Protein–RNA interactions for Protein: P04233

CD74, HLA class II histocompatibility antigen gamma chain, humanhuman

Predictions only

Length 296 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CD74P04233 C17orf51-202ENST00000412778 877 ntAPPRIS ALT2 TSL 3 BASIC11.79□□□□□ -0.52
CD74P04233 RLN3-201ENST00000431365 580 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
CD74P04233 AC034228.2-201ENST00000432558 459 ntTSL 3 BASIC11.79□□□□□ -0.52
CD74P04233 LAMA4-209ENST00000453937 645 ntTSL 1 (best) BASIC11.79□□□□□ -0.52
CD74P04233 HOXB-AS3-206ENST00000474040 741 ntTSL 3 BASIC11.79□□□□□ -0.52
CD74P04233 HOXB-AS3-209ENST00000477144 743 ntTSL 5 BASIC11.79□□□□□ -0.52
CD74P04233 PRPS2-205ENST00000489404 763 ntTSL 2 BASIC11.79□□□□□ -0.52
CD74P04233 LINC02279-201ENST00000553435 737 ntTSL 5 BASIC11.79□□□□□ -0.52
CD74P04233 JMJD8-203ENST00000562824 1015 ntAPPRIS ALT2 TSL 1 (best) BASIC11.79□□□□□ -0.52
CD74P04233 AIPL1-204ENST00000570466 1196 ntTSL 1 (best) BASIC11.79□□□□□ -0.52
CD74P04233 TUBB6-213ENST00000591909 1017 ntTSL 1 (best) BASIC11.79□□□□□ -0.52
CD74P04233 AC073413.1-201ENST00000603927 732 ntBASIC11.79□□□□□ -0.52
CD74P04233 ASCC3-203ENST00000369143 3433 ntTSL 1 (best) BASIC11.79□□□□□ -0.52
CD74P04233 PPFIBP1-215ENST00000542629 3208 ntTSL 1 (best) BASIC11.79□□□□□ -0.52
CD74P04233 COBLL1-225ENST00000629362 3868 ntAPPRIS ALT2 TSL 2 BASIC11.79□□□□□ -0.52
CD74P04233 LPO-204ENST00000543544 2350 ntTSL 2 BASIC11.79□□□□□ -0.52
CD74P04233 RGS12-202ENST00000338806 3010 ntTSL 1 (best) BASIC11.79□□□□□ -0.52
CD74P04233 AC092053.3-201ENST00000641308 4975 ntBASIC11.79□□□□□ -0.52
CD74P04233 RAP2B-201ENST00000323534 8351 ntAPPRIS P1 BASIC11.79□□□□□ -0.52
CD74P04233 SLC35D1-201ENST00000235345 6162 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
CD74P04233 IGFN1-201ENST00000295591 4439 ntAPPRIS ALT2 TSL 5 BASIC11.79□□□□□ -0.52
CD74P04233 SLC46A1-208ENST00000618626 5363 ntTSL 1 (best) BASIC11.79□□□□□ -0.52
CD74P04233 PSMC4-201ENST00000157812 1591 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
CD74P04233 TVP23A-201ENST00000299866 3360 ntAPPRIS P1 TSL 2 BASIC11.79□□□□□ -0.52
CD74P04233 SRP72-205ENST00000510663 2473 ntTSL 1 (best) BASIC11.79□□□□□ -0.52
CD74P04233 NAA60-214ENST00000572584 2450 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
CD74P04233 PSMC5-209ENST00000580864 1552 ntTSL 5 BASIC11.79□□□□□ -0.52
CD74P04233 RERG-201ENST00000256953 2264 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
CD74P04233 DBF4B-202ENST00000393547 1810 ntAPPRIS ALT2 TSL 1 (best) BASIC11.79□□□□□ -0.52
CD74P04233 MSH6-214ENST00000616033 3429 ntTSL 5 BASIC11.79□□□□□ -0.52
CD74P04233 ACAP2-201ENST00000326793 7160 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
CD74P04233 CNTLN-201ENST00000380641 4871 ntAPPRIS ALT2 TSL 2 BASIC11.78□□□□□ -0.52
