Protein–RNA interactions for Protein: P20849

COL9A1, Collagen alpha-1(IX) chain, humanhuman

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1P20849 SLC13A2-205ENST00000545060 1276 ntTSL 5 BASIC14.31□□□□□ -0.12
COL9A1P20849 TROAP-213ENST00000550709 778 ntAPPRIS ALT2 TSL 2 BASIC14.31□□□□□ -0.12
COL9A1P20849 CSRP2-207ENST00000552330 910 ntTSL 3 BASIC14.31□□□□□ -0.12
COL9A1P20849 HNRNPC-221ENST00000555883 1182 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
COL9A1P20849 AC027279.2-201ENST00000561938 793 ntTSL 5 BASIC14.31□□□□□ -0.12
COL9A1P20849 AL023284.3-202ENST00000571188 543 ntTSL 5 BASIC14.31□□□□□ -0.12
COL9A1P20849 AC005920.4-201ENST00000573301 492 ntTSL 4 BASIC14.31□□□□□ -0.12
COL9A1P20849 AC005323.2-202ENST00000581304 493 ntTSL 3 BASIC14.31□□□□□ -0.12
COL9A1P20849 SNHG15-210ENST00000585030 953 ntTSL 3 BASIC14.31□□□□□ -0.12
COL9A1P20849 AL049840.2-201ENST00000602722 535 ntBASIC14.31□□□□□ -0.12
COL9A1P20849 Metazoa_SRP.173-201ENST00000614020 273 ntBASIC14.31□□□□□ -0.12
COL9A1P20849 OR5H6-201ENST00000615035 1113 ntAPPRIS P1 BASIC14.31□□□□□ -0.12
COL9A1P20849 BX510359.7-201ENST00000619819 630 ntBASIC14.31□□□□□ -0.12
COL9A1P20849 NR1I2-206ENST00000638727 1194 ntAPPRIS ALT2 TSL 5 BASIC14.31□□□□□ -0.12
COL9A1P20849 CNTLN-202ENST00000380647 5576 ntAPPRIS P3 TSL 1 (best) BASIC14.31□□□□□ -0.12
COL9A1P20849 AC131649.1-201ENST00000569215 1313 ntBASIC14.31□□□□□ -0.12
COL9A1P20849 KRT8-205ENST00000546897 1755 ntAPPRIS P1 TSL 2 BASIC14.31□□□□□ -0.12
COL9A1P20849 NUDT16P1-202ENST00000499077 2208 ntTSL 2 BASIC14.31□□□□□ -0.12
COL9A1P20849 NLRX1-202ENST00000409109 4092 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
COL9A1P20849 C17orf80-203ENST00000359042 3645 ntAPPRIS P3 TSL 5 BASIC14.31□□□□□ -0.12
COL9A1P20849 TRIM23-202ENST00000274327 1829 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
COL9A1P20849 SULT1A1-203ENST00000395607 1386 ntAPPRIS P1 TSL 5 BASIC14.31□□□□□ -0.12
COL9A1P20849 GIGYF1-201ENST00000275732 6530 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
COL9A1P20849 SLC35A3-221ENST00000640600 3341 ntTSL 5 BASIC14.31□□□□□ -0.12
COL9A1P20849 NBAT1-201ENST00000566912 1940 ntTSL 2 BASIC14.31□□□□□ -0.12
COL9A1P20849 COX4I1-208ENST00000564903 1481 ntTSL 2 BASIC14.31□□□□□ -0.12
COL9A1P20849 BTNL8-211ENST00000610640 1488 ntTSL 5 BASIC14.31□□□□□ -0.12
COL9A1P20849 PES1-201ENST00000335214 1988 ntAPPRIS ALT1 TSL 1 (best) BASIC14.31□□□□□ -0.12
COL9A1P20849 PARP10-201ENST00000313028 3497 ntAPPRIS P3 TSL 1 (best) BASIC14.31□□□□□ -0.12
COL9A1P20849 CTNNBIP1-203ENST00000377263 3000 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
COL9A1P20849 SRSF12-201ENST00000452027 3599 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
COL9A1P20849 TMEM65-201ENST00000297632 9029 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
COL9A1P20849 LINC01565-201ENST00000356020 2697 ntTSL 2 BASIC14.3□□□□□ -0.12
