Protein–RNA interactions for Protein: P17096

HMGA1, High mobility group protein HMG-I/HMG-Y, humanhuman

Known RBP Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1P17096 FXYD6-FXYD2-201ENST00000532984 670 ntTSL 3 BASIC14.33□□□□□ -0.12
HMGA1P17096 AC073569.2-201ENST00000551995 354 ntTSL 5 BASIC14.33□□□□□ -0.12
HMGA1P17096 RCAN2-203ENST00000371374 3327 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
HMGA1P17096 HS3ST5-201ENST00000312719 3901 ntAPPRIS P1 TSL 2 BASIC14.33□□□□□ -0.12
HMGA1P17096 TATDN3-202ENST00000366974 2389 ntAPPRIS P3 TSL 1 (best) BASIC14.33□□□□□ -0.12
HMGA1P17096 PSMC4-202ENST00000455878 1333 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
HMGA1P17096 CDK5RAP1-202ENST00000346416 2122 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
HMGA1P17096 AL365181.3-201ENST00000605886 3222 ntBASIC14.33□□□□□ -0.12
HMGA1P17096 TPO-205ENST00000382201 2956 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
HMGA1P17096 ZNF628-203ENST00000598519 3847 ntAPPRIS P2 TSL 1 (best) BASIC14.33□□□□□ -0.12
HMGA1P17096 KRT8P42-201ENST00000405771 1399 ntBASIC14.33□□□□□ -0.12
HMGA1P17096 SEPT9-208ENST00000541152 3026 ntAPPRIS ALT2 TSL 1 (best) BASIC14.33□□□□□ -0.12
HMGA1P17096 C5orf66-206ENST00000624272 2479 ntTSL 2 BASIC14.33□□□□□ -0.12
HMGA1P17096 P4HA1-205ENST00000440381 2790 ntTSL 3 BASIC14.33□□□□□ -0.12
HMGA1P17096 FAM219A-209ENST00000445726 3644 ntAPPRIS ALT1 TSL 2 BASIC14.33□□□□□ -0.12
HMGA1P17096 SETMAR-205ENST00000425863 1657 ntTSL 2 BASIC14.33□□□□□ -0.12
HMGA1P17096 PDCD6IPP2-206ENST00000566178 3351 ntTSL 5 BASIC14.33□□□□□ -0.12
HMGA1P17096 ZC3HAV1-204ENST00000471652 3182 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
HMGA1P17096 TYK2-210ENST00000529370 3176 ntTSL 2 BASIC14.32□□□□□ -0.12
HMGA1P17096 ETNPPL-202ENST00000411864 2028 ntAPPRIS ALT1 TSL 1 (best) BASIC14.32□□□□□ -0.12
HMGA1P17096 VDAC2-202ENST00000313132 1467 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
HMGA1P17096 FAM156A-208ENST00000615092 2098 ntAPPRIS P2 TSL 5 BASIC14.32□□□□□ -0.12
HMGA1P17096 CCNG1-202ENST00000393929 2366 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
HMGA1P17096 SLC2A11-223ENST00000611880 3264 ntTSL 2 BASIC14.32□□□□□ -0.12
HMGA1P17096 CNNM2-203ENST00000433628 3857 ntAPPRIS ALT1 TSL 2 BASIC14.32□□□□□ -0.12
HMGA1P17096 ZNF800-201ENST00000265827 4203 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
HMGA1P17096 FAM153C-201ENST00000398106 1510 ntAPPRIS ALT2 TSL 2 BASIC14.32□□□□□ -0.12
HMGA1P17096 GSDMA-201ENST00000301659 2164 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
HMGA1P17096 TMPRSS6-203ENST00000406725 3122 ntAPPRIS ALT2 TSL 1 (best) BASIC14.32□□□□□ -0.12
HMGA1P17096 FARP2-201ENST00000264042 4051 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
HMGA1P17096 PEX5L-211ENST00000472994 2235 ntAPPRIS ALT2 TSL 2 BASIC14.32□□□□□ -0.12
HMGA1P17096 TSC22D3-202ENST00000372382 1216 ntTSL 3 BASIC14.32□□□□□ -0.12
