Protein–RNA interactions for Protein: Q08174

PCDH1, Protocadherin-1, humanhuman

Predictions only

Length 1,060 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH1Q08174 CAND2-204ENST00000456430 4573 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
PCDH1Q08174 RAB18-208ENST00000611151 4931 ntTSL 5 BASIC13.52□□□□□ -0.25
PCDH1Q08174 TRIM11-204ENST00000493030 5774 ntTSL 1 (best) BASIC13.52□□□□□ -0.25
PCDH1Q08174 MYO1C-218ENST00000575158 4804 ntAPPRIS P3 TSL 5 BASIC13.51□□□□□ -0.25
PCDH1Q08174 SYT12-201ENST00000393946 4534 ntAPPRIS P1 TSL 2 BASIC13.51□□□□□ -0.25
PCDH1Q08174 HAGLR-202ENST00000416928 4235 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
PCDH1Q08174 HEPACAM-201ENST00000298251 3602 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
PCDH1Q08174 KCNC2-202ENST00000350228 3344 ntAPPRIS ALT2 TSL 2 BASIC13.51□□□□□ -0.25
PCDH1Q08174 FAM30A-205ENST00000630242 9612 ntTSL 2 BASIC13.51□□□□□ -0.25
PCDH1Q08174 PHTF1-203ENST00000369600 3075 ntTSL 5 BASIC13.51□□□□□ -0.25
PCDH1Q08174 CHD1-212ENST00000614616 8095 ntAPPRIS P1 TSL 5 BASIC13.51□□□□□ -0.25
PCDH1Q08174 IFT172-202ENST00000359466 2207 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
PCDH1Q08174 DLGAP1-202ENST00000400145 2188 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
PCDH1Q08174 SLC37A4-201ENST00000330775 2102 ntAPPRIS P1 TSL 5 BASIC13.51□□□□□ -0.25
PCDH1Q08174 MRPL17-201ENST00000288937 1969 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
PCDH1Q08174 GOLGA8IP-201ENST00000340249 1899 ntTSL 2 BASIC13.51□□□□□ -0.25
PCDH1Q08174 ARSH-201ENST00000381130 1875 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
PCDH1Q08174 PPP2R1B-204ENST00000426998 1888 ntAPPRIS ALT2 TSL 2 BASIC13.51□□□□□ -0.25
PCDH1Q08174 ZCCHC17-201ENST00000344147 1605 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
PCDH1Q08174 ZNF541-202ENST00000314121 4631 ntAPPRIS ALT2 TSL 5 BASIC13.51□□□□□ -0.25
PCDH1Q08174 KRT8P31-201ENST00000504812 1408 ntBASIC13.51□□□□□ -0.25
PCDH1Q08174 OR1J1-201ENST00000259357 969 ntAPPRIS P1 BASIC13.51□□□□□ -0.25
PCDH1Q08174 CMTM1-201ENST00000328020 981 ntAPPRIS ALT2 TSL 1 (best) BASIC13.51□□□□□ -0.25
PCDH1Q08174 CMTM1-202ENST00000332695 624 ntAPPRIS ALT2 TSL 1 (best) BASIC13.51□□□□□ -0.25
PCDH1Q08174 NUDT2-201ENST00000346365 960 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
PCDH1Q08174 MBP-201ENST00000354542 575 ntTSL 2 BASIC13.51□□□□□ -0.25
PCDH1Q08174 CDKN1A-202ENST00000373711 793 ntAPPRIS P1 TSL 5 BASIC13.51□□□□□ -0.25
PCDH1Q08174 CMTM1-205ENST00000379500 1064 ntAPPRIS P4 TSL 1 (best) BASIC13.51□□□□□ -0.25
PCDH1Q08174 HSPB7-203ENST00000406363 648 ntAPPRIS ALT1 TSL 1 (best) BASIC13.51□□□□□ -0.25
PCDH1Q08174 AC016825.1-201ENST00000433600 778 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
PCDH1Q08174 HLA-DQB2-232ENST00000437316 1214 ntAPPRIS P1 BASIC13.51□□□□□ -0.25
PCDH1Q08174 AL139420.1-201ENST00000439394 653 ntTSL 3 BASIC13.51□□□□□ -0.25
