Protein–RNA interactions for Protein: P19838

NFKB1, Nuclear factor NF-kappa-B p105 subunit, humanhuman

Predictions only

Length 968 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NFKB1P19838 TRIM4-201ENST00000349062 3374 ntAPPRIS ALT2 TSL 1 (best) BASIC14.26□□□□□ -0.13
NFKB1P19838 CDH3-201ENST00000264012 4929 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
NFKB1P19838 THUMPD3-AS1-202ENST00000468186 3253 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
NFKB1P19838 CNN1-201ENST00000252456 1633 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
NFKB1P19838 SETD1A-201ENST00000262519 6451 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
NFKB1P19838 KIRREL1-204ENST00000368173 7519 ntTSL 2 BASIC14.26□□□□□ -0.13
NFKB1P19838 AC015712.2-202ENST00000560068 3213 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
NFKB1P19838 ATP2B3-201ENST00000263519 6420 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
NFKB1P19838 DTX3L-201ENST00000296161 5868 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
NFKB1P19838 TSPEAR-AS1-202ENST00000451035 2108 ntTSL 5 BASIC14.26□□□□□ -0.13
NFKB1P19838 LINC00680-205ENST00000450081 1593 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
NFKB1P19838 SYBU-217ENST00000528331 2636 ntAPPRIS ALT2 TSL 1 (best) BASIC14.26□□□□□ -0.13
NFKB1P19838 CAMKK2-209ENST00000446440 2587 ntAPPRIS ALT2 TSL 1 (best) BASIC14.26□□□□□ -0.13
NFKB1P19838 NIT1-204ENST00000392190 1518 ntAPPRIS ALT1 TSL 3 BASIC14.25□□□□□ -0.13
NFKB1P19838 DCAF8L2-203ENST00000545306 2013 ntAPPRIS P1 BASIC14.25□□□□□ -0.13
NFKB1P19838 ROCK1-201ENST00000399799 9484 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
NFKB1P19838 CDCA7-203ENST00000410019 1488 ntTSL 2 BASIC14.25□□□□□ -0.13
NFKB1P19838 AC004554.1-201ENST00000422830 1468 ntBASIC14.25□□□□□ -0.13
NFKB1P19838 NDRG2-251ENST00000556147 2880 ntAPPRIS P4 TSL 5 BASIC14.25□□□□□ -0.13
NFKB1P19838 MOGAT2-201ENST00000198801 1404 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
NFKB1P19838 TARBP2-202ENST00000394357 1402 ntTSL 3 BASIC14.25□□□□□ -0.13
NFKB1P19838 SLC47A1-206ENST00000571335 1415 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
NFKB1P19838 BHLHE40-AS1-204ENST00000620618 2355 ntTSL 2 BASIC14.25□□□□□ -0.13
NFKB1P19838 GOLGA8IP-201ENST00000340249 1899 ntTSL 2 BASIC14.25□□□□□ -0.13
NFKB1P19838 NUTM2B-203ENST00000429828 3292 ntAPPRIS P2 TSL 5 BASIC14.25□□□□□ -0.13
NFKB1P19838 AC008132.1-202ENST00000342005 1389 ntBASIC14.25□□□□□ -0.13
NFKB1P19838 AC020907.1-201ENST00000616460 1350 ntBASIC14.25□□□□□ -0.13
NFKB1P19838 NRP2-201ENST00000272849 5909 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
NFKB1P19838 AL445250.1-201ENST00000641671 2259 ntBASIC14.25□□□□□ -0.13
NFKB1P19838 ZNF641-201ENST00000301042 4544 ntTSL 5 BASIC14.25□□□□□ -0.13
NFKB1P19838 MSH5-202ENST00000375740 2669 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
NFKB1P19838 FXYD6-207ENST00000527717 1799 ntAPPRIS P2 TSL 2 BASIC14.25□□□□□ -0.13