HMGA1P17096 SKOR2-201ENST00000400404 891 ntAPPRIS P3 TSL 1 (best) BASIC14.32□□□□□ -0.12
HMGA1P17096 AC004973.1-201ENST00000413240 635 ntTSL 3 BASIC14.32□□□□□ -0.12
HMGA1P17096 ELFN1-AS1-201ENST00000415399 636 ntTSL 5 BASIC14.32□□□□□ -0.12
HMGA1P17096 AL080243.1-201ENST00000423293 1060 ntBASIC14.32□□□□□ -0.12
HMGA1P17096 MED19-202ENST00000431606 1203 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
HMGA1P17096 AL132657.1-201ENST00000432530 712 ntTSL 3 BASIC14.32□□□□□ -0.12
HMGA1P17096 AL353150.1-201ENST00000456944 583 ntTSL 2 BASIC14.32□□□□□ -0.12
HMGA1P17096 ALG1L7P-201ENST00000502317 768 ntBASIC14.32□□□□□ -0.12
HMGA1P17096 TBC1D3P6-201ENST00000505954 962 ntBASIC14.32□□□□□ -0.12
HMGA1P17096 LINC01481-204ENST00000550216 494 ntTSL 2 BASIC14.32□□□□□ -0.12
HMGA1P17096 TGFB3-204ENST00000556285 1280 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
HMGA1P17096 SCAMP5-216ENST00000568081 710 ntTSL 2 BASIC14.32□□□□□ -0.12
HMGA1P17096 AP005212.2-201ENST00000584979 510 ntBASIC14.32□□□□□ -0.12
HMGA1P17096 PEBP1P2-201ENST00000603980 558 ntBASIC14.32□□□□□ -0.12
HMGA1P17096 MECP2-213ENST00000622433 1071 ntTSL 5 BASIC14.32□□□□□ -0.12
HMGA1P17096 LINC01002-234ENST00000633808 848 ntTSL 5 BASIC14.32□□□□□ -0.12
HMGA1P17096 GUCY2EP-203ENST00000531117 1918 ntBASIC14.32□□□□□ -0.12
HMGA1P17096 KRT4-204ENST00000551956 2576 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
HMGA1P17096 PXN-221ENST00000637617 3246 ntAPPRIS ALT2 TSL 5 BASIC14.32□□□□□ -0.12
HMGA1P17096 NTF3-202ENST00000423158 1336 ntAPPRIS ALT1 TSL 1 (best) BASIC14.32□□□□□ -0.12
HMGA1P17096 VANGL2-201ENST00000368061 5340 ntAPPRIS P1 TSL 2 BASIC14.32□□□□□ -0.12
HMGA1P17096 NUCB1-201ENST00000405315 2668 ntAPPRIS P2 TSL 1 (best) BASIC14.32□□□□□ -0.12
HMGA1P17096 LINC00937-207ENST00000544461 3033 ntTSL 2 BASIC14.32□□□□□ -0.12
HMGA1P17096 SLC16A1-207ENST00000538576 4374 ntAPPRIS P1 TSL 2 BASIC14.32□□□□□ -0.12
HMGA1P17096 PRR30-201ENST00000335524 2008 ntAPPRIS P2 TSL 1 (best) BASIC14.32□□□□□ -0.12
HMGA1P17096 HDAC2-206ENST00000519108 2000 ntTSL 2 BASIC14.32□□□□□ -0.12
HMGA1P17096 MAP3K3-203ENST00000577395 2016 ntAPPRIS ALT1 TSL 1 (best) BASIC14.32□□□□□ -0.12
HMGA1P17096 SYNRG-223ENST00000616179 4050 ntAPPRIS ALT2 TSL 5 BASIC14.32□□□□□ -0.12
HMGA1P17096 DPYSL4-201ENST00000338492 2729 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
HMGA1P17096 NFATC4-210ENST00000554050 3057 ntAPPRIS ALT2 TSL 1 (best) BASIC14.32□□□□□ -0.12
HMGA1P17096 B3GNTL1-201ENST00000320865 1383 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
HMGA1P17096 SERPINA13P-201ENST00000469935 1718 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
HMGA1P17096 PGAP2-201ENST00000278243 2062 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
HMGA1P17096 DANT2-201ENST00000430756 2079 ntTSL 3 BASIC14.32□□□□□ -0.12
HMGA1P17096 AL928921.2-201ENST00000641325 2442 ntBASIC14.32□□□□□ -0.12
