Protein–RNA interactions for Protein: Q96LD4

TRIM47, Tripartite motif-containing protein 47, humanhuman

Predictions only

Length 638 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM47Q96LD4 PTPRN-201ENST00000295718 3784 ntAPPRIS P3 TSL 1 (best) BASIC16.42■□□□□ 0.22
TRIM47Q96LD4 AC007388.1-204ENST00000449569 2517 ntTSL 2 BASIC16.42■□□□□ 0.22
TRIM47Q96LD4 RPS6KC1-201ENST00000366959 5454 ntAPPRIS ALT1 TSL 2 BASIC16.42■□□□□ 0.22
TRIM47Q96LD4 RPS6KC1-202ENST00000366960 5490 ntAPPRIS P3 TSL 1 (best) BASIC16.42■□□□□ 0.22
TRIM47Q96LD4 HIST1H1D-201ENST00000244534 666 ntAPPRIS P1 BASIC16.42■□□□□ 0.22
TRIM47Q96LD4 OR2V1-201ENST00000329365 948 ntAPPRIS P1 BASIC16.42■□□□□ 0.22
TRIM47Q96LD4 TMEM95-201ENST00000330767 1169 ntAPPRIS P3 TSL 1 (best) BASIC16.42■□□□□ 0.22
TRIM47Q96LD4 RNVU1-8-201ENST00000364272 125 ntBASIC16.42■□□□□ 0.22
TRIM47Q96LD4 BCAS2-201ENST00000369541 1299 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
TRIM47Q96LD4 TAF8-202ENST00000372978 794 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
TRIM47Q96LD4 CFAP36-203ENST00000403007 759 ntTSL 2 BASIC16.42■□□□□ 0.22
TRIM47Q96LD4 AC010186.1-201ENST00000546259 532 ntTSL 2 BASIC16.42■□□□□ 0.22
TRIM47Q96LD4 SRP14-204ENST00000558720 780 ntTSL 2 BASIC16.42■□□□□ 0.22
TRIM47Q96LD4 NAA38-205ENST00000575771 852 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
TRIM47Q96LD4 MIR5001-201ENST00000580185 100 ntBASIC16.42■□□□□ 0.22
TRIM47Q96LD4 AP005264.1-201ENST00000586226 733 ntTSL 3 BASIC16.42■□□□□ 0.22
TRIM47Q96LD4 APOC4-202ENST00000592954 615 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
TRIM47Q96LD4 AL078590.3-205ENST00000606039 465 ntTSL 5 BASIC16.42■□□□□ 0.22
TRIM47Q96LD4 ANKRD20A21P-201ENST00000611282 517 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
TRIM47Q96LD4 AL591471.1-201ENST00000621855 229 ntBASIC16.42■□□□□ 0.22
TRIM47Q96LD4 TMEM189-202ENST00000371652 7714 ntAPPRIS P3 TSL 1 (best) BASIC16.42■□□□□ 0.22
TRIM47Q96LD4 AFAP1L1-205ENST00000515000 2319 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
TRIM47Q96LD4 MRPL55-205ENST00000366731 1423 ntTSL 2 BASIC16.42■□□□□ 0.22
TRIM47Q96LD4 C1R-201ENST00000535233 2211 ntTSL 2 BASIC16.42■□□□□ 0.22
TRIM47Q96LD4 GPD1-205ENST00000548814 1591 ntTSL 2 BASIC16.42■□□□□ 0.22
TRIM47Q96LD4 CNKSR2-203ENST00000425654 5668 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
TRIM47Q96LD4 LETMD1-201ENST00000262055 2112 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
TRIM47Q96LD4 MYADML-201ENST00000474610 2147 ntBASIC16.42■□□□□ 0.22
TRIM47Q96LD4 FAM163A-201ENST00000341785 2909 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
TRIM47Q96LD4 CAMK2D-204ENST00000394522 2696 ntAPPRIS ALT1 TSL 1 (best) BASIC16.42■□□□□ 0.22
TRIM47Q96LD4 NMNAT3-202ENST00000339837 1863 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
TRIM47Q96LD4 POLR1E-202ENST00000377798 1868 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