PCDH1Q08174 AL109924.1-201ENST00000444586 914 ntTSL 3 BASIC13.51□□□□□ -0.25
PCDH1Q08174 AC007279.1-201ENST00000448547 837 ntBASIC13.51□□□□□ -0.25
PCDH1Q08174 KRT8P13-201ENST00000463294 1010 ntBASIC13.51□□□□□ -0.25
PCDH1Q08174 STMN4-207ENST00000523048 1224 ntTSL 2 BASIC13.51□□□□□ -0.25
PCDH1Q08174 CMTM1-209ENST00000528324 749 ntAPPRIS ALT2 TSL 1 (best) BASIC13.51□□□□□ -0.25
PCDH1Q08174 CMTM1-217ENST00000533666 493 ntAPPRIS ALT2 TSL 1 (best) BASIC13.51□□□□□ -0.25
PCDH1Q08174 LINC01154-201ENST00000548617 454 ntTSL 3 BASIC13.51□□□□□ -0.25
PCDH1Q08174 CD63-208ENST00000549117 1233 ntAPPRIS P1 TSL 3 BASIC13.51□□□□□ -0.25
PCDH1Q08174 AC040162.4-201ENST00000574912 1185 ntAPPRIS P1 TSL 3 BASIC13.51□□□□□ -0.25
PCDH1Q08174 IRF3-223ENST00000599223 1055 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
PCDH1Q08174 AL133467.4-201ENST00000602953 725 ntBASIC13.51□□□□□ -0.25
PCDH1Q08174 EAF1-AS1-208ENST00000608408 770 ntTSL 5 BASIC13.51□□□□□ -0.25
PCDH1Q08174 NUDT2-204ENST00000618590 825 ntAPPRIS P1 TSL 3 BASIC13.51□□□□□ -0.25
PCDH1Q08174 LINC00969-294ENST00000627609 992 ntTSL 5 BASIC13.51□□□□□ -0.25
PCDH1Q08174 AC244452.3-201ENST00000636814 210 ntBASIC13.51□□□□□ -0.25
PCDH1Q08174 ASAP1-201ENST00000357668 6344 ntAPPRIS ALT2 TSL 5 BASIC13.51□□□□□ -0.25
PCDH1Q08174 PHTF2-206ENST00000422959 3525 ntAPPRIS P4 TSL 5 BASIC13.51□□□□□ -0.25
PCDH1Q08174 ACOX1-201ENST00000293217 7514 ntAPPRIS P5 TSL 1 (best) BASIC13.51□□□□□ -0.25
PCDH1Q08174 ELN-210ENST00000380584 3214 ntAPPRIS ALT2 TSL 1 (best) BASIC13.51□□□□□ -0.25
PCDH1Q08174 LIMD2-201ENST00000259006 3193 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
PCDH1Q08174 NDRG4-221ENST00000563799 3014 ntAPPRIS ALT1 TSL 2 BASIC13.51□□□□□ -0.25
PCDH1Q08174 KIRREL2-203ENST00000360202 2942 ntAPPRIS P4 TSL 1 (best) BASIC13.51□□□□□ -0.25
PCDH1Q08174 RTN4-202ENST00000337526 4790 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
PCDH1Q08174 SH3TC2-202ENST00000502274 2681 ntTSL 2 BASIC13.51□□□□□ -0.25
PCDH1Q08174 AC022028.2-201ENST00000474115 2619 ntTSL 2 BASIC13.51□□□□□ -0.25
PCDH1Q08174 SYBU-217ENST00000528331 2636 ntAPPRIS ALT2 TSL 1 (best) BASIC13.51□□□□□ -0.25
PCDH1Q08174 INMT-201ENST00000013222 2559 ntAPPRIS P3 TSL 1 (best) BASIC13.51□□□□□ -0.25
PCDH1Q08174 AXL-203ENST00000593513 2557 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
PCDH1Q08174 FAM9C-205ENST00000542843 5858 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
PCDH1Q08174 ITGB4-202ENST00000449880 5689 ntAPPRIS P3 TSL 1 (best) BASIC13.51□□□□□ -0.25
PCDH1Q08174 ENDOV-207ENST00000518907 2418 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
PCDH1Q08174 ARHGEF26-202ENST00000465093 3929 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
PCDH1Q08174 DISP3-201ENST00000294484 5215 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
PCDH1Q08174 SCUBE2-201ENST00000309263 3727 ntTSL 5 BASIC13.51□□□□□ -0.25
PCDH1Q08174 ZFP28-204ENST00000591844 3475 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