NFKB1P19838 DLX1-203ENST00000361725 2640 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
NFKB1P19838 ADCY3-202ENST00000405392 4397 ntAPPRIS ALT1 TSL 1 (best) BASIC14.25□□□□□ -0.13
NFKB1P19838 MOG-221ENST00000376917 2160 ntAPPRIS ALT2 TSL 1 (best) BASIC14.25□□□□□ -0.13
NFKB1P19838 FBXO34-201ENST00000313833 3464 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
NFKB1P19838 PNKD-203ENST00000273077 3021 ntAPPRIS P4 TSL 1 (best) BASIC14.25□□□□□ -0.13
NFKB1P19838 GALNT3-201ENST00000392701 3868 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
NFKB1P19838 TRPM1-203ENST00000542188 6004 ntAPPRIS ALT2 TSL 1 (best) BASIC14.25□□□□□ -0.13
NFKB1P19838 PQBP1-201ENST00000218224 1113 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
NFKB1P19838 SEC61B-201ENST00000223641 545 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
NFKB1P19838 ARMC7-201ENST00000245543 2126 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
NFKB1P19838 PQBP1-202ENST00000247140 664 ntTSL 3 BASIC14.25□□□□□ -0.13
NFKB1P19838 CDKN1A-202ENST00000373711 793 ntAPPRIS P1 TSL 5 BASIC14.25□□□□□ -0.13
NFKB1P19838 TCEA3-201ENST00000374601 1197 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
NFKB1P19838 PQBP1-203ENST00000376563 1056 ntAPPRIS P1 TSL 2 BASIC14.25□□□□□ -0.13
NFKB1P19838 PQBP1-204ENST00000376566 760 ntTSL 3 BASIC14.25□□□□□ -0.13
NFKB1P19838 TMEM52-203ENST00000378602 1118 ntAPPRIS ALT2 TSL 1 (best) BASIC14.25□□□□□ -0.13
NFKB1P19838 CRYBA2-202ENST00000392096 708 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
NFKB1P19838 ELK2AP-201ENST00000392510 1007 ntBASIC14.25□□□□□ -0.13
NFKB1P19838 PQBP1-205ENST00000396763 965 ntAPPRIS P1 TSL 5 BASIC14.25□□□□□ -0.13
NFKB1P19838 UPK1A-AS1-201ENST00000443196 795 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
NFKB1P19838 PQBP1-207ENST00000447146 1020 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
NFKB1P19838 APOPT1-207ENST00000477116 906 ntTSL 3 BASIC14.25□□□□□ -0.13
NFKB1P19838 AC090142.2-201ENST00000483263 416 ntBASIC14.25□□□□□ -0.13
NFKB1P19838 SEC61B-203ENST00000498603 587 ntTSL 3 BASIC14.25□□□□□ -0.13
NFKB1P19838 LINC02435-201ENST00000508291 584 ntTSL 3 BASIC14.25□□□□□ -0.13
NFKB1P19838 AGTRAP-212ENST00000510878 849 ntTSL 3 BASIC14.25□□□□□ -0.13
NFKB1P19838 POU5F1P2-201ENST00000521750 823 ntBASIC14.25□□□□□ -0.13
NFKB1P19838 TMEM223-202ENST00000525631 736 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
NFKB1P19838 RERG-205ENST00000537647 935 ntTSL 2 BASIC14.25□□□□□ -0.13
NFKB1P19838 AL049833.2-202ENST00000556773 626 ntTSL 3 BASIC14.25□□□□□ -0.13
NFKB1P19838 REC114-202ENST00000560581 833 ntAPPRIS ALT2 TSL 2 BASIC14.25□□□□□ -0.13
NFKB1P19838 NAT9-211ENST00000580632 799 ntTSL 3 BASIC14.25□□□□□ -0.13
NFKB1P19838 AC005901.1-201ENST00000592766 552 ntTSL 4 BASIC14.25□□□□□ -0.13
NFKB1P19838 XRRA1-207ENST00000527087 2505 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
NFKB1P19838 ACAN-202ENST00000439576 8840 ntAPPRIS P2 TSL 5 BASIC14.25□□□□□ -0.13
