Protein–RNA interactions for Protein: P06340

HLA-DOA, HLA class II histocompatibility antigen, DO alpha chain, humanhuman

Predictions only

Length 250 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DOAP06340 STAG3L1-204ENST00000619870 1192 ntTSL 2 BASIC16.37■□□□□ 0.21
HLA-DOAP06340 AC079325.2-201ENST00000641710 606 ntAPPRIS P5 BASIC16.37■□□□□ 0.21
HLA-DOAP06340 TRIM13-202ENST00000378182 7249 ntAPPRIS P3 TSL 1 (best) BASIC16.37■□□□□ 0.21
HLA-DOAP06340 CDH20-201ENST00000262717 3882 ntAPPRIS P1 TSL 2 BASIC16.37■□□□□ 0.21
HLA-DOAP06340 PRELP-201ENST00000343110 5747 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
HLA-DOAP06340 TIGD1-201ENST00000408957 2625 ntAPPRIS P1 BASIC16.37■□□□□ 0.21
HLA-DOAP06340 RNF123-203ENST00000433785 1555 ntTSL 5 BASIC16.37■□□□□ 0.21
HLA-DOAP06340 SYT5-201ENST00000354308 3792 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
HLA-DOAP06340 PWP2-201ENST00000291576 3297 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
HLA-DOAP06340 FERMT3-202ENST00000345728 2481 ntAPPRIS ALT1 TSL 1 (best) BASIC16.37■□□□□ 0.21
HLA-DOAP06340 AL109809.1-201ENST00000418979 1367 ntBASIC16.37■□□□□ 0.21
HLA-DOAP06340 BAIAP3-216ENST00000628027 4732 ntTSL 5 BASIC16.37■□□□□ 0.21
HLA-DOAP06340 ST3GAL3-208ENST00000361392 2243 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
HLA-DOAP06340 AL928654.5-201ENST00000624831 2501 ntBASIC16.37■□□□□ 0.21
HLA-DOAP06340 EOMES-201ENST00000295743 3386 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
HLA-DOAP06340 PHKG1-201ENST00000297373 1431 ntAPPRIS P2 TSL 1 (best) BASIC16.36■□□□□ 0.21
HLA-DOAP06340 LINC01215-201ENST00000607746 2592 ntTSL 3 BASIC16.36■□□□□ 0.21
HLA-DOAP06340 GLIPR1L2-201ENST00000320460 1729 ntAPPRIS P3 TSL 1 (best) BASIC16.36■□□□□ 0.21
HLA-DOAP06340 GNG4-202ENST00000366598 1721 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
HLA-DOAP06340 ADAMTS13-205ENST00000371916 4330 ntTSL 5 BASIC16.36■□□□□ 0.21
HLA-DOAP06340 MROH6-201ENST00000398882 3469 ntAPPRIS P2 TSL 5 BASIC16.36■□□□□ 0.21
HLA-DOAP06340 WWC2-201ENST00000403733 8826 ntAPPRIS P1 TSL 5 BASIC16.36■□□□□ 0.21
HLA-DOAP06340 AF013593.1-201ENST00000458074 1487 ntBASIC16.36■□□□□ 0.21
HLA-DOAP06340 CETP-201ENST00000200676 1791 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
HLA-DOAP06340 SELENBP1-208ENST00000447402 1530 ntTSL 2 BASIC16.36■□□□□ 0.21
HLA-DOAP06340 TMPO-203ENST00000343315 2465 ntTSL 5 BASIC16.36■□□□□ 0.21
HLA-DOAP06340 TBL3-208ENST00000615855 2472 ntTSL 5 BASIC16.36■□□□□ 0.21
HLA-DOAP06340 ZEB2-225ENST00000558170 4012 ntAPPRIS P2 TSL 1 (best) BASIC16.36■□□□□ 0.21
HLA-DOAP06340 PNPLA3-201ENST00000216180 2805 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
HLA-DOAP06340 MUM1-201ENST00000415183 2837 ntAPPRIS ALT2 TSL 1 (best) BASIC16.36■□□□□ 0.21
HLA-DOAP06340 MORN2-201ENST00000340556 741 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
