Protein–RNA interactions for Protein: O00555

CACNA1A, Voltage-dependent P/Q-type calcium channel subunit alpha-1A, humanhuman

Predictions only

Length 2,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CACNA1AO00555 HAGHL-204ENST00000549114 1820 ntTSL 5 BASIC27.93■■■□□ 2.06
CACNA1AO00555 NT5M-201ENST00000389022 1617 ntAPPRIS P1 TSL 1 (best) BASIC27.93■■■□□ 2.06
CACNA1AO00555 DRD4-201ENST00000176183 1375 ntAPPRIS P1 TSL 1 (best) BASIC27.93■■■□□ 2.06
CACNA1AO00555 PGAM5-201ENST00000317555 1182 ntTSL 1 (best) BASIC27.92■■■□□ 2.06
CACNA1AO00555 PCBD2-201ENST00000254908 1223 ntAPPRIS P1 TSL 1 (best) BASIC27.88■■■□□ 2.05
CACNA1AO00555 AC044849.2-201ENST00000606596 710 ntBASIC27.86■■■□□ 2.05
CACNA1AO00555 ECHS1-201ENST00000368547 1617 ntAPPRIS P1 TSL 1 (best) BASIC27.86■■■□□ 2.05
CACNA1AO00555 FAM185A-202ENST00000413034 1179 ntAPPRIS P4 TSL 5 BASIC27.85■■■□□ 2.05
CACNA1AO00555 NECTIN3-201ENST00000319792 1549 ntAPPRIS ALT2 TSL 1 (best) BASIC27.84■■■□□ 2.05
CACNA1AO00555 LGALS3-201ENST00000254301 1146 ntAPPRIS P1 TSL 1 (best) BASIC27.83■■■□□ 2.05
CACNA1AO00555 CAPNS1-206ENST00000588815 1471 ntAPPRIS P2 TSL 1 (best) BASIC27.83■■■□□ 2.04
CACNA1AO00555 ZNF706-207ENST00000519882 959 ntAPPRIS P1 TSL 3 BASIC27.82■■■□□ 2.04
CACNA1AO00555 ZNF706-213ENST00000521272 732 ntAPPRIS P1 TSL 5 BASIC27.82■■■□□ 2.04
CACNA1AO00555 MTMR1-214ENST00000542156 1227 ntTSL 1 (best) BASIC27.82■■■□□ 2.04
CACNA1AO00555 AC104109.3-201ENST00000519718 483 ntAPPRIS P1 TSL 5 BASIC27.82■■■□□ 2.04
CACNA1AO00555 HSD17B1P1-201ENST00000590052 955 ntBASIC27.81■■■□□ 2.04
CACNA1AO00555 ARHGDIG-201ENST00000219409 949 ntAPPRIS P1 TSL 1 (best) BASIC27.8■■■□□ 2.04
CACNA1AO00555 RP9-201ENST00000297157 1121 ntAPPRIS P2 TSL 1 (best) BASIC27.78■■■□□ 2.04
CACNA1AO00555 DUX4L28-201ENST00000623687 678 ntBASIC27.78■■■□□ 2.04
CACNA1AO00555 AC096888.1-201ENST00000487097 565 ntTSL 4 BASIC27.77■■■□□ 2.04
CACNA1AO00555 PABPC1L2B-AS1-201ENST00000416989 1167 ntTSL 3 BASIC27.74■■■□□ 2.03
CACNA1AO00555 AL662864.1-201ENST00000454388 1167 ntTSL 3 BASIC27.74■■■□□ 2.03
CACNA1AO00555 H2AFV-205ENST00000381124 628 ntTSL 3 BASIC27.74■■■□□ 2.03
CACNA1AO00555 SMIM12-205ENST00000456842 918 ntAPPRIS P1 TSL 2 BASIC27.73■■■□□ 2.03
CACNA1AO00555 SEPT3-204ENST00000406029 1866 ntTSL 5 BASIC27.72■■■□□ 2.03
CACNA1AO00555 AC004540.2-201ENST00000451368 611 ntTSL 2 BASIC27.72■■■□□ 2.03
CACNA1AO00555 GRPEL2-204ENST00000513661 546 ntTSL 2 BASIC27.72■■■□□ 2.03
CACNA1AO00555 HS3ST6-201ENST00000454677 1273 ntAPPRIS P1 TSL 1 (best) BASIC27.7■■■□□ 2.03
CACNA1AO00555 AC012629.2-201ENST00000606513 377 ntTSL 5 BASIC27.65■■■□□ 2.02
CACNA1AO00555 MIR639-201ENST00000384974 98 ntBASIC27.62■■■□□ 2.01
CACNA1AO00555 SEC61G-204ENST00000450622 512 ntAPPRIS P1 TSL 2 BASIC27.61■■■□□ 2.01
