Protein–RNA interactions for Protein: O00560

SDCBP, Syntenin-1, humanhuman

Predicted RBP Predictions only

Length 298 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBPO00560 MPV17-206ENST00000402722 827 ntTSL 3 BASIC11.98□□□□□ -0.49
SDCBPO00560 RBAK-RBAKDN-202ENST00000407184 1001 ntAPPRIS ALT2 TSL 2 BASIC11.98□□□□□ -0.49
SDCBPO00560 AC017104.1-201ENST00000415129 720 ntTSL 3 BASIC11.98□□□□□ -0.49
SDCBPO00560 RNF144A-AS1-203ENST00000426122 579 ntTSL 4 BASIC11.98□□□□□ -0.49
SDCBPO00560 AC005034.1-201ENST00000426657 489 ntBASIC11.98□□□□□ -0.49
SDCBPO00560 HOXB-AS1-201ENST00000435312 806 ntTSL 5 BASIC11.98□□□□□ -0.49
SDCBPO00560 AL807752.4-201ENST00000439076 580 ntTSL 2 BASIC11.98□□□□□ -0.49
SDCBPO00560 LILRA5-204ENST00000486742 1078 ntAPPRIS ALT2 TSL 1 (best) BASIC11.98□□□□□ -0.49
SDCBPO00560 C5orf66-202ENST00000507641 547 ntTSL 3 BASIC11.98□□□□□ -0.49
SDCBPO00560 AC105362.1-201ENST00000511234 564 ntTSL 3 BASIC11.98□□□□□ -0.49
SDCBPO00560 AC090502.1-202ENST00000515416 966 ntTSL 1 (best) BASIC11.98□□□□□ -0.49
SDCBPO00560 AC104989.1-201ENST00000519711 778 ntBASIC11.98□□□□□ -0.49
SDCBPO00560 RCE1-204ENST00000525356 1270 ntTSL 5 BASIC11.98□□□□□ -0.49
SDCBPO00560 AP002387.1-201ENST00000529369 680 ntTSL 2 BASIC11.98□□□□□ -0.49
SDCBPO00560 RBM7-207ENST00000544582 692 ntTSL 3 BASIC11.98□□□□□ -0.49
SDCBPO00560 CMTM3-212ENST00000566121 572 ntTSL 3 BASIC11.98□□□□□ -0.49
SDCBPO00560 DUX4L46-201ENST00000566845 751 ntBASIC11.98□□□□□ -0.49
SDCBPO00560 JPT2-214ENST00000569765 782 ntTSL 2 BASIC11.98□□□□□ -0.49
SDCBPO00560 AC027601.2-201ENST00000571085 805 ntTSL 5 BASIC11.98□□□□□ -0.49
SDCBPO00560 LINC01887-202ENST00000584734 860 ntTSL 3 BASIC11.98□□□□□ -0.49
SDCBPO00560 FBXL12-211ENST00000591009 1005 ntTSL 1 (best) BASIC11.98□□□□□ -0.49
SDCBPO00560 YIF1B-215ENST00000592246 936 ntTSL 3 BASIC11.98□□□□□ -0.49
SDCBPO00560 AL512343.1-201ENST00000605837 169 ntBASIC11.98□□□□□ -0.49
SDCBPO00560 MIR6720-201ENST00000611664 98 ntBASIC11.98□□□□□ -0.49
SDCBPO00560 LCN9-204ENST00000619315 528 ntAPPRIS ALT2 TSL 1 (best) BASIC11.98□□□□□ -0.49
SDCBPO00560 CR392039.2-201ENST00000623182 509 ntBASIC11.98□□□□□ -0.49
SDCBPO00560 AC008687.7-202ENST00000637404 953 ntBASIC11.98□□□□□ -0.49
SDCBPO00560 CDH8-201ENST00000299345 3728 ntTSL 5 BASIC11.98□□□□□ -0.49
SDCBPO00560 PPP1R15B-201ENST00000367188 5227 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
SDCBPO00560 OXR1-202ENST00000312046 4406 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
SDCBPO00560 PCDHB9-201ENST00000316105 4415 ntAPPRIS P1 BASIC11.98□□□□□ -0.49
SDCBPO00560 DCAF13-209ENST00000616836 2639 ntTSL 1 (best) BASIC11.98□□□□□ -0.49
SDCBPO00560 TRABD2B-202ENST00000606738 7034 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
