Protein–RNA interactions for Protein: P56524

HDAC4, Histone deacetylase 4, humanhuman

Predictions only

Length 1,084 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4P56524 ANXA8L1-206ENST00000619162 1109 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
HDAC4P56524 ITGAM-202ENST00000544665 4718 ntAPPRIS ALT1 TSL 1 (best) BASIC14.68□□□□□ -0.06
HDAC4P56524 LETMD1-235ENST00000552739 1713 ntTSL 2 BASIC14.68□□□□□ -0.06
HDAC4P56524 RGMB-201ENST00000308234 4580 ntAPPRIS P2 TSL 1 (best) BASIC14.68□□□□□ -0.06
HDAC4P56524 ZNF609-202ENST00000416172 3863 ntTSL 2 BASIC14.68□□□□□ -0.06
HDAC4P56524 RERG-201ENST00000256953 2264 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
HDAC4P56524 DLG4-203ENST00000399510 3975 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
HDAC4P56524 LILRA2-203ENST00000391737 1452 ntAPPRIS ALT2 TSL 1 (best) BASIC14.68□□□□□ -0.06
HDAC4P56524 CCDC187-203ENST00000569961 3158 ntAPPRIS P2 TSL 1 (best) BASIC14.68□□□□□ -0.06
HDAC4P56524 DOCK4-206ENST00000437633 6212 ntAPPRIS P2 TSL 1 (best) BASIC14.68□□□□□ -0.06
HDAC4P56524 FOXP1-202ENST00000318789 7114 ntAPPRIS P3 TSL 1 (best) BASIC14.68□□□□□ -0.06
HDAC4P56524 FOXP1-222ENST00000615603 7140 ntTSL 5 BASIC14.68□□□□□ -0.06
HDAC4P56524 ZBTB20-215ENST00000481632 2800 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
HDAC4P56524 NRXN1-222ENST00000625672 8113 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
HDAC4P56524 SLC19A1-201ENST00000311124 3811 ntAPPRIS P3 TSL 1 (best) BASIC14.68□□□□□ -0.06
HDAC4P56524 PPP3R1-201ENST00000234310 3023 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
HDAC4P56524 POPDC2-201ENST00000264231 1679 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
HDAC4P56524 MRVI1-204ENST00000527509 2686 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
HDAC4P56524 FAM129B-202ENST00000373314 3760 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
HDAC4P56524 LIMD1-202ENST00000440097 2773 ntTSL 5 BASIC14.68□□□□□ -0.06
HDAC4P56524 TMEM173-201ENST00000330794 1771 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
HDAC4P56524 TMEM40-205ENST00000435575 1785 ntAPPRIS ALT2 TSL 2 BASIC14.68□□□□□ -0.06
HDAC4P56524 SYT4-205ENST00000590752 1765 ntTSL 2 BASIC14.68□□□□□ -0.06
HDAC4P56524 FAM230C-201ENST00000623511 1970 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
HDAC4P56524 OGFOD3-201ENST00000313056 4287 ntAPPRIS P1 TSL 2 BASIC14.67□□□□□ -0.06
HDAC4P56524 ZNF570-201ENST00000330173 5559 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
HDAC4P56524 RFESD-201ENST00000311364 2722 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
HDAC4P56524 MSRA-201ENST00000317173 1536 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
HDAC4P56524 TMEM144-209ENST00000509278 1633 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
HDAC4P56524 STK25-235ENST00000543554 2556 ntTSL 2 BASIC14.67□□□□□ -0.06