CACNA1AO00555 CENPV-201ENST00000299736 1165 ntAPPRIS P1 TSL 1 (best) BASIC27.61■■■□□ 2.01
CACNA1AO00555 SRSF9-201ENST00000229390 1201 ntAPPRIS P1 TSL 1 (best) BASIC27.59■■■□□ 2.01
CACNA1AO00555 ZNRF2P2-203ENST00000454624 420 ntBASIC27.59■■■□□ 2.01
CACNA1AO00555 AC013394.1-201ENST00000629685 808 ntAPPRIS P1 TSL 5 BASIC27.57■■■□□ 2
CACNA1AO00555 AC187653.1-201ENST00000506382 702 ntAPPRIS P1 TSL 5 BASIC27.56■■■□□ 2
CACNA1AO00555 TP53I13-201ENST00000301057 1530 ntAPPRIS P2 TSL 1 (best) BASIC27.55■■■□□ 2
CACNA1AO00555 CALM3-209ENST00000597743 577 ntTSL 4 BASIC27.53■■■□□ 2
CACNA1AO00555 AL451007.3-201ENST00000640271 588 ntAPPRIS P1 BASIC27.53■■■□□ 2
CACNA1AO00555 LY6K-202ENST00000518841 855 ntAPPRIS ALT2 TSL 2 BASIC27.51■■□□□ 1.99
CACNA1AO00555 BRD4-212ENST00000630599 726 ntTSL 2 BASIC27.5■■□□□ 1.99
CACNA1AO00555 NME2-202ENST00000393190 866 ntAPPRIS P1 TSL 1 (best) BASIC27.49■■□□□ 1.99
CACNA1AO00555 CIB1-201ENST00000328649 1247 ntAPPRIS P1 TSL 1 (best) BASIC27.48■■□□□ 1.99
CACNA1AO00555 MIR762-201ENST00000390236 83 ntBASIC27.48■■□□□ 1.99
CACNA1AO00555 CIB1-202ENST00000612800 1096 ntTSL 1 (best) BASIC27.48■■□□□ 1.99
CACNA1AO00555 CDKN2D-202ENST00000393599 1422 ntAPPRIS P1 TSL 1 (best) BASIC27.48■■□□□ 1.99
CACNA1AO00555 AC005559.1-201ENST00000589661 871 ntBASIC27.47■■□□□ 1.99
CACNA1AO00555 CHML-205ENST00000638160 705 ntTSL 3 BASIC27.47■■□□□ 1.99
CACNA1AO00555 EBPL-202ENST00000378268 680 ntTSL 3 BASIC27.46■■□□□ 1.99
CACNA1AO00555 R3HDM4-208ENST00000626716 138 ntTSL 5 BASIC27.45■■□□□ 1.99
CACNA1AO00555 AL139393.1-201ENST00000417479 573 ntTSL 5 BASIC27.45■■□□□ 1.98
CACNA1AO00555 MACF1-219ENST00000484793 834 ntTSL 2 BASIC27.45■■□□□ 1.98
CACNA1AO00555 AL133380.1-201ENST00000506013 324 ntBASIC27.45■■□□□ 1.98
CACNA1AO00555 NT5DC2-202ENST00000422318 1795 ntAPPRIS ALT2 TSL 5 BASIC27.45■■□□□ 1.98
CACNA1AO00555 BOD1-201ENST00000285908 1286 ntTSL 1 (best) BASIC27.44■■□□□ 1.98
CACNA1AO00555 BOD1-206ENST00000480951 814 ntTSL 2 BASIC27.44■■□□□ 1.98
CACNA1AO00555 LSM14B-204ENST00000370915 1079 ntTSL 1 (best) BASIC27.43■■□□□ 1.98
CACNA1AO00555 REPIN1-204ENST00000466559 1022 ntTSL 1 (best) BASIC27.43■■□□□ 1.98
CACNA1AO00555 HGH1-207ENST00000628266 258 ntTSL 5 BASIC27.42■■□□□ 1.98
CACNA1AO00555 CLDND1-226ENST00000513287 999 ntAPPRIS P1 TSL 2 BASIC27.38■■□□□ 1.97
CACNA1AO00555 AC018755.3-201ENST00000598755 664 ntTSL 2 BASIC27.36■■□□□ 1.97
CACNA1AO00555 CD151-202ENST00000397420 1648 ntAPPRIS P2 TSL 1 (best) BASIC27.36■■□□□ 1.97
CACNA1AO00555 CATIP-201ENST00000289388 1323 ntAPPRIS P1 TSL 1 (best) BASIC27.35■■□□□ 1.97
CACNA1AO00555 PWWP2B-202ENST00000631148 2013 ntTSL 5 BASIC27.34■■□□□ 1.97
CACNA1AO00555 GFRA4-202ENST00000319242 900 ntAPPRIS P4 TSL 1 (best) BASIC27.32■■□□□ 1.96
CACNA1AO00555 RCC1L-205ENST00000618035 1409 ntTSL 1 (best) BASIC27.3■■□□□ 1.96
