
CKS2P33552 VPS37D-201ENST00000324941 1624 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
CKS2P33552 LIMCH1-211ENST00000509638 1570 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
CKS2P33552 PPP2CB-204ENST00000518564 691 ntTSL 3 BASIC20.34■□□□□ 0.85
CKS2P33552 BRF1-213ENST00000548421 1452 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
CKS2P33552 BRF1-221ENST00000619151 1530 ntTSL 5 BASIC20.33■□□□□ 0.85
CKS2P33552 ABCB10P1-201ENST00000614297 2181 ntBASIC20.32■□□□□ 0.84
CKS2P33552 FTCD-203ENST00000397746 1878 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
CKS2P33552 FTCD-204ENST00000397748 1955 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
CKS2P33552 RCC1L-201ENST00000610322 2300 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
CKS2P33552 RRAGC-201ENST00000373001 2732 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
CKS2P33552 RNF215-203ENST00000382363 1992 ntAPPRIS P2 TSL 1 (best) BASIC20.28■□□□□ 0.84
CKS2P33552 FSD1L-204ENST00000469022 1836 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
CKS2P33552 PCYT2-203ENST00000538936 5147 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
CKS2P33552 EXOC3-209ENST00000512944 2825 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
CKS2P33552 ANGPTL6-204ENST00000592641 1781 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
CKS2P33552 ELK4-201ENST00000289703 2118 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
CKS2P33552 BCL7B-201ENST00000223368 1975 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
CKS2P33552 TPI1-201ENST00000229270 1763 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
CKS2P33552 AL136373.1-201ENST00000634804 1449 ntAPPRIS P1 BASIC20.25■□□□□ 0.83
CKS2P33552 GATA6-202ENST00000581694 2057 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
CKS2P33552 ANKRD13D-211ENST00000511455 2139 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
CKS2P33552 FAM19A5-203ENST00000402357 1508 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
CKS2P33552 AGAP3-216ENST00000479901 1881 ntTSL 5 BASIC20.24■□□□□ 0.83
CKS2P33552 IFFO2-203ENST00000455833 6188 ntAPPRIS P1 TSL 5 BASIC20.23■□□□□ 0.83
CKS2P33552 NIT1-201ENST00000368007 1749 ntTSL 2 BASIC20.23■□□□□ 0.83
CKS2P33552 ABCB10P3-201ENST00000561950 2166 ntBASIC20.23■□□□□ 0.83
CKS2P33552 MSRB2-201ENST00000376510 1803 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
CKS2P33552 CUEDC1-201ENST00000360238 2193 ntAPPRIS P1 TSL 2 BASIC20.22■□□□□ 0.83
CKS2P33552 NGB-201ENST00000298352 1884 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
CKS2P33552 CCZ1B-215ENST00000626257 2211 ntTSL 2 BASIC20.22■□□□□ 0.83
CKS2P33552 CYP26C1-201ENST00000285949 1569 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
CKS2P33552 CCND3-203ENST00000372991 2085 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
CKS2P33552 ZBTB12-201ENST00000375527 1875 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
CKS2P33552 EXOC3L4-201ENST00000380069 2293 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
CKS2P33552 PQLC1-202ENST00000357575 2475 ntAPPRIS ALT1 TSL 5 BASIC20.18■□□□□ 0.82
CKS2P33552 CHSY1-201ENST00000254190 4550 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
CKS2P33552 RTN2-201ENST00000245923 2293 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
CKS2P33552 TESK1-206ENST00000620767 2438 ntAPPRIS P1 TSL 5 BASIC20.16■□□□□ 0.82
CKS2P33552 TPRA1-201ENST00000296210 1725 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
CKS2P33552 RNF130-205ENST00000521389 2263 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
CKS2P33552 FGFRL1-205ENST00000510644 2304 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