SDCBPO00560 CR383656.2-201ENST00000548656 2254 ntBASIC11.98□□□□□ -0.49
SDCBPO00560 PGM3-201ENST00000283977 2219 ntTSL 5 BASIC11.98□□□□□ -0.49
SDCBPO00560 PCMTD1-208ENST00000544451 3697 ntTSL 1 (best) BASIC11.98□□□□□ -0.49
SDCBPO00560 TEX26-AS1-205ENST00000585870 2053 ntTSL 2 BASIC11.98□□□□□ -0.49
SDCBPO00560 PML-210ENST00000563500 4502 ntAPPRIS ALT2 TSL 1 (best) BASIC11.98□□□□□ -0.49
SDCBPO00560 GOSR2-233ENST00000640068 3103 ntTSL 5 BASIC11.97□□□□□ -0.49
SDCBPO00560 ING4-201ENST00000341550 1709 ntAPPRIS P3 TSL 1 (best) BASIC11.97□□□□□ -0.49
SDCBPO00560 STRIP2-201ENST00000249344 5115 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
SDCBPO00560 XRCC6-201ENST00000359308 2709 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
SDCBPO00560 ATXN2L-225ENST00000570200 3635 ntAPPRIS ALT2 TSL 1 (best) BASIC11.97□□□□□ -0.49
SDCBPO00560 IRS1-201ENST00000305123 9705 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
SDCBPO00560 PHB-210ENST00000511832 1509 ntTSL 2 BASIC11.97□□□□□ -0.49
SDCBPO00560 GRIA4-201ENST00000282499 5508 ntAPPRIS P1 TSL 5 BASIC11.97□□□□□ -0.49
SDCBPO00560 MTHFSD-204ENST00000546093 2451 ntTSL 2 BASIC11.97□□□□□ -0.49
SDCBPO00560 ELOVL1-201ENST00000372458 1477 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
SDCBPO00560 CTIF-202ENST00000382998 4407 ntTSL 1 (best) BASIC11.97□□□□□ -0.49
SDCBPO00560 MAPK12-203ENST00000395780 1459 ntTSL 1 (best) BASIC11.97□□□□□ -0.49
SDCBPO00560 LINC00940-201ENST00000418006 2350 ntTSL 2 BASIC11.97□□□□□ -0.49
SDCBPO00560 RPL15-213ENST00000611050 2363 ntAPPRIS P1 TSL 4 BASIC11.97□□□□□ -0.49
SDCBPO00560 PRDM16-208ENST00000514189 4236 ntAPPRIS ALT2 TSL 5 BASIC11.97□□□□□ -0.49
SDCBPO00560 CYFIP2-219ENST00000616178 4210 ntTSL 1 (best) BASIC11.97□□□□□ -0.49
SDCBPO00560 INSRR-201ENST00000368195 5101 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
SDCBPO00560 FAM212B-201ENST00000357260 5980 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
SDCBPO00560 BDNF-208ENST00000418212 4125 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
SDCBPO00560 OSCP1-204ENST00000433045 1381 ntTSL 5 BASIC11.97□□□□□ -0.49
SDCBPO00560 COG1-201ENST00000299886 3079 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
SDCBPO00560 SAMD4A-201ENST00000251091 6565 ntTSL 1 (best) BASIC11.97□□□□□ -0.49
SDCBPO00560 AC060814.4-201ENST00000594169 2163 ntBASIC11.97□□□□□ -0.49
SDCBPO00560 C19orf33-201ENST00000301246 467 ntAPPRIS P3 TSL 1 (best) BASIC11.97□□□□□ -0.49
SDCBPO00560 NCOR2-201ENST00000356219 7226 ntTSL 5 BASIC11.97□□□□□ -0.49
SDCBPO00560 DUSP23-202ENST00000368108 694 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
SDCBPO00560 MRPL43-206ENST00000370236 866 ntAPPRIS P1 TSL 2 BASIC11.97□□□□□ -0.49
SDCBPO00560 MRPL43-207ENST00000370241 824 ntTSL 5 BASIC11.97□□□□□ -0.49
