Protein–RNA interactions for Protein: Q08174

PCDH1, Protocadherin-1, humanhuman

Predictions only

Length 1,060 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH1Q08174 SLC39A11-202ENST00000542342 2752 ntAPPRIS ALT1 TSL 2 BASIC13.57□□□□□ -0.24
PCDH1Q08174 IL12RB1-203ENST00000593993 2782 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
PCDH1Q08174 ARPC1A-201ENST00000262942 1565 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
PCDH1Q08174 CREB3L4-204ENST00000368603 1557 ntAPPRIS P3 TSL 1 (best) BASIC13.57□□□□□ -0.24
PCDH1Q08174 DRD3-203ENST00000460779 1557 ntAPPRIS P3 TSL 2 BASIC13.57□□□□□ -0.24
PCDH1Q08174 SEMA6D-208ENST00000558014 6028 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
PCDH1Q08174 RPS6KC1-206ENST00000543354 4082 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
PCDH1Q08174 THBS2-201ENST00000366787 5811 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
PCDH1Q08174 PPFIA4-202ENST00000295706 6395 ntAPPRIS ALT2 TSL 5 BASIC13.57□□□□□ -0.24
PCDH1Q08174 LINC01662-201ENST00000342888 1859 ntTSL 2 BASIC13.57□□□□□ -0.24
PCDH1Q08174 DCAF13-209ENST00000616836 2639 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
PCDH1Q08174 CA12-201ENST00000178638 6413 ntAPPRIS P4 TSL 1 (best) BASIC13.57□□□□□ -0.24
PCDH1Q08174 YIPF6-204ENST00000462683 6741 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
PCDH1Q08174 KDM8-212ENST00000568965 1655 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
PCDH1Q08174 CCDC117-202ENST00000421503 3766 ntTSL 2 BASIC13.56□□□□□ -0.24
PCDH1Q08174 EPB42-210ENST00000622454 2227 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
PCDH1Q08174 AL139193.2-201ENST00000553712 1954 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
PCDH1Q08174 FAM230C-201ENST00000623511 1970 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
PCDH1Q08174 RNASEH2C-201ENST00000308418 2794 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
PCDH1Q08174 MECP2-217ENST00000628176 1712 ntTSL 3 BASIC13.56□□□□□ -0.24
PCDH1Q08174 OFD1-204ENST00000398395 3307 ntAPPRIS ALT2 TSL 5 BASIC13.56□□□□□ -0.24
PCDH1Q08174 CX3CL1-204ENST00000565912 5796 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
PCDH1Q08174 AC067931.2-201ENST00000623655 2003 ntBASIC13.56□□□□□ -0.24
PCDH1Q08174 RNF14-201ENST00000347642 4213 ntAPPRIS P1 TSL 2 BASIC13.56□□□□□ -0.24
PCDH1Q08174 STAB1-201ENST00000321725 7928 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
PCDH1Q08174 FUBP1-203ENST00000370768 2378 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
PCDH1Q08174 ARF5-201ENST00000000233 1103 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
PCDH1Q08174 FAM86MP-201ENST00000340703 885 ntBASIC13.56□□□□□ -0.24
PCDH1Q08174 AL357558.1-201ENST00000416646 456 ntTSL 2 BASIC13.56□□□□□ -0.24
PCDH1Q08174 AL596276.2-201ENST00000447525 331 ntBASIC13.56□□□□□ -0.24
PCDH1Q08174 SEPT7P2-209ENST00000450436 601 ntTSL 4 BASIC13.56□□□□□ -0.24