CKS2P33552 DLG3-203ENST00000374360 5905 ntAPPRIS P2 TSL 1 (best) BASIC20.15■□□□□ 0.82
CKS2P33552 BIN1-204ENST00000348750 2074 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
CKS2P33552 CAPNS1-201ENST00000246533 1918 ntAPPRIS P2 TSL 1 (best) BASIC20.14■□□□□ 0.81
CKS2P33552 SHF-206ENST00000560471 2499 ntTSL 5 BASIC20.14■□□□□ 0.81
CKS2P33552 OSBP-201ENST00000263847 5083 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
CKS2P33552 TPM2-203ENST00000378292 2147 ntAPPRIS ALT1 TSL 1 (best) BASIC20.13■□□□□ 0.81
CKS2P33552 ANGPTL6-201ENST00000253109 1900 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
CKS2P33552 KLHL35-204ENST00000539798 1936 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
CKS2P33552 EPB41L4B-202ENST00000374566 5800 ntAPPRIS P4 TSL 1 (best) BASIC20.11■□□□□ 0.81
CKS2P33552 UCK1-201ENST00000372208 2063 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
CKS2P33552 GNB5-202ENST00000358784 1735 ntAPPRIS ALT1 TSL 1 (best) BASIC20.1■□□□□ 0.81
CKS2P33552 AL161658.1-201ENST00000623641 1967 ntBASIC20.09■□□□□ 0.81
CKS2P33552 ZIC2-201ENST00000376335 2983 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
CKS2P33552 ARL8A-204ENST00000614750 1727 ntTSL 3 BASIC20.07■□□□□ 0.8
CKS2P33552 TPRA1-202ENST00000355552 1933 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
CKS2P33552 COL13A1-212ENST00000520133 1833 ntTSL 5 BASIC20.06■□□□□ 0.8
CKS2P33552 RCC1L-202ENST00000614461 2419 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
CKS2P33552 PANK2-207ENST00000610179 1807 ntAPPRIS ALT2 TSL 1 (best) BASIC20.06■□□□□ 0.8
CKS2P33552 DRD4-201ENST00000176183 1375 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
CKS2P33552 CCM2-218ENST00000541586 1719 ntTSL 3 BASIC20.05■□□□□ 0.8
CKS2P33552 ZSWIM6-201ENST00000252744 5501 ntAPPRIS P1 TSL 5 BASIC20.04■□□□□ 0.8
CKS2P33552 HOXB3-208ENST00000476342 1420 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
CKS2P33552 FZD2-201ENST00000315323 2112 ntAPPRIS P1 BASIC20.04■□□□□ 0.8
CKS2P33552 NEUROG2-201ENST00000313341 2287 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
CKS2P33552 MAPK12-201ENST00000215659 1918 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
CKS2P33552 ATRNL1-207ENST00000527407 1583 ntTSL 5 BASIC20.03■□□□□ 0.8
CKS2P33552 ZCCHC2-201ENST00000269499 5959 ntAPPRIS P2 TSL 5 BASIC20.03■□□□□ 0.8
CKS2P33552 FADS3-201ENST00000278829 1779 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
CKS2P33552 AC105285.1-201ENST00000500914 2036 ntTSL 1 (best) BASIC20■□□□□ 0.79
CKS2P33552 PPP1CC-202ENST00000340766 1472 ntTSL 2 BASIC20■□□□□ 0.79
CKS2P33552 LTB4R2-204ENST00000533293 1515 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
CKS2P33552 AC120057.4-201ENST00000624722 1615 ntBASIC19.99■□□□□ 0.79
CKS2P33552 DCBLD1-201ENST00000296955 1979 ntAPPRIS P2 TSL 1 (best) BASIC19.99■□□□□ 0.79
CKS2P33552 CGREF1-203ENST00000402394 1906 ntAPPRIS P2 TSL 2 BASIC19.98■□□□□ 0.79
CKS2P33552 ARPC5L-202ENST00000353214 2507 ntAPPRIS P1 TSL 2 BASIC19.97■□□□□ 0.79
CKS2P33552 AC139426.1-201ENST00000568218 2529 ntBASIC19.97■□□□□ 0.79
CKS2P33552 ARRDC1-201ENST00000371421 1586 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
CKS2P33552 TPRA1-209ENST00000489960 1903 ntAPPRIS P1 TSL 5 BASIC19.96■□□□□ 0.79
CKS2P33552 INO80B-201ENST00000233331 1261 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
CKS2P33552 GNPTAB-206ENST00000549940 1678 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
CKS2P33552 TRAPPC10-202ENST00000380221 1763 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
CKS2P33552 PCYT2-205ENST00000570391 1857 ntTSL 2 BASIC19.95■□□□□ 0.78
Retrieved 100 of 98,524 protein–RNA pairs in 18.5 ms