NFKB1P19838 LHFPL1-201ENST00000371968 1675 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
NFKB1P19838 TMEM123-201ENST00000361236 3321 ntAPPRIS ALT2 TSL 1 (best) BASIC14.25□□□□□ -0.13
NFKB1P19838 RCAN2-204ENST00000405162 2457 ntTSL 5 BASIC14.25□□□□□ -0.13
NFKB1P19838 MOB3C-203ENST00000371940 5725 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
NFKB1P19838 CPSF1-212ENST00000616140 4494 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
NFKB1P19838 IZUMO1-201ENST00000332955 1621 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
NFKB1P19838 KIZ-213ENST00000620891 2014 ntAPPRIS ALT2 TSL 1 (best) BASIC14.25□□□□□ -0.13
NFKB1P19838 TRPV4-202ENST00000418703 3247 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
NFKB1P19838 ZDHHC8-203ENST00000405930 3112 ntTSL 2 BASIC14.25□□□□□ -0.13
NFKB1P19838 PHB-210ENST00000511832 1509 ntTSL 2 BASIC14.25□□□□□ -0.13
NFKB1P19838 MSMO1-201ENST00000261507 2269 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
NFKB1P19838 HNRNPH1-203ENST00000393432 2279 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
NFKB1P19838 COBL-205ENST00000441453 3785 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
NFKB1P19838 MAP7D2-204ENST00000452324 2233 ntAPPRIS ALT2 TSL 2 BASIC14.25□□□□□ -0.13
NFKB1P19838 AC009542.1-201ENST00000412549 1810 ntTSL 2 BASIC14.25□□□□□ -0.13
NFKB1P19838 ANK1-202ENST00000289734 8297 ntAPPRIS ALT2 TSL 1 (best) BASIC14.24□□□□□ -0.13
NFKB1P19838 PLEKHG6-201ENST00000011684 2881 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
NFKB1P19838 SREBF1-202ENST00000355815 4253 ntAPPRIS ALT2 TSL 1 (best) BASIC14.24□□□□□ -0.13
NFKB1P19838 SPDYA-202ENST00000379579 1759 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
NFKB1P19838 WDR81-205ENST00000437219 3184 ntTSL 2 BASIC14.24□□□□□ -0.13
NFKB1P19838 EPHB3-201ENST00000330394 4236 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
NFKB1P19838 PRDM15-201ENST00000269844 4881 ntAPPRIS P3 TSL 1 (best) BASIC14.24□□□□□ -0.13
NFKB1P19838 SLC6A10P-201ENST00000330048 3846 ntTSL 2 BASIC14.24□□□□□ -0.13
NFKB1P19838 KRT36-202ENST00000393986 1707 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
NFKB1P19838 MARK2P16-201ENST00000605714 1723 ntBASIC14.24□□□□□ -0.13
NFKB1P19838 LINC01750-202ENST00000438293 3068 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
NFKB1P19838 ZNF800-203ENST00000393313 4358 ntAPPRIS P1 TSL 5 BASIC14.24□□□□□ -0.13
NFKB1P19838 CATSPERE-201ENST00000366531 3038 ntAPPRIS ALT2 TSL 2 BASIC14.24□□□□□ -0.13
NFKB1P19838 DNM2-204ENST00000408974 3013 ntAPPRIS ALT1 TSL 2 BASIC14.24□□□□□ -0.13
NFKB1P19838 NDRG4-221ENST00000563799 3014 ntAPPRIS ALT1 TSL 2 BASIC14.24□□□□□ -0.13
NFKB1P19838 FXYD3-208ENST00000604404 1322 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
NFKB1P19838 FLJ40288-201ENST00000332558 1998 ntTSL 2 BASIC14.24□□□□□ -0.13
NFKB1P19838 LINC01341-202ENST00000421003 2600 ntTSL 2 BASIC14.24□□□□□ -0.13
Retrieved 100 of 98,524 protein–RNA pairs in 352.7 ms