CACNA1AO00555 NKIRAS2-202ENST00000316082 833 ntTSL 5 BASIC27.29■■□□□ 1.96
CACNA1AO00555 LAPTM4B-203ENST00000521545 915 ntAPPRIS P1 TSL 1 (best) BASIC27.29■■□□□ 1.96
CACNA1AO00555 PTPRF-216ENST00000617451 1129 ntTSL 5 BASIC27.28■■□□□ 1.96
CACNA1AO00555 HNRNPAB-207ENST00000514633 1571 ntAPPRIS ALT2 TSL 5 BASIC27.27■■□□□ 1.96
CACNA1AO00555 AL118558.1-203ENST00000553701 447 ntTSL 3 BASIC27.26■■□□□ 1.95
CACNA1AO00555 C1orf122-204ENST00000468084 1234 ntAPPRIS ALT2 TSL 2 BASIC27.25■■□□□ 1.95
CACNA1AO00555 KCTD5-202ENST00000564195 774 ntTSL 5 BASIC27.25■■□□□ 1.95
CACNA1AO00555 CDKN2A-201ENST00000304494 1218 ntTSL 1 (best) BASIC27.24■■□□□ 1.95
CACNA1AO00555 SLC35D2-202ENST00000375257 889 ntTSL 2 BASIC27.24■■□□□ 1.95
CACNA1AO00555 MIR3648-2-201ENST00000581792 180 ntBASIC27.19■■□□□ 1.94
CACNA1AO00555 MIR3648-1-201ENST00000615959 180 ntBASIC27.19■■□□□ 1.94
CACNA1AO00555 AC019069.1-201ENST00000610008 1333 ntBASIC27.19■■□□□ 1.94
CACNA1AO00555 RHOC-208ENST00000369642 1355 ntAPPRIS P1 TSL 1 (best) BASIC27.17■■□□□ 1.94
CACNA1AO00555 GSC-201ENST00000238558 1264 ntAPPRIS P1 TSL 1 (best) BASIC27.16■■□□□ 1.94
CACNA1AO00555 AC007383.2-202ENST00000435627 482 ntTSL 2 BASIC27.15■■□□□ 1.94
CACNA1AO00555 NEURL1B-203ENST00000522853 1263 ntTSL 1 (best) BASIC27.15■■□□□ 1.94
CACNA1AO00555 FAM149A-215ENST00000514153 2070 ntAPPRIS P2 TSL 5 BASIC27.14■■□□□ 1.93
CACNA1AO00555 ANKS1B-202ENST00000333732 1675 ntTSL 2 BASIC27.13■■□□□ 1.93
CACNA1AO00555 U2AF1-201ENST00000291552 962 ntAPPRIS P3 TSL 1 (best) BASIC27.13■■□□□ 1.93
CACNA1AO00555 U2AF1L5-202ENST00000619610 813 ntAPPRIS ALT2 TSL 1 (best) BASIC27.13■■□□□ 1.93
CACNA1AO00555 KRT18-201ENST00000388835 1562 ntAPPRIS P1 TSL 1 (best) BASIC27.13■■□□□ 1.93
CACNA1AO00555 MVK-208ENST00000539696 608 ntTSL 5 BASIC27.13■■□□□ 1.93
CACNA1AO00555 ABHD17AP3-201ENST00000503096 1137 ntBASIC27.12■■□□□ 1.93
CACNA1AO00555 SIGMAR1-205ENST00000477726 840 ntTSL 1 (best) BASIC27.11■■□□□ 1.93
CACNA1AO00555 CCNYL1-205ENST00000420822 952 ntTSL 1 (best) BASIC27.11■■□□□ 1.93
CACNA1AO00555 AC234582.1-201ENST00000447623 923 ntTSL 5 BASIC27.1■■□□□ 1.93
CACNA1AO00555 ELOC-207ENST00000522337 816 ntAPPRIS P1 TSL 2 BASIC27.1■■□□□ 1.93
CACNA1AO00555 RSG1-201ENST00000375599 1545 ntAPPRIS P1 TSL 1 (best) BASIC27.09■■□□□ 1.93
CACNA1AO00555 AC145285.7-201ENST00000614819 1539 ntBASIC27.09■■□□□ 1.93
CACNA1AO00555 TPGS1-201ENST00000359315 1114 ntAPPRIS P1 TSL 1 (best) BASIC27.09■■□□□ 1.93
CACNA1AO00555 HDAC11-206ENST00000405025 576 ntTSL 4 BASIC27.09■■□□□ 1.93
CACNA1AO00555 EIF5A-208ENST00000573542 1089 ntAPPRIS P1 TSL 2 BASIC27.09■■□□□ 1.93
CACNA1AO00555 DCUN1D5-201ENST00000260247 1337 ntAPPRIS P1 TSL 1 (best) BASIC27.08■■□□□ 1.93
CACNA1AO00555 HOXD-AS2-202ENST00000440016 999 ntTSL 5 BASIC27.08■■□□□ 1.93
Retrieved 100 of 98,524 protein–RNA pairs in 14.2 ms