HLA-DOAP06340 FAM3B-201ENST00000357985 1088 ntAPPRIS P3 TSL 1 (best) BASIC16.36■□□□□ 0.21
HLA-DOAP06340 HMGCLL1-203ENST00000370850 1171 ntTSL 2 BASIC16.36■□□□□ 0.21
HLA-DOAP06340 RGR-203ENST00000372092 868 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
HLA-DOAP06340 UQCC2-201ENST00000374214 432 ntTSL 5 BASIC16.36■□□□□ 0.21
HLA-DOAP06340 IGHV5-51-201ENST00000390626 410 ntAPPRIS P1 BASIC16.36■□□□□ 0.21
HLA-DOAP06340 HIGD1A-203ENST00000430190 741 ntTSL 2 BASIC16.36■□□□□ 0.21
HLA-DOAP06340 AC079250.1-201ENST00000456046 531 ntBASIC16.36■□□□□ 0.21
HLA-DOAP06340 MUSTN1-202ENST00000486659 622 ntTSL 2 BASIC16.36■□□□□ 0.21
HLA-DOAP06340 AC105390.1-201ENST00000511330 560 ntTSL 4 BASIC16.36■□□□□ 0.21
HLA-DOAP06340 RMDN1-218ENST00000523911 950 ntTSL 2 BASIC16.36■□□□□ 0.21
HLA-DOAP06340 PRB3-202ENST00000538488 1283 ntAPPRIS P5 TSL 5 BASIC16.36■□□□□ 0.21
HLA-DOAP06340 MYOZ3-209ENST00000615557 1031 ntTSL 2 BASIC16.36■□□□□ 0.21
HLA-DOAP06340 AC244250.3-201ENST00000620749 366 ntBASIC16.36■□□□□ 0.21
HLA-DOAP06340 GJD2-201ENST00000290374 2889 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
HLA-DOAP06340 TNPO2-202ENST00000425528 5122 ntAPPRIS P4 TSL 5 BASIC16.36■□□□□ 0.21
HLA-DOAP06340 TMUB2-202ENST00000357984 1921 ntAPPRIS P3 TSL 1 (best) BASIC16.36■□□□□ 0.21
HLA-DOAP06340 CELF1-201ENST00000310513 4583 ntAPPRIS ALT1 TSL 1 (best) BASIC16.36■□□□□ 0.21
HLA-DOAP06340 CDH16-201ENST00000299752 2954 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
HLA-DOAP06340 SAMD4A-204ENST00000554335 3003 ntAPPRIS P1 TSL 5 BASIC16.36■□□□□ 0.21
HLA-DOAP06340 RIC8B-202ENST00000392837 5135 ntAPPRIS ALT2 TSL 5 BASIC16.36■□□□□ 0.21
HLA-DOAP06340 NCF4-201ENST00000248899 1396 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
HLA-DOAP06340 DENND5B-202ENST00000389082 9470 ntAPPRIS P1 TSL 5 BASIC16.36■□□□□ 0.21
HLA-DOAP06340 NEAT1-201ENST00000499732 1811 ntTSL 2 BASIC16.35■□□□□ 0.21
HLA-DOAP06340 TELO2-201ENST00000262319 3314 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
HLA-DOAP06340 YTHDF3-205ENST00000539294 5163 ntAPPRIS P2 TSL 1 (best) BASIC16.35■□□□□ 0.21
HLA-DOAP06340 EPM2A-218ENST00000639465 2203 ntTSL 5 BASIC16.35■□□□□ 0.21
HLA-DOAP06340 PRUNE1-205ENST00000368937 1850 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
HLA-DOAP06340 PML-208ENST00000436891 3010 ntAPPRIS ALT2 TSL 5 BASIC16.35■□□□□ 0.21
HLA-DOAP06340 AC245052.4-201ENST00000452097 4158 ntTSL 2 BASIC16.35■□□□□ 0.21
HLA-DOAP06340 RBFOX3-203ENST00000580155 1519 ntAPPRIS P2 TSL 2 BASIC16.35■□□□□ 0.21
HLA-DOAP06340 CCNE2-201ENST00000308108 2724 ntAPPRIS P1 TSL 5 BASIC16.35■□□□□ 0.21
HLA-DOAP06340 HNRNPU-201ENST00000283179 3120 ntAPPRIS ALT2 TSL 5 BASIC16.35■□□□□ 0.21
HLA-DOAP06340 TMPRSS13-203ENST00000524993 1950 ntAPPRIS P3 TSL 1 (best) BASIC16.35■□□□□ 0.21
HLA-DOAP06340 EVC2-201ENST00000310917 4828 ntAPPRIS ALT2 TSL 1 (best) BASIC16.35■□□□□ 0.21