COL9A1P20849 AC144831.1-201ENST00000573312 2656 ntBASIC14.3□□□□□ -0.12
COL9A1P20849 GCLM-201ENST00000370238 4857 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
COL9A1P20849 ZSWIM8-221ENST00000604729 6075 ntAPPRIS ALT1 TSL 5 BASIC14.3□□□□□ -0.12
COL9A1P20849 ALDH3A2-221ENST00000581518 2785 ntAPPRIS ALT1 TSL 5 BASIC14.3□□□□□ -0.12
COL9A1P20849 PAXBP1-202ENST00000331923 3995 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
COL9A1P20849 TPCN1-201ENST00000335509 5274 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
COL9A1P20849 PM20D2-201ENST00000275072 4708 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
COL9A1P20849 TNFRSF14-AS1-202ENST00000432521 3608 ntTSL 2 BASIC14.3□□□□□ -0.12
COL9A1P20849 HIBCH-202ENST00000392332 2463 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
COL9A1P20849 DGAT1-206ENST00000528718 3711 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
COL9A1P20849 SPATA21-202ENST00000375577 1136 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
COL9A1P20849 CDRT15L2-201ENST00000399044 1048 ntAPPRIS P1 TSL 2 BASIC14.3□□□□□ -0.12
COL9A1P20849 AL353626.3-201ENST00000413399 657 ntBASIC14.3□□□□□ -0.12
COL9A1P20849 BX679664.3-201ENST00000414070 555 ntBASIC14.3□□□□□ -0.12
COL9A1P20849 SF3B1-204ENST00000414963 651 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
COL9A1P20849 AC000077.1-201ENST00000420012 953 ntBASIC14.3□□□□□ -0.12
COL9A1P20849 AL049792.1-201ENST00000424708 1262 ntBASIC14.3□□□□□ -0.12
COL9A1P20849 PSMB8-AS1-204ENST00000429600 996 ntTSL 2 BASIC14.3□□□□□ -0.12
COL9A1P20849 GRPEL2P1-201ENST00000453145 339 ntBASIC14.3□□□□□ -0.12
COL9A1P20849 AC113935.1-201ENST00000471722 555 ntBASIC14.3□□□□□ -0.12
COL9A1P20849 LINC01323-201ENST00000486767 576 ntTSL 3 BASIC14.3□□□□□ -0.12
COL9A1P20849 AC004889.1-201ENST00000498693 856 ntTSL 5 BASIC14.3□□□□□ -0.12
COL9A1P20849 AC138781.1-201ENST00000501322 505 ntTSL 3 BASIC14.3□□□□□ -0.12
COL9A1P20849 RASGRF2-AS1-202ENST00000505694 535 ntTSL 3 BASIC14.3□□□□□ -0.12
COL9A1P20849 AC139491.3-201ENST00000509643 684 ntTSL 3 BASIC14.3□□□□□ -0.12
COL9A1P20849 AC140125.1-201ENST00000515739 684 ntTSL 5 BASIC14.3□□□□□ -0.12
COL9A1P20849 CRADD-205ENST00000548483 1056 ntTSL 2 BASIC14.3□□□□□ -0.12
COL9A1P20849 SEPT14P19-201ENST00000587432 336 ntTSL 2 BASIC14.3□□□□□ -0.12
COL9A1P20849 ZNF93-205ENST00000591366 590 ntTSL 3 BASIC14.3□□□□□ -0.12
COL9A1P20849 MIR6074-201ENST00000612054 107 ntBASIC14.3□□□□□ -0.12
COL9A1P20849 Metazoa_SRP.144-201ENST00000617007 311 ntBASIC14.3□□□□□ -0.12
COL9A1P20849 LINC02498-201ENST00000635390 1065 ntTSL 5 BASIC14.3□□□□□ -0.12
COL9A1P20849 ATL3-203ENST00000538786 1920 ntAPPRIS ALT2 TSL 2 BASIC14.3□□□□□ -0.12
COL9A1P20849 SASH3-201ENST00000356892 2626 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
COL9A1P20849 WDR81-204ENST00000419248 3315 ntTSL 2 BASIC14.3□□□□□ -0.12