SDCBPO00560 TRAPPC3-203ENST00000373163 951 ntTSL 3 BASIC11.97□□□□□ -0.49
SDCBPO00560 PEMT-203ENST00000395782 895 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
SDCBPO00560 SUMO1-204ENST00000409181 784 ntTSL 3 BASIC11.97□□□□□ -0.49
SDCBPO00560 SUMO1-207ENST00000409498 779 ntTSL 3 BASIC11.97□□□□□ -0.49
SDCBPO00560 ERBB3-202ENST00000411731 1027 ntTSL 1 (best) BASIC11.97□□□□□ -0.49
SDCBPO00560 AC016730.1-201ENST00000420828 832 ntTSL 2 BASIC11.97□□□□□ -0.49
SDCBPO00560 NAA50-208ENST00000497255 789 ntTSL 5 BASIC11.97□□□□□ -0.49
SDCBPO00560 OMP-201ENST00000529803 492 ntAPPRIS P1 BASIC11.97□□□□□ -0.49
SDCBPO00560 AP001995.1-201ENST00000531784 1157 ntTSL 4 BASIC11.97□□□□□ -0.49
SDCBPO00560 AC008050.1-201ENST00000554926 632 ntTSL 3 BASIC11.97□□□□□ -0.49
SDCBPO00560 RBM8B-201ENST00000555532 525 ntBASIC11.97□□□□□ -0.49
SDCBPO00560 CX3CL1-203ENST00000564948 563 ntTSL 3 BASIC11.97□□□□□ -0.49
SDCBPO00560 AC011479.1-202ENST00000591889 528 ntAPPRIS P1 TSL 2 BASIC11.97□□□□□ -0.49
SDCBPO00560 BCL2L12-204ENST00000594157 620 ntTSL 1 (best) BASIC11.97□□□□□ -0.49
SDCBPO00560 AC093326.2-201ENST00000640770 729 ntTSL 5 BASIC11.97□□□□□ -0.49
SDCBPO00560 DIAPH2-202ENST00000355827 3782 ntAPPRIS ALT2 TSL 5 BASIC11.97□□□□□ -0.49
SDCBPO00560 CNTNAP1-201ENST00000264638 5276 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
SDCBPO00560 LRRC17-201ENST00000249377 2002 ntTSL 1 (best) BASIC11.97□□□□□ -0.49
SDCBPO00560 PDE9A-208ENST00000398225 1963 ntTSL 1 (best) BASIC11.97□□□□□ -0.49
SDCBPO00560 RIOK3-207ENST00000581585 1966 ntTSL 2 BASIC11.97□□□□□ -0.49
SDCBPO00560 C1QTNF1-203ENST00000354124 2714 ntAPPRIS P1 TSL 4 BASIC11.97□□□□□ -0.49
SDCBPO00560 MFSD8-241ENST00000641686 4991 ntAPPRIS P1 BASIC11.97□□□□□ -0.49
SDCBPO00560 SLC25A26-202ENST00000354883 2673 ntAPPRIS P1 TSL 2 BASIC11.97□□□□□ -0.49
SDCBPO00560 NCDN-201ENST00000356090 3433 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
SDCBPO00560 TRPM4-202ENST00000427978 3444 ntTSL 1 (best) BASIC11.97□□□□□ -0.49
SDCBPO00560 ARAP3-203ENST00000508305 4927 ntTSL 2 BASIC11.97□□□□□ -0.49
SDCBPO00560 FAM187A-201ENST00000331733 3397 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
SDCBPO00560 CCDC103-204ENST00000417826 3397 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
SDCBPO00560 ADRA2B-201ENST00000620793 3371 ntAPPRIS P1 BASIC11.97□□□□□ -0.49
SDCBPO00560 AMER2-201ENST00000357816 10055 ntTSL 2 BASIC11.97□□□□□ -0.49
SDCBPO00560 CATSPERE-203ENST00000366534 3333 ntAPPRIS ALT2 TSL 2 BASIC11.97□□□□□ -0.49
SDCBPO00560 AC026271.4-201ENST00000578214 1833 ntBASIC11.97□□□□□ -0.49
SDCBPO00560 LINC00638-201ENST00000555578 2518 ntBASIC11.97□□□□□ -0.49
SDCBPO00560 RASA4CP-203ENST00000446874 3193 ntTSL 1 (best) BASIC11.97□□□□□ -0.49
Retrieved 100 of 98,524 protein–RNA pairs in 45.2 ms