CD74P04233 EPB41L1-202ENST00000338074 6266 ntAPPRIS P3 TSL 1 (best) BASIC11.78□□□□□ -0.52
CD74P04233 INPP5J-208ENST00000412277 3512 ntTSL 2 BASIC11.78□□□□□ -0.52
CD74P04233 NCOR2-208ENST00000429285 8475 ntAPPRIS ALT2 TSL 1 (best) BASIC11.78□□□□□ -0.52
CD74P04233 ITFG2-201ENST00000228799 2361 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
CD74P04233 PLA1A-206ENST00000495992 1695 ntTSL 1 (best) BASIC11.78□□□□□ -0.52
CD74P04233 TPO-202ENST00000345913 3145 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
CD74P04233 PGRMC1-201ENST00000217971 1911 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
CD74P04233 OCRL-201ENST00000357121 5138 ntTSL 1 (best) BASIC11.78□□□□□ -0.52
CD74P04233 COX4I1-208ENST00000564903 1481 ntTSL 2 BASIC11.78□□□□□ -0.52
CD74P04233 PASK-204ENST00000405260 4942 ntAPPRIS P3 TSL 5 BASIC11.78□□□□□ -0.52
CD74P04233 SENP3-202ENST00000429205 2222 ntAPPRIS P1 TSL 5 BASIC11.78□□□□□ -0.52
CD74P04233 NR1H3-217ENST00000467728 2731 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
CD74P04233 FAM214B-205ENST00000488109 2999 ntAPPRIS P1 TSL 5 BASIC11.78□□□□□ -0.52
CD74P04233 AL008727.1-201ENST00000564460 4728 ntTSL 2 BASIC11.78□□□□□ -0.52
CD74P04233 UBFD1-207ENST00000567212 4727 ntAPPRIS ALT2 TSL 2 BASIC11.78□□□□□ -0.52
CD74P04233 THAP2-201ENST00000308086 5719 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
CD74P04233 TWSG1-201ENST00000262120 3756 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
CD74P04233 CPN2-201ENST00000323830 3028 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
CD74P04233 GDA-203ENST00000376986 1771 ntTSL 2 BASIC11.78□□□□□ -0.52
CD74P04233 PDE6D-201ENST00000287600 1175 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
CD74P04233 TPM2-202ENST00000360958 1189 ntAPPRIS P5 TSL 1 (best) BASIC11.78□□□□□ -0.52
CD74P04233 SPDYC-201ENST00000377185 991 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
CD74P04233 MRPL23-204ENST00000397297 613 ntTSL 2 BASIC11.78□□□□□ -0.52
CD74P04233 SKA1-202ENST00000398452 979 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
CD74P04233 AC087499.6-201ENST00000411576 835 ntBASIC11.78□□□□□ -0.52
CD74P04233 HMGN1P19-201ENST00000436976 333 ntBASIC11.78□□□□□ -0.52
CD74P04233 IQCF3-204ENST00000446775 1241 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
CD74P04233 AL139010.1-202ENST00000452528 1041 ntTSL 2 BASIC11.78□□□□□ -0.52
CD74P04233 AC093214.1-201ENST00000511688 1107 ntBASIC11.78□□□□□ -0.52
CD74P04233 SPDYE16-201ENST00000515340 858 ntAPPRIS ALT2 TSL 5 BASIC11.78□□□□□ -0.52
CD74P04233 RNA5SP486-201ENST00000515961 83 ntBASIC11.78□□□□□ -0.52
CD74P04233 AAMDC-206ENST00000526415 579 ntAPPRIS P1 TSL 2 BASIC11.78□□□□□ -0.52
CD74P04233 AC125603.2-201ENST00000546835 876 ntTSL 3 BASIC11.78□□□□□ -0.52
CD74P04233 MAP1LC3B2-202ENST00000556529 660 ntAPPRIS P1 TSL 3 BASIC11.78□□□□□ -0.52
CD74P04233 AC025279.2-201ENST00000569730 653 ntBASIC11.78□□□□□ -0.52