COL9A1P20849 ZSCAN21-201ENST00000292450 2005 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
COL9A1P20849 C3orf62-201ENST00000343010 4235 ntAPPRIS P2 TSL 1 (best) BASIC14.3□□□□□ -0.12
COL9A1P20849 SEC13-202ENST00000350697 1425 ntAPPRIS P2 TSL 1 (best) BASIC14.3□□□□□ -0.12
COL9A1P20849 KRT8P18-201ENST00000413425 1445 ntBASIC14.3□□□□□ -0.12
COL9A1P20849 BRSK1-206ENST00000590333 2977 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
COL9A1P20849 ST3GAL2-201ENST00000342907 4450 ntAPPRIS P1 TSL 5 BASIC14.3□□□□□ -0.12
COL9A1P20849 IFNA6-202ENST00000380210 1544 ntAPPRIS P1 BASIC14.3□□□□□ -0.12
COL9A1P20849 TGFBR2-201ENST00000295754 4621 ntAPPRIS P3 TSL 1 (best) BASIC14.3□□□□□ -0.12
COL9A1P20849 NTRK2-206ENST00000376213 5560 ntAPPRIS ALT1 TSL 5 BASIC14.3□□□□□ -0.12
COL9A1P20849 COL2A1-202ENST00000380518 5071 ntAPPRIS ALT1 TSL 1 (best) BASIC14.3□□□□□ -0.12
COL9A1P20849 C14orf180-203ENST00000557649 2551 ntAPPRIS P3 TSL 1 (best) BASIC14.29□□□□□ -0.12
COL9A1P20849 COPS7A-201ENST00000229251 1721 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
COL9A1P20849 FAM208A-201ENST00000355628 5239 ntAPPRIS ALT2 TSL 1 (best) BASIC14.29□□□□□ -0.12
COL9A1P20849 MCF2L-232ENST00000535094 3752 ntAPPRIS ALT2 TSL 2 BASIC14.29□□□□□ -0.12
COL9A1P20849 NRIP1-203ENST00000400202 7671 ntAPPRIS P1 TSL 5 BASIC14.29□□□□□ -0.12
COL9A1P20849 CEP76-201ENST00000262127 2939 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
COL9A1P20849 ZNF587-203ENST00000423137 1974 ntAPPRIS ALT2 TSL 1 (best) BASIC14.29□□□□□ -0.12
COL9A1P20849 SLC6A13-203ENST00000445055 1950 ntTSL 2 BASIC14.29□□□□□ -0.12
COL9A1P20849 RER1-203ENST00000378513 3000 ntTSL 3 BASIC14.29□□□□□ -0.12
COL9A1P20849 AZGP1-202ENST00000411734 2027 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
COL9A1P20849 CDKN2B-AS1-208ENST00000580576 2175 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
COL9A1P20849 SLC29A3-201ENST00000373189 2257 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
COL9A1P20849 PDE1B-201ENST00000243052 3444 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
COL9A1P20849 LEF1-202ENST00000379951 3477 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
COL9A1P20849 MYB-242ENST00000618728 3545 ntTSL 5 BASIC14.29□□□□□ -0.12
COL9A1P20849 BRF1-205ENST00000440513 2368 ntTSL 2 BASIC14.29□□□□□ -0.12
COL9A1P20849 OR5B12-201ENST00000302572 1054 ntAPPRIS P1 BASIC14.29□□□□□ -0.12
COL9A1P20849 DERL3-202ENST00000318109 860 ntAPPRIS P3 TSL 1 (best) BASIC14.29□□□□□ -0.12
COL9A1P20849 POP5-201ENST00000341039 913 ntTSL 2 BASIC14.29□□□□□ -0.12
COL9A1P20849 H3F3A-203ENST00000366815 1088 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
COL9A1P20849 BPIFA4P-201ENST00000375465 1203 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
COL9A1P20849 MIR1249-201ENST00000408671 66 ntBASIC14.29□□□□□ -0.12
Retrieved 100 of 98,524 protein–RNA pairs in 66.1 ms