Protein–RNA interactions for Protein: Q86TS7

LINC00643, Putative UPF0730 protein encoded by LINC00643, humanhuman

Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643Q86TS7 TRMO-203ENST00000375119 1647 ntAPPRIS P1 TSL 1 (best) BASIC8.57□□□□□ -1.04
LINC00643Q86TS7 AC139712.1-201ENST00000378256 1875 ntBASIC8.57□□□□□ -1.04
LINC00643Q86TS7 DCK-204ENST00000504952 2614 ntTSL 3 BASIC8.57□□□□□ -1.04
LINC00643Q86TS7 GRN-214ENST00000589265 1632 ntTSL 5 BASIC8.57□□□□□ -1.04
LINC00643Q86TS7 GLMP-213ENST00000612353 1365 ntAPPRIS ALT2 TSL 5 BASIC8.57□□□□□ -1.04
LINC00643Q86TS7 GLMP-215ENST00000622703 1364 ntAPPRIS ALT2 TSL 2 BASIC8.57□□□□□ -1.04
LINC00643Q86TS7 BEND3-201ENST00000369042 6200 ntAPPRIS P1 TSL 5 BASIC8.57□□□□□ -1.04
LINC00643Q86TS7 SEC24A-201ENST00000322887 2700 ntTSL 1 (best) BASIC8.57□□□□□ -1.04
LINC00643Q86TS7 ELP4-212ENST00000638764 2456 ntTSL 5 BASIC8.57□□□□□ -1.04
LINC00643Q86TS7 TBCD-201ENST00000355528 7168 ntAPPRIS P1 TSL 1 (best) BASIC8.57□□□□□ -1.04
LINC00643Q86TS7 PTCHD1-201ENST00000379361 13714 ntAPPRIS P1 TSL 1 (best) BASIC8.57□□□□□ -1.04
LINC00643Q86TS7 ARHGAP8-201ENST00000336963 1487 ntTSL 1 (best) BASIC8.57□□□□□ -1.04
LINC00643Q86TS7 FHAD1-205ENST00000375997 1459 ntTSL 3 BASIC8.57□□□□□ -1.04
LINC00643Q86TS7 DAPK1-213ENST00000491893 4186 ntTSL 1 (best) BASIC8.57□□□□□ -1.04
LINC00643Q86TS7 AC068473.3-202ENST00000589723 4167 ntTSL 1 (best) BASIC8.57□□□□□ -1.04
LINC00643Q86TS7 PFKM-202ENST00000340802 3176 ntTSL 2 BASIC8.57□□□□□ -1.04
LINC00643Q86TS7 AC006372.3-201ENST00000444158 4049 ntTSL 1 (best) BASIC8.57□□□□□ -1.04
LINC00643Q86TS7 CD3EAP-202ENST00000589804 1830 ntAPPRIS ALT2 TSL 1 (best) BASIC8.57□□□□□ -1.04
LINC00643Q86TS7 PIK3CD-207ENST00000543390 3503 ntTSL 5 BASIC8.57□□□□□ -1.04
LINC00643Q86TS7 NAB1-201ENST00000337386 4358 ntAPPRIS P3 TSL 1 (best) BASIC8.57□□□□□ -1.04
LINC00643Q86TS7 ZNF568-201ENST00000333987 2441 ntAPPRIS P1 TSL 1 (best) BASIC8.56□□□□□ -1.04
LINC00643Q86TS7 MIIP-201ENST00000235332 1573 ntAPPRIS P1 TSL 1 (best) BASIC8.56□□□□□ -1.04
LINC00643Q86TS7 MRFAP1-202ENST00000382581 1584 ntAPPRIS P1 TSL 1 (best) BASIC8.56□□□□□ -1.04