HMGA1P17096 RNF26-201ENST00000311413 2787 ntAPPRIS P1 BASIC14.32□□□□□ -0.12
HMGA1P17096 NOS1AP-205ENST00000493151 5559 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
HMGA1P17096 CDH20-201ENST00000262717 3882 ntAPPRIS P1 TSL 2 BASIC14.32□□□□□ -0.12
HMGA1P17096 FRMPD4-201ENST00000380682 8465 ntAPPRIS P2 TSL 1 (best) BASIC14.32□□□□□ -0.12
HMGA1P17096 ABCF3-201ENST00000292808 2453 ntAPPRIS ALT1 TSL 2 BASIC14.32□□□□□ -0.12
HMGA1P17096 DAGLA-201ENST00000257215 5757 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
HMGA1P17096 COL18A1-203ENST00000359759 6586 ntAPPRIS ALT2 TSL 5 BASIC14.31□□□□□ -0.12
HMGA1P17096 SLC44A2-201ENST00000335757 3671 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
HMGA1P17096 AC024075.2-201ENST00000598112 1473 ntBASIC14.31□□□□□ -0.12
HMGA1P17096 RIOX2-202ENST00000360258 2232 ntAPPRIS P3 TSL 1 (best) BASIC14.31□□□□□ -0.12
HMGA1P17096 RDH12-203ENST00000551171 1879 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
HMGA1P17096 ACSL1-201ENST00000281455 3832 ntAPPRIS P3 TSL 1 (best) BASIC14.31□□□□□ -0.12
HMGA1P17096 ARHGEF1-202ENST00000347545 3091 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
HMGA1P17096 ATP5A1-201ENST00000282050 1945 ntAPPRIS P1 TSL 5 BASIC14.31□□□□□ -0.12
HMGA1P17096 BCAR1-205ENST00000420641 2725 ntAPPRIS ALT2 TSL 2 BASIC14.31□□□□□ -0.12
HMGA1P17096 SHANK1-204ENST00000391814 6622 ntAPPRIS ALT2 TSL 5 BASIC14.31□□□□□ -0.12
HMGA1P17096 TUNAR-201ENST00000503525 3197 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
HMGA1P17096 ABR-228ENST00000574437 3196 ntTSL 5 BASIC14.31□□□□□ -0.12
HMGA1P17096 SHROOM1-208ENST00000617339 3638 ntAPPRIS ALT2 TSL 5 BASIC14.31□□□□□ -0.12
HMGA1P17096 MOCS1-205ENST00000373195 2852 ntTSL 2 BASIC14.31□□□□□ -0.12
HMGA1P17096 KIF13B-206ENST00000524189 8745 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
HMGA1P17096 AL359075.1-201ENST00000476232 2921 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
HMGA1P17096 PRKN-204ENST00000366896 2514 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
HMGA1P17096 TNNT3-201ENST00000278317 1210 ntAPPRIS P3 TSL 5 BASIC14.31□□□□□ -0.12
HMGA1P17096 PDLIM5-203ENST00000359265 1189 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
HMGA1P17096 C11orf49-203ENST00000378618 1166 ntTSL 5 BASIC14.31□□□□□ -0.12
HMGA1P17096 TNNT3-207ENST00000381589 1060 ntAPPRIS ALT2 TSL 1 (best) BASIC14.31□□□□□ -0.12
HMGA1P17096 SIX3-AS1-201ENST00000419364 844 ntTSL 2 BASIC14.31□□□□□ -0.12
HMGA1P17096 IGLV9-49-201ENST00000427632 409 ntAPPRIS P1 BASIC14.31□□□□□ -0.12
HMGA1P17096 TCERG1L-AS1-201ENST00000436942 472 ntTSL 2 BASIC14.31□□□□□ -0.12
HMGA1P17096 ANKRD2-204ENST00000455090 1072 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
HMGA1P17096 RN7SL147P-201ENST00000487345 298 ntBASIC14.31□□□□□ -0.12
HMGA1P17096 AL928742.1-201ENST00000497397 548 ntTSL 4 BASIC14.31□□□□□ -0.12
Retrieved 100 of 98,524 protein–RNA pairs in 53.6 ms