PCDH1Q08174 CNN2-202ENST00000348419 2033 ntTSL 2 BASIC13.51□□□□□ -0.25
PCDH1Q08174 FOXM1-203ENST00000361953 3370 ntAPPRIS ALT1 TSL 1 (best) BASIC13.51□□□□□ -0.25
PCDH1Q08174 PCK2-216ENST00000561286 2012 ntTSL 2 BASIC13.51□□□□□ -0.25
PCDH1Q08174 MED15-204ENST00000406969 3210 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
PCDH1Q08174 CERKL-206ENST00000410087 3208 ntAPPRIS ALT2 TSL 1 (best) BASIC13.51□□□□□ -0.25
PCDH1Q08174 TCOF1-207ENST00000504761 4467 ntAPPRIS ALT2 TSL 1 (best) BASIC13.51□□□□□ -0.25
PCDH1Q08174 HEXA-206ENST00000566304 1795 ntTSL 2 BASIC13.5□□□□□ -0.25
PCDH1Q08174 ZNF493-208ENST00000599461 1769 ntBASIC13.5□□□□□ -0.25
PCDH1Q08174 MFAP3-201ENST00000322602 2891 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
PCDH1Q08174 RGS6-218ENST00000556437 1689 ntAPPRIS ALT1 TSL 1 (best) BASIC13.5□□□□□ -0.25
PCDH1Q08174 SLC9A8-201ENST00000361573 6094 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
PCDH1Q08174 PCDHGA3-203ENST00000619750 2695 ntAPPRIS ALT2 BASIC13.5□□□□□ -0.25
PCDH1Q08174 PGAP2-227ENST00000496834 1530 ntTSL 2 BASIC13.5□□□□□ -0.25
PCDH1Q08174 METTL17-221ENST00000556670 1500 ntAPPRIS ALT2 TSL 1 (best) BASIC13.5□□□□□ -0.25
PCDH1Q08174 NCOA7-203ENST00000392477 6457 ntAPPRIS P3 TSL 1 (best) BASIC13.5□□□□□ -0.25
PCDH1Q08174 COX4I1-208ENST00000564903 1481 ntTSL 2 BASIC13.5□□□□□ -0.25
PCDH1Q08174 PPFIA4-204ENST00000447715 6349 ntAPPRIS ALT2 TSL 1 (best) BASIC13.5□□□□□ -0.25
PCDH1Q08174 PDCD6IPP2-206ENST00000566178 3351 ntTSL 5 BASIC13.5□□□□□ -0.25
PCDH1Q08174 SIPA1L3-201ENST00000222345 7987 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
PCDH1Q08174 PAX2-202ENST00000361791 3193 ntAPPRIS ALT1 TSL 2 BASIC13.5□□□□□ -0.25
PCDH1Q08174 TMPRSS6-203ENST00000406725 3122 ntAPPRIS ALT2 TSL 1 (best) BASIC13.5□□□□□ -0.25
PCDH1Q08174 EDEM3-202ENST00000367512 6678 ntAPPRIS ALT2 TSL 1 (best) BASIC13.5□□□□□ -0.25
PCDH1Q08174 SIRPA-202ENST00000358771 3996 ntAPPRIS P3 TSL 1 (best) BASIC13.5□□□□□ -0.25
PCDH1Q08174 CDC25B-205ENST00000439880 3096 ntAPPRIS ALT2 TSL 1 (best) BASIC13.5□□□□□ -0.25
PCDH1Q08174 B4GALT6-201ENST00000237019 2128 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
PCDH1Q08174 IL17B-201ENST00000261796 696 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
PCDH1Q08174 COX14-201ENST00000317943 708 ntAPPRIS P1 TSL 2 BASIC13.5□□□□□ -0.25
PCDH1Q08174 IFNL2-201ENST00000331982 737 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
PCDH1Q08174 NOSIP-201ENST00000339093 1000 ntAPPRIS ALT1 TSL 5 BASIC13.5□□□□□ -0.25
PCDH1Q08174 IP6K2-202ENST00000340879 1185 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
PCDH1Q08174 FAM163B-201ENST00000356873 1131 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
PCDH1Q08174 NACA-202ENST00000393891 1059 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
PCDH1Q08174 CYP46A4P-201ENST00000414953 267 ntBASIC13.5□□□□□ -0.25
Retrieved 100 of 98,524 protein–RNA pairs in 68.5 ms