LINC00643Q86TS7 KLK10-203ENST00000391805 3006 ntAPPRIS P1 TSL 5 BASIC8.56□□□□□ -1.04
LINC00643Q86TS7 GABPB1-203ENST00000380877 4816 ntAPPRIS P1 TSL 1 (best) BASIC8.56□□□□□ -1.04
LINC00643Q86TS7 AC079465.1-201ENST00000416046 3361 ntTSL 2 BASIC8.56□□□□□ -1.04
LINC00643Q86TS7 AC005332.1-201ENST00000577698 1310 ntBASIC8.56□□□□□ -1.04
LINC00643Q86TS7 CDH4-201ENST00000543233 3117 ntTSL 2 BASIC8.56□□□□□ -1.04
LINC00643Q86TS7 DZIP1-201ENST00000347108 7068 ntAPPRIS P4 TSL 5 BASIC8.56□□□□□ -1.04
LINC00643Q86TS7 CPEB4-207ENST00000519835 2257 ntTSL 1 (best) BASIC8.56□□□□□ -1.04
LINC00643Q86TS7 PITX2-204ENST00000394595 1693 ntTSL 5 BASIC8.56□□□□□ -1.04
LINC00643Q86TS7 ENTPD3-203ENST00000445129 1658 ntTSL 1 (best) BASIC8.56□□□□□ -1.04
LINC00643Q86TS7 MGRN1-211ENST00000588994 1665 ntTSL 1 (best) BASIC8.56□□□□□ -1.04
LINC00643Q86TS7 MPP2-201ENST00000269095 4414 ntTSL 1 (best) BASIC8.56□□□□□ -1.04
LINC00643Q86TS7 CYP1A1-202ENST00000395048 2608 ntAPPRIS P1 TSL 1 (best) BASIC8.56□□□□□ -1.04
LINC00643Q86TS7 ITGA7-213ENST00000555728 3930 ntAPPRIS ALT2 TSL 5 BASIC8.56□□□□□ -1.04
LINC00643Q86TS7 ABCD1-201ENST00000218104 3664 ntAPPRIS P1 TSL 1 (best) BASIC8.56□□□□□ -1.04
LINC00643Q86TS7 MIR9-3HG-203ENST00000546186 2718 ntTSL 2 BASIC8.56□□□□□ -1.04
LINC00643Q86TS7 ATP8B3-202ENST00000525591 4014 ntAPPRIS ALT2 TSL 1 (best) BASIC8.56□□□□□ -1.04
LINC00643Q86TS7 OXA1L-202ENST00000358043 1750 ntTSL 2 BASIC8.56□□□□□ -1.04
LINC00643Q86TS7 DLC1-210ENST00000512044 3758 ntTSL 2 BASIC8.56□□□□□ -1.04
LINC00643Q86TS7 TSPAN6-201ENST00000373020 2206 ntAPPRIS P1 TSL 1 (best) BASIC8.56□□□□□ -1.04
LINC00643Q86TS7 PCDHB6-201ENST00000231136 3266 ntAPPRIS P1 BASIC8.56□□□□□ -1.04
LINC00643Q86TS7 PTPN7-202ENST00000367279 3265 ntAPPRIS ALT2 TSL 1 (best) BASIC8.56□□□□□ -1.04
LINC00643Q86TS7 STAT1-201ENST00000361099 4310 ntAPPRIS P3 TSL 1 (best) BASIC8.56□□□□□ -1.04
LINC00643Q86TS7 EIF5B-205ENST00000617677 4698 ntAPPRIS ALT1 TSL 5 BASIC8.56□□□□□ -1.04
LINC00643Q86TS7 DDA1-201ENST00000359866 4078 ntAPPRIS P1 TSL 1 (best) BASIC8.56□□□□□ -1.04
LINC00643Q86TS7 SERINC4-201ENST00000299969 2318 ntTSL 5 BASIC8.56□□□□□ -1.04
LINC00643Q86TS7 MLPH-202ENST00000338530 2332 ntAPPRIS ALT2 TSL 1 (best) BASIC8.56□□□□□ -1.04