PCDH1Q08174 TSPEAR-AS1-202ENST00000451035 2108 ntTSL 5 BASIC13.56□□□□□ -0.24
PCDH1Q08174 BX284668.4-201ENST00000453917 508 ntBASIC13.56□□□□□ -0.24
PCDH1Q08174 AP002748.3-205ENST00000525142 567 ntTSL 3 BASIC13.56□□□□□ -0.24
PCDH1Q08174 AP002748.3-203ENST00000533502 581 ntTSL 3 BASIC13.56□□□□□ -0.24
PCDH1Q08174 TPO-215ENST00000539820 1157 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
PCDH1Q08174 CHRNA5-203ENST00000559554 1051 ntTSL 3 BASIC13.56□□□□□ -0.24
PCDH1Q08174 DBNDD1-206ENST00000568838 993 ntTSL 2 BASIC13.56□□□□□ -0.24
PCDH1Q08174 GPRC5B-209ENST00000569479 2984 ntAPPRIS P2 TSL 5 BASIC13.56□□□□□ -0.24
PCDH1Q08174 CRYBG1-201ENST00000369066 7553 ntAPPRIS P2 TSL 1 (best) BASIC13.56□□□□□ -0.24
PCDH1Q08174 AP4M1-204ENST00000421755 1572 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
PCDH1Q08174 WWTR1-203ENST00000465804 5030 ntAPPRIS P1 TSL 2 BASIC13.56□□□□□ -0.24
PCDH1Q08174 ADAM17-203ENST00000497134 1873 ntTSL 5 BASIC13.56□□□□□ -0.24
PCDH1Q08174 ADAM17-204ENST00000618923 1881 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
PCDH1Q08174 C19orf57-204ENST00000586783 2454 ntAPPRIS ALT2 TSL 5 BASIC13.56□□□□□ -0.24
PCDH1Q08174 LBHD1-201ENST00000354588 1320 ntAPPRIS P2 TSL 1 (best) BASIC13.56□□□□□ -0.24
PCDH1Q08174 NME1-209ENST00000511355 1645 ntTSL 5 BASIC13.56□□□□□ -0.24
PCDH1Q08174 EPHA5-204ENST00000511294 5176 ntAPPRIS ALT2 TSL 1 (best) BASIC13.56□□□□□ -0.24
PCDH1Q08174 TTLL4-212ENST00000457313 3723 ntTSL 2 BASIC13.56□□□□□ -0.24
PCDH1Q08174 AFAP1-203ENST00000382543 2590 ntAPPRIS ALT1 TSL 5 BASIC13.56□□□□□ -0.24
PCDH1Q08174 NCF4-201ENST00000248899 1396 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
PCDH1Q08174 FOXO4-201ENST00000341558 1353 ntTSL 5 BASIC13.56□□□□□ -0.24
PCDH1Q08174 BRMS1-202ENST00000425825 1363 ntTSL 5 BASIC13.56□□□□□ -0.24
PCDH1Q08174 ZNF333-209ENST00000601134 1392 ntTSL 5 BASIC13.56□□□□□ -0.24
PCDH1Q08174 SMC5-201ENST00000361138 5980 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
PCDH1Q08174 FRMD8-202ENST00000355991 3514 ntTSL 2 BASIC13.56□□□□□ -0.24
PCDH1Q08174 NUP160-201ENST00000378460 5376 ntAPPRIS P2 TSL 1 (best) BASIC13.56□□□□□ -0.24
PCDH1Q08174 LBH-201ENST00000395323 2933 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
PCDH1Q08174 FLNC-201ENST00000325888 9188 ntAPPRIS P3 TSL 1 (best) BASIC13.56□□□□□ -0.24
PCDH1Q08174 NRG1-201ENST00000287842 2035 ntAPPRIS P4 TSL 1 (best) BASIC13.56□□□□□ -0.24
PCDH1Q08174 CCT2-201ENST00000299300 2041 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
PCDH1Q08174 CFAP43-201ENST00000278064 2963 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
PCDH1Q08174 AC108024.1-201ENST00000626286 1721 ntBASIC13.56□□□□□ -0.24
PCDH1Q08174 PIP5K1B-208ENST00000541509 2664 ntTSL 2 BASIC13.56□□□□□ -0.24
PCDH1Q08174 WASHC2C-210ENST00000623400 4616 ntAPPRIS ALT2 TSL 1 (best) BASIC13.56□□□□□ -0.24
PCDH1Q08174 HERPUD1-203ENST00000379792 1782 ntTSL 5 BASIC13.55□□□□□ -0.24