CD74P04233 HCFC1R1-203ENST00000572355 610 ntTSL 3 BASIC11.78□□□□□ -0.52
CD74P04233 AC099811.3-201ENST00000586351 425 ntTSL 3 BASIC11.78□□□□□ -0.52
CD74P04233 MIR6720-201ENST00000611664 98 ntBASIC11.78□□□□□ -0.52
CD74P04233 CLN3-255ENST00000637100 1284 ntTSL 5 BASIC11.78□□□□□ -0.52
CD74P04233 KIR2DL3-201ENST00000342376 1590 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
CD74P04233 EEF2KMT-201ENST00000427587 2390 ntAPPRIS P4 TSL 1 (best) BASIC11.78□□□□□ -0.52
CD74P04233 MROH2A-208ENST00000610772 5324 ntAPPRIS P2 TSL 5 BASIC11.78□□□□□ -0.52
CD74P04233 RIC8B-201ENST00000355478 3207 ntTSL 1 (best) BASIC11.78□□□□□ -0.52
CD74P04233 VPS33B-202ENST00000535906 2420 ntTSL 2 BASIC11.78□□□□□ -0.52
CD74P04233 FGFR1-207ENST00000397103 2953 ntTSL 5 BASIC11.78□□□□□ -0.52
CD74P04233 ARRDC5-201ENST00000381781 1638 ntAPPRIS P1 TSL 3 BASIC11.78□□□□□ -0.52
CD74P04233 DRD3-202ENST00000383673 1640 ntAPPRIS P3 TSL 1 (best) BASIC11.78□□□□□ -0.52
CD74P04233 TMEM26-202ENST00000399298 5151 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
CD74P04233 RIMBP2-201ENST00000261655 6321 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
CD74P04233 TDH-201ENST00000525246 1357 ntTSL 1 (best) BASIC11.78□□□□□ -0.52
CD74P04233 SLC5A11-211ENST00000569071 1919 ntTSL 5 BASIC11.78□□□□□ -0.52
CD74P04233 GRM1-202ENST00000355289 3874 ntTSL 1 (best) BASIC11.78□□□□□ -0.52
CD74P04233 HSPA2-201ENST00000247207 2767 ntAPPRIS P1 BASIC11.78□□□□□ -0.52
CD74P04233 ZNF789-201ENST00000331410 1654 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
CD74P04233 NALCN-AS1-201ENST00000457843 2846 ntTSL 2 BASIC11.78□□□□□ -0.52
CD74P04233 ANKRD49-210ENST00000544612 2268 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.52
CD74P04233 KIAA1217-209ENST00000430453 5962 ntAPPRIS ALT2 TSL 5 BASIC11.77□□□□□ -0.52
CD74P04233 KIAA1217-211ENST00000458595 5977 ntAPPRIS ALT2 TSL 1 (best) BASIC11.77□□□□□ -0.52
CD74P04233 PTOV1-214ENST00000600603 1443 ntTSL 1 (best) BASIC11.77□□□□□ -0.52
CD74P04233 S1PR1-201ENST00000305352 2909 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.52
CD74P04233 ZNF564-201ENST00000339282 2935 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.52
CD74P04233 NR3C1-204ENST00000394466 3245 ntAPPRIS ALT1 TSL 5 BASIC11.77□□□□□ -0.52
CD74P04233 SLC6A10P-201ENST00000330048 3846 ntTSL 2 BASIC11.77□□□□□ -0.52
CD74P04233 USB1-207ENST00000563149 1751 ntTSL 2 BASIC11.77□□□□□ -0.52
CD74P04233 TACC3-212ENST00000612220 1756 ntTSL 5 BASIC11.77□□□□□ -0.52
CD74P04233 USP40-208ENST00000450966 5616 ntAPPRIS P2 TSL 1 (best) BASIC11.77□□□□□ -0.52
CD74P04233 ZNF275-201ENST00000370249 5920 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.52
CD74P04233 TMPRSS4-213ENST00000522824 2052 ntAPPRIS ALT2 TSL 1 (best) BASIC11.77□□□□□ -0.52
Retrieved 100 of 98,524 protein–RNA pairs in 62.6 ms