TRIM47Q96LD4 BSDC1-203ENST00000419121 1473 ntTSL 2 BASIC16.42■□□□□ 0.22
TRIM47Q96LD4 TAB1-201ENST00000216160 3237 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
TRIM47Q96LD4 ABCG1-205ENST00000398449 2998 ntAPPRIS ALT1 TSL 1 (best) BASIC16.41■□□□□ 0.22
TRIM47Q96LD4 TAGLN2-202ENST00000368096 1603 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
TRIM47Q96LD4 ELAC2-201ENST00000338034 3148 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
TRIM47Q96LD4 INPPL1-213ENST00000541756 4649 ntTSL 5 BASIC16.41■□□□□ 0.22
TRIM47Q96LD4 NAA60-202ENST00000407558 2735 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
TRIM47Q96LD4 ZNF782-205ENST00000481138 4213 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
TRIM47Q96LD4 ARMCX6-207ENST00000538627 1758 ntAPPRIS P1 TSL 2 BASIC16.41■□□□□ 0.22
TRIM47Q96LD4 DDR1-271ENST00000513240 2882 ntAPPRIS ALT2 TSL 5 BASIC16.41■□□□□ 0.22
TRIM47Q96LD4 SGK2-201ENST00000341458 2498 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
TRIM47Q96LD4 CDH1-213ENST00000612417 2068 ntTSL 5 BASIC16.41■□□□□ 0.22
TRIM47Q96LD4 TNPO2-202ENST00000425528 5122 ntAPPRIS P4 TSL 5 BASIC16.41■□□□□ 0.22
TRIM47Q96LD4 COL4A2-AS2-201ENST00000458403 1522 ntTSL 2 BASIC16.41■□□□□ 0.22
TRIM47Q96LD4 LINC00174-204ENST00000421767 4702 ntTSL 5 BASIC16.41■□□□□ 0.22
TRIM47Q96LD4 ABLIM2-209ENST00000505872 1680 ntAPPRIS ALT2 TSL 5 BASIC16.41■□□□□ 0.22
TRIM47Q96LD4 GATB-201ENST00000263985 2385 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
TRIM47Q96LD4 VLDLR-202ENST00000382099 3240 ntAPPRIS ALT1 TSL 1 (best) BASIC16.41■□□□□ 0.22
TRIM47Q96LD4 CDKN2C-202ENST00000371761 1220 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
TRIM47Q96LD4 DIO1-203ENST00000388876 606 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
TRIM47Q96LD4 PPM1N-205ENST00000401705 771 ntTSL 3 BASIC16.41■□□□□ 0.22
TRIM47Q96LD4 MIR1301-201ENST00000408518 82 ntBASIC16.41■□□□□ 0.22
TRIM47Q96LD4 CCL24-202ENST00000416943 585 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
TRIM47Q96LD4 HLA-DPA2-205ENST00000433582 733 ntBASIC16.41■□□□□ 0.22
TRIM47Q96LD4 AL391415.1-201ENST00000439844 400 ntTSL 3 BASIC16.41■□□□□ 0.22
TRIM47Q96LD4 AL355537.2-201ENST00000453367 375 ntTSL 2 BASIC16.41■□□□□ 0.22
TRIM47Q96LD4 AC083801.1-201ENST00000491689 358 ntBASIC16.41■□□□□ 0.22
TRIM47Q96LD4 RN7SL564P-201ENST00000496309 250 ntBASIC16.41■□□□□ 0.22
TRIM47Q96LD4 HINT1-205ENST00000508488 703 ntTSL 2 BASIC16.41■□□□□ 0.22
TRIM47Q96LD4 WDYHV1-206ENST00000523356 869 ntTSL 3 BASIC16.41■□□□□ 0.22
TRIM47Q96LD4 DIO1-204ENST00000524406 626 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
TRIM47Q96LD4 DIO1-213ENST00000532493 406 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
TRIM47Q96LD4 FAM60A-207ENST00000542983 738 ntTSL 4 BASIC16.41■□□□□ 0.22
TRIM47Q96LD4 AC103808.3-201ENST00000579714 598 ntTSL 5 BASIC16.41■□□□□ 0.22
TRIM47Q96LD4 BRSK1-203ENST00000585418 1104 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