HDAC4P56524 USP17L2-201ENST00000333796 1910 ntAPPRIS P1 BASIC14.67□□□□□ -0.06
HDAC4P56524 PRSS16-203ENST00000421826 1949 ntTSL 2 BASIC14.67□□□□□ -0.06
HDAC4P56524 PCDHB16-201ENST00000609684 5001 ntAPPRIS P1 BASIC14.67□□□□□ -0.06
HDAC4P56524 PRR12-203ENST00000615927 4479 ntAPPRIS ALT2 TSL 5 BASIC14.67□□□□□ -0.06
HDAC4P56524 RHCE-202ENST00000340849 1087 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
HDAC4P56524 LINC00313-205ENST00000427188 967 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
HDAC4P56524 PSMB8-AS1-204ENST00000429600 996 ntTSL 2 BASIC14.67□□□□□ -0.06
HDAC4P56524 AL355994.3-201ENST00000437156 466 ntTSL 2 BASIC14.67□□□□□ -0.06
HDAC4P56524 RPS27L-203ENST00000439025 970 ntTSL 2 BASIC14.67□□□□□ -0.06
HDAC4P56524 UPK1A-AS1-201ENST00000443196 795 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
HDAC4P56524 AC006335.1-201ENST00000445200 547 ntBASIC14.67□□□□□ -0.06
HDAC4P56524 RPSAP15-201ENST00000448168 861 ntBASIC14.67□□□□□ -0.06
HDAC4P56524 MCPH1-AS1-201ENST00000515608 2147 ntTSL 5 BASIC14.67□□□□□ -0.06
HDAC4P56524 EEF1D-218ENST00000526838 926 ntAPPRIS ALT2 TSL 2 BASIC14.67□□□□□ -0.06
HDAC4P56524 UBE3B-206ENST00000536398 1120 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
HDAC4P56524 EIF2B1-205ENST00000539951 848 ntTSL 5 BASIC14.67□□□□□ -0.06
HDAC4P56524 TMEM14C-205ENST00000541412 1177 ntAPPRIS P1 TSL 2 BASIC14.67□□□□□ -0.06
HDAC4P56524 TMEM91-211ENST00000544232 725 ntTSL 3 BASIC14.67□□□□□ -0.06
HDAC4P56524 AL049833.2-202ENST00000556773 626 ntTSL 3 BASIC14.67□□□□□ -0.06
HDAC4P56524 NDUFB10P1-201ENST00000567319 521 ntBASIC14.67□□□□□ -0.06
HDAC4P56524 AC040162.4-201ENST00000574912 1185 ntAPPRIS P1 TSL 3 BASIC14.67□□□□□ -0.06
HDAC4P56524 TLDC2-203ENST00000602922 1179 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
HDAC4P56524 LINC01783-202ENST00000614408 828 ntBASIC14.67□□□□□ -0.06
HDAC4P56524 AP001505.2-201ENST00000616815 443 ntBASIC14.67□□□□□ -0.06
HDAC4P56524 BX284668.2-205ENST00000619677 828 ntBASIC14.67□□□□□ -0.06
HDAC4P56524 FHOD3-201ENST00000257209 4967 ntAPPRIS P3 TSL 1 (best) BASIC14.67□□□□□ -0.06
HDAC4P56524 KRT8P43-201ENST00000406052 1458 ntBASIC14.67□□□□□ -0.06
HDAC4P56524 SLC41A3-211ENST00000508835 1480 ntTSL 2 BASIC14.67□□□□□ -0.06
HDAC4P56524 COX4I1-208ENST00000564903 1481 ntTSL 2 BASIC14.67□□□□□ -0.06
HDAC4P56524 ZNF395-201ENST00000344423 4808 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
HDAC4P56524 TGFBRAP1-201ENST00000258449 2827 ntAPPRIS P1 TSL 5 BASIC14.67□□□□□ -0.06
HDAC4P56524 CPPED1-201ENST00000261660 1898 ntTSL 2 BASIC14.67□□□□□ -0.06
HDAC4P56524 CARD10-203ENST00000406271 3127 ntTSL 2 BASIC14.67□□□□□ -0.06
HDAC4P56524 GLP2R-204ENST00000574745 1882 ntTSL 2 BASIC14.67□□□□□ -0.06
HDAC4P56524 AC073548.1-201ENST00000624088 1882 ntBASIC14.67□□□□□ -0.06
HDAC4P56524 TGIF2-201ENST00000373872 3406 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
HDAC4P56524 DHTKD1-201ENST00000263035 5159 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