LINC00643Q86TS7 ZNF169-202ENST00000395395 1986 ntAPPRIS P1 TSL 2 BASIC8.56□□□□□ -1.04
LINC00643Q86TS7 PRR19-202ENST00000499536 1956 ntAPPRIS P2 TSL 2 BASIC8.56□□□□□ -1.04
LINC00643Q86TS7 NBPF5P-201ENST00000357046 1606 ntTSL 1 (best) BASIC8.56□□□□□ -1.04
LINC00643Q86TS7 SPCS1-201ENST00000233025 1082 ntTSL 1 (best) BASIC8.56□□□□□ -1.04
LINC00643Q86TS7 LY6E-201ENST00000292494 1181 ntAPPRIS P2 TSL 1 (best) BASIC8.56□□□□□ -1.04
LINC00643Q86TS7 PTCRA-201ENST00000304672 1080 ntAPPRIS P3 TSL 1 (best) BASIC8.56□□□□□ -1.04
LINC00643Q86TS7 CD7-201ENST00000312648 1281 ntAPPRIS P2 TSL 1 (best) BASIC8.56□□□□□ -1.04
LINC00643Q86TS7 ABHD17AP1-201ENST00000358206 933 ntBASIC8.56□□□□□ -1.04
LINC00643Q86TS7 LCE4A-202ENST00000368777 672 ntAPPRIS P1 TSL 2 BASIC8.56□□□□□ -1.04
LINC00643Q86TS7 BEX4-201ENST00000372691 1066 ntAPPRIS P1 TSL 2 BASIC8.56□□□□□ -1.04
LINC00643Q86TS7 MIR1238-201ENST00000408483 83 ntBASIC8.56□□□□□ -1.04
LINC00643Q86TS7 AC092474.2-201ENST00000424288 719 ntBASIC8.56□□□□□ -1.04
LINC00643Q86TS7 AC005076.1-201ENST00000433446 769 ntTSL 1 (best) BASIC8.56□□□□□ -1.04
LINC00643Q86TS7 NCF1B-203ENST00000435988 1254 ntBASIC8.56□□□□□ -1.04
LINC00643Q86TS7 PTCRA-202ENST00000441198 1005 ntTSL 1 (best) BASIC8.56□□□□□ -1.04
LINC00643Q86TS7 PTCRA-203ENST00000446507 759 ntTSL 1 (best) BASIC8.56□□□□□ -1.04
LINC00643Q86TS7 OAZ3-203ENST00000453029 729 ntTSL 5 BASIC8.56□□□□□ -1.04
LINC00643Q86TS7 MINOS1P3-201ENST00000457048 203 ntBASIC8.56□□□□□ -1.04
LINC00643Q86TS7 AC091607.1-201ENST00000490318 1060 ntBASIC8.56□□□□□ -1.04
LINC00643Q86TS7 PACRGL-207ENST00000502938 810 ntTSL 4 BASIC8.56□□□□□ -1.04
LINC00643Q86TS7 AC091053.1-201ENST00000529883 744 ntTSL 3 BASIC8.56□□□□□ -1.04
LINC00643Q86TS7 CDC42EP2-202ENST00000533419 1279 ntAPPRIS P1 TSL 3 BASIC8.56□□□□□ -1.04
LINC00643Q86TS7 DDN-AS1-201ENST00000547395 858 ntTSL 2 BASIC8.56□□□□□ -1.04
LINC00643Q86TS7 AP003071.4-201ENST00000562276 1284 ntBASIC8.56□□□□□ -1.04
LINC00643Q86TS7 SLC25A6P4-201ENST00000586535 553 ntBASIC8.56□□□□□ -1.04
LINC00643Q86TS7 TXNL4A-211ENST00000592837 611 ntTSL 2 BASIC8.56□□□□□ -1.04
LINC00643Q86TS7 BCAS3-202ENST00000407086 3496 ntAPPRIS P3 TSL 1 (best) BASIC8.56□□□□□ -1.04