TRIM47Q96LD4 BLACE-202ENST00000616210 540 ntAPPRIS P1 BASIC16.41■□□□□ 0.22
TRIM47Q96LD4 AC012183.1-201ENST00000625197 499 ntBASIC16.41■□□□□ 0.22
TRIM47Q96LD4 PPM1L-201ENST00000295839 1449 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
TRIM47Q96LD4 SLC38A4-201ENST00000266579 2728 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
TRIM47Q96LD4 AL591122.2-201ENST00000624125 1853 ntBASIC16.41■□□□□ 0.22
TRIM47Q96LD4 NKIRAS2-201ENST00000307641 2948 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
TRIM47Q96LD4 NARFL-202ENST00000540986 3212 ntTSL 2 BASIC16.41■□□□□ 0.22
TRIM47Q96LD4 TSPAN3-205ENST00000558745 1340 ntTSL 5 BASIC16.41■□□□□ 0.22
TRIM47Q96LD4 UQCC2-204ENST00000607484 1314 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
TRIM47Q96LD4 OPRM1-201ENST00000229768 1465 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
TRIM47Q96LD4 SCAMP1-AS1-201ENST00000421004 1479 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
TRIM47Q96LD4 OPRM1-207ENST00000428397 1481 ntAPPRIS P3 TSL 1 (best) BASIC16.41■□□□□ 0.22
TRIM47Q96LD4 BOLL-203ENST00000392296 2838 ntAPPRIS ALT2 TSL 1 (best) BASIC16.41■□□□□ 0.22
TRIM47Q96LD4 DSEL-201ENST00000310045 9531 ntAPPRIS P1 TSL 2 BASIC16.41■□□□□ 0.22
TRIM47Q96LD4 AC138028.2-202ENST00000567968 4528 ntTSL 2 BASIC16.4■□□□□ 0.22
TRIM47Q96LD4 TMEM143-201ENST00000293261 2560 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
TRIM47Q96LD4 HGNC:18790-203ENST00000433139 2254 ntAPPRIS P1 TSL 2 BASIC16.4■□□□□ 0.22
TRIM47Q96LD4 UPK1A-203ENST00000616789 1366 ntTSL 5 BASIC16.4■□□□□ 0.22
TRIM47Q96LD4 CEP76-201ENST00000262127 2939 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
TRIM47Q96LD4 TIGD1-201ENST00000408957 2625 ntAPPRIS P1 BASIC16.4■□□□□ 0.22
TRIM47Q96LD4 MAP2K1-201ENST00000307102 3410 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
TRIM47Q96LD4 DRC3-203ENST00000399187 2008 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
TRIM47Q96LD4 LAP3-210ENST00000606142 1876 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
TRIM47Q96LD4 GTF3C2-214ENST00000622534 1858 ntTSL 5 BASIC16.4■□□□□ 0.22
TRIM47Q96LD4 CXorf36-201ENST00000377934 2513 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
TRIM47Q96LD4 LINC01138-206ENST00000622328 2212 ntTSL 2 BASIC16.4■□□□□ 0.22
TRIM47Q96LD4 AC148477.2-201ENST00000537762 3039 ntTSL 3 BASIC16.4■□□□□ 0.22
TRIM47Q96LD4 CUTA-203ENST00000374500 937 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
TRIM47Q96LD4 APOA1-203ENST00000375320 940 ntAPPRIS P1 TSL 3 BASIC16.4■□□□□ 0.22
TRIM47Q96LD4 LINC01022-201ENST00000415652 394 ntTSL 3 BASIC16.4■□□□□ 0.22
TRIM47Q96LD4 LINC01523-201ENST00000425385 450 ntTSL 2 BASIC16.4■□□□□ 0.22
TRIM47Q96LD4 RLN3-201ENST00000431365 580 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
TRIM47Q96LD4 APCDD1L-AS1-206ENST00000445984 566 ntTSL 3 BASIC16.4■□□□□ 0.22
Retrieved 100 of 98,524 protein–RNA pairs in 49.7 ms