HLA-DOAP06340 NUDT2-201ENST00000346365 960 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
HLA-DOAP06340 NUDT2-202ENST00000379155 1002 ntAPPRIS P1 TSL 3 BASIC16.35■□□□□ 0.21
HLA-DOAP06340 MIR1227-201ENST00000408484 88 ntBASIC16.35■□□□□ 0.21
HLA-DOAP06340 MIR1301-201ENST00000408518 82 ntBASIC16.35■□□□□ 0.21
HLA-DOAP06340 AL355537.2-201ENST00000453367 375 ntTSL 2 BASIC16.35■□□□□ 0.21
HLA-DOAP06340 SOX2-OT-209ENST00000485035 561 ntTSL 4 BASIC16.35■□□□□ 0.21
HLA-DOAP06340 CD44-224ENST00000526669 870 ntTSL 5 BASIC16.35■□□□□ 0.21
HLA-DOAP06340 LINC02369-202ENST00000540745 801 ntTSL 5 BASIC16.35■□□□□ 0.21
HLA-DOAP06340 MIR3940-201ENST00000579148 102 ntBASIC16.35■□□□□ 0.21
HLA-DOAP06340 SEPT14P19-201ENST00000587432 336 ntTSL 2 BASIC16.35■□□□□ 0.21
HLA-DOAP06340 AC005357.2-202ENST00000590507 1060 ntBASIC16.35■□□□□ 0.21
HLA-DOAP06340 SOX2-OT-222ENST00000595084 853 ntTSL 5 BASIC16.35■□□□□ 0.21
HLA-DOAP06340 SOX2-OT-232ENST00000600386 792 ntTSL 5 BASIC16.35■□□□□ 0.21
HLA-DOAP06340 CSTP2-201ENST00000610599 398 ntBASIC16.35■□□□□ 0.21
HLA-DOAP06340 NUDT2-204ENST00000618590 825 ntAPPRIS P1 TSL 3 BASIC16.35■□□□□ 0.21
HLA-DOAP06340 PSMA6-215ENST00000622405 978 ntTSL 2 BASIC16.35■□□□□ 0.21
HLA-DOAP06340 PSMA6-217ENST00000628955 364 ntTSL 5 BASIC16.35■□□□□ 0.21
HLA-DOAP06340 MEFV-203ENST00000536379 1713 ntAPPRIS ALT2 TSL 5 BASIC16.35■□□□□ 0.21
HLA-DOAP06340 CATSPERE-202ENST00000366533 3019 ntAPPRIS P3 TSL 1 (best) BASIC16.35■□□□□ 0.21
HLA-DOAP06340 GPSM1-205ENST00000440944 3633 ntAPPRIS P2 TSL 5 BASIC16.35■□□□□ 0.21
HLA-DOAP06340 DENND4C-209ENST00000602925 6831 ntAPPRIS P1 TSL 5 BASIC16.35■□□□□ 0.21
HLA-DOAP06340 AC009542.1-201ENST00000412549 1810 ntTSL 2 BASIC16.35■□□□□ 0.21
HLA-DOAP06340 MPP6-202ENST00000396475 3848 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
HLA-DOAP06340 TRIM7-203ENST00000393315 2851 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
HLA-DOAP06340 NFATC1-218ENST00000592223 2531 ntAPPRIS ALT2 TSL 1 (best) BASIC16.35■□□□□ 0.21
HLA-DOAP06340 OXSM-201ENST00000280701 1519 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
HLA-DOAP06340 COQ4-201ENST00000300452 1548 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
HLA-DOAP06340 CASC3-201ENST00000264645 4116 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
HLA-DOAP06340 B3GAT1-203ENST00000524765 5737 ntAPPRIS P1 TSL 2 BASIC16.34■□□□□ 0.21
HLA-DOAP06340 FADS1-206ENST00000460649 1559 ntTSL 2 BASIC16.34■□□□□ 0.21
HLA-DOAP06340 Z98885.2-201ENST00000565177 1567 ntTSL 2 BASIC16.34■□□□□ 0.21
HLA-DOAP06340 OS9-220ENST00000552285 2135 ntAPPRIS ALT2 TSL 1 (best) BASIC16.34■□□□□ 0.21
HLA-DOAP06340 DKFZP434A062-201ENST00000573103 5021 ntBASIC16.34■□□□□ 0.21
HLA-DOAP06340 AC040160.2-201ENST00000623816 1675 ntBASIC16.34■□□□□ 0.21
HLA-DOAP06340 ARHGAP4-203ENST00000370028 3372 ntAPPRIS ALT2 TSL 1 (best) BASIC16.34■□□□□ 0.21
Retrieved 100 of 98,524 protein–RNA pairs in 58.5 ms