LINC00643Q86TS7 POLR3F-201ENST00000377603 2416 ntAPPRIS P1 TSL 1 (best) BASIC8.56□□□□□ -1.04
LINC00643Q86TS7 DLEU2-201ENST00000235290 1739 ntTSL 5 BASIC8.56□□□□□ -1.04
LINC00643Q86TS7 FAM71F1-201ENST00000315184 1718 ntAPPRIS P1 TSL 1 (best) BASIC8.56□□□□□ -1.04
LINC00643Q86TS7 AC068299.1-201ENST00000624716 1749 ntBASIC8.56□□□□□ -1.04
LINC00643Q86TS7 ZNF304-204ENST00000598744 3331 ntTSL 1 (best) BASIC8.56□□□□□ -1.04
LINC00643Q86TS7 BIRC7-201ENST00000217169 1368 ntAPPRIS P4 TSL 1 (best) BASIC8.56□□□□□ -1.04
LINC00643Q86TS7 LCMT1-203ENST00000399069 1368 ntAPPRIS P1 TSL 1 (best) BASIC8.56□□□□□ -1.04
LINC00643Q86TS7 CHST4-202ENST00000539698 2183 ntAPPRIS P1 TSL 1 (best) BASIC8.56□□□□□ -1.04
LINC00643Q86TS7 KIAA0895-202ENST00000317020 4241 ntTSL 1 (best) BASIC8.56□□□□□ -1.04
LINC00643Q86TS7 S1PR3-201ENST00000358157 4206 ntAPPRIS P1 TSL 1 (best) BASIC8.56□□□□□ -1.04
LINC00643Q86TS7 GABRR1-201ENST00000369451 1823 ntTSL 5 BASIC8.56□□□□□ -1.04
LINC00643Q86TS7 GLYR1-212ENST00000591451 1831 ntAPPRIS ALT1 TSL 1 (best) BASIC8.56□□□□□ -1.04
LINC00643Q86TS7 HNRNPR-212ENST00000606561 1837 ntTSL 2 BASIC8.56□□□□□ -1.04
LINC00643Q86TS7 MKL1-212ENST00000618417 1842 ntTSL 5 BASIC8.56□□□□□ -1.04
LINC00643Q86TS7 MANEA-AS1-201ENST00000564541 2268 ntBASIC8.56□□□□□ -1.04
LINC00643Q86TS7 MIS18BP1-201ENST00000310806 4777 ntAPPRIS P1 TSL 1 (best) BASIC8.56□□□□□ -1.04
LINC00643Q86TS7 USP1-201ENST00000339950 3996 ntAPPRIS P1 TSL 1 (best) BASIC8.56□□□□□ -1.04
LINC00643Q86TS7 SCML1-204ENST00000398080 2704 ntAPPRIS ALT2 TSL 1 (best) BASIC8.56□□□□□ -1.04
LINC00643Q86TS7 RUBCNL-212ENST00000631139 1948 ntAPPRIS ALT2 TSL 2 BASIC8.56□□□□□ -1.04
LINC00643Q86TS7 KCNAB1-201ENST00000302490 4086 ntAPPRIS P1 TSL 1 (best) BASIC8.56□□□□□ -1.04
LINC00643Q86TS7 CHID1-205ENST00000454838 3255 ntTSL 5 BASIC8.56□□□□□ -1.04
LINC00643Q86TS7 CTNNB1-203ENST00000396185 3356 ntAPPRIS P1 TSL 1 (best) BASIC8.56□□□□□ -1.04
LINC00643Q86TS7 SIRT5-204ENST00000397350 4382 ntTSL 1 (best) BASIC8.56□□□□□ -1.04
LINC00643Q86TS7 MVK-213ENST00000625889 2591 ntTSL 1 (best) BASIC8.56□□□□□ -1.04
Retrieved 100 of 98,524 protein–RNA pairs in 73.7 ms