PCDH1Q08174 KIF17-203ENST00000400463 3731 ntAPPRIS ALT2 TSL 1 (best) BASIC13.55□□□□□ -0.24
PCDH1Q08174 EPHB4-210ENST00000616502 3737 ntTSL 5 BASIC13.55□□□□□ -0.24
PCDH1Q08174 TNS2-219ENST00000552570 4714 ntAPPRIS ALT2 TSL 5 BASIC13.55□□□□□ -0.24
PCDH1Q08174 FARP2-201ENST00000264042 4051 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
PCDH1Q08174 AC004554.1-201ENST00000422830 1468 ntBASIC13.55□□□□□ -0.24
PCDH1Q08174 LRSAM1-203ENST00000373322 2849 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
PCDH1Q08174 GOSR2-235ENST00000640269 2190 ntTSL 5 BASIC13.55□□□□□ -0.24
PCDH1Q08174 CEP131-202ENST00000374782 3505 ntAPPRIS P3 TSL 5 BASIC13.55□□□□□ -0.24
PCDH1Q08174 LDHAL6A-201ENST00000280706 2526 ntAPPRIS P1 TSL 2 BASIC13.55□□□□□ -0.24
PCDH1Q08174 PLEKHG6-201ENST00000011684 2881 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
PCDH1Q08174 RABEPK-206ENST00000628863 1537 ntTSL 5 BASIC13.55□□□□□ -0.24
PCDH1Q08174 SARS-202ENST00000369923 1882 ntTSL 5 BASIC13.55□□□□□ -0.24
PCDH1Q08174 SLC43A3-214ENST00000529554 2207 ntAPPRIS P3 TSL 2 BASIC13.55□□□□□ -0.24
PCDH1Q08174 IZUMO1-201ENST00000332955 1621 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
PCDH1Q08174 CCDC88B-201ENST00000301897 870 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
PCDH1Q08174 VSIG2-201ENST00000326621 1148 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
PCDH1Q08174 MT1H-201ENST00000332374 397 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
PCDH1Q08174 BCL2L11-202ENST00000337565 720 ntTSL 5 BASIC13.55□□□□□ -0.24
PCDH1Q08174 RAB36-202ENST00000341989 936 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
PCDH1Q08174 CRYBA4-201ENST00000354760 811 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
PCDH1Q08174 LINC00265-2P-201ENST00000413372 782 ntBASIC13.55□□□□□ -0.24
PCDH1Q08174 AC016730.1-201ENST00000420828 832 ntTSL 2 BASIC13.55□□□□□ -0.24
PCDH1Q08174 AF274855.1-203ENST00000424126 800 ntTSL 3 BASIC13.55□□□□□ -0.24
PCDH1Q08174 AC136604.1-202ENST00000425471 771 ntBASIC13.55□□□□□ -0.24
PCDH1Q08174 PSMB8-AS1-204ENST00000429600 996 ntTSL 2 BASIC13.55□□□□□ -0.24
PCDH1Q08174 FGF13-204ENST00000436198 1165 ntTSL 2 BASIC13.55□□□□□ -0.24
PCDH1Q08174 ALKBH2-203ENST00000440112 574 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
PCDH1Q08174 LINC02380-201ENST00000510956 1038 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
PCDH1Q08174 MEG3_2.1-201ENST00000611456 105 ntBASIC13.55□□□□□ -0.24
PCDH1Q08174 RBM8A-206ENST00000632555 751 ntAPPRIS P1 TSL 3 BASIC13.55□□□□□ -0.24
PCDH1Q08174 FAM86C1-201ENST00000346333 2010 ntAPPRIS P3 TSL 1 (best) BASIC13.55□□□□□ -0.24
PCDH1Q08174 RNF214-201ENST00000300650 2755 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
PCDH1Q08174 TRIB2-202ENST00000381465 2778 ntTSL 2 BASIC13.55□□□□□ -0.24
PCDH1Q08174 AL157791.1-201ENST00000553667 1699 ntBASIC13.55□□□□□ -0.24
Retrieved 100 of 98,524 protein–RNA pairs in 34.5 ms