HDAC4P56524 SP6-202ENST00000536300 3848 ntAPPRIS P1 TSL 2 BASIC14.67□□□□□ -0.06
HDAC4P56524 AGAP12P-201ENST00000585227 2359 ntBASIC14.67□□□□□ -0.06
HDAC4P56524 PAG1-201ENST00000220597 10744 ntAPPRIS P1 TSL 2 BASIC14.67□□□□□ -0.06
HDAC4P56524 AGRN-210ENST00000620552 7394 ntTSL 5 BASIC14.67□□□□□ -0.06
HDAC4P56524 TEX264-201ENST00000341333 1340 ntAPPRIS P3 TSL 1 (best) BASIC14.66□□□□□ -0.06
HDAC4P56524 SCGN-203ENST00000612225 1402 ntTSL 5 BASIC14.66□□□□□ -0.06
HDAC4P56524 AL356275.1-201ENST00000638446 7440 ntTSL 5 BASIC14.66□□□□□ -0.06
HDAC4P56524 KCNIP1-210ENST00000636734 1613 ntTSL 5 BASIC14.66□□□□□ -0.06
HDAC4P56524 TBX6-202ENST00000395224 1803 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
HDAC4P56524 VAC14-AS1-201ENST00000398177 2145 ntTSL 2 BASIC14.66□□□□□ -0.06
HDAC4P56524 ABI2-213ENST00000424558 2240 ntTSL 2 BASIC14.66□□□□□ -0.06
HDAC4P56524 AC022028.2-201ENST00000474115 2619 ntTSL 2 BASIC14.66□□□□□ -0.06
HDAC4P56524 TPM3P9-201ENST00000424846 2920 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
HDAC4P56524 YIPF6-204ENST00000462683 6741 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
HDAC4P56524 PXDN-201ENST00000252804 6808 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
HDAC4P56524 FEM1A-201ENST00000269856 9593 ntAPPRIS P1 BASIC14.66□□□□□ -0.06
HDAC4P56524 CELF1-201ENST00000310513 4583 ntAPPRIS ALT1 TSL 1 (best) BASIC14.66□□□□□ -0.06
HDAC4P56524 GFPT2-201ENST00000253778 3093 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
HDAC4P56524 CFAP43-201ENST00000278064 2963 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
HDAC4P56524 PSAP-202ENST00000394936 2872 ntAPPRIS P2 TSL 1 (best) BASIC14.66□□□□□ -0.06
HDAC4P56524 ABCF3-201ENST00000292808 2453 ntAPPRIS ALT1 TSL 2 BASIC14.66□□□□□ -0.06
HDAC4P56524 RER1-207ENST00000488353 2469 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
HDAC4P56524 CCNC-210ENST00000520429 2473 ntAPPRIS P2 TSL 1 (best) BASIC14.66□□□□□ -0.06
HDAC4P56524 GDPD2-204ENST00000536730 2171 ntTSL 2 BASIC14.66□□□□□ -0.06
HDAC4P56524 LINC00324-201ENST00000315707 2082 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
HDAC4P56524 NOTCH1-201ENST00000277541 9371 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
HDAC4P56524 LINC01535-206ENST00000592712 1699 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
HDAC4P56524 AC093462.1-201ENST00000621167 1683 ntBASIC14.66□□□□□ -0.06
HDAC4P56524 AP4M1-204ENST00000421755 1572 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
HDAC4P56524 Z98885.2-201ENST00000565177 1567 ntTSL 2 BASIC14.66□□□□□ -0.06
HDAC4P56524 ZNF815P-201ENST00000421890 1352 ntTSL 2 BASIC14.66□□□□□ -0.06
HDAC4P56524 ARHGAP45-206ENST00000586866 4120 ntAPPRIS ALT2 TSL 1 (best) BASIC14.66□□□□□ -0.06
HDAC4P56524 COX14-201ENST00000317943 708 ntAPPRIS P1 TSL 2 BASIC14.66□□□□□ -0.06
Retrieved 100 of 98,524 protein–RNA pairs in 55.1 ms