Protein–RNA interactions for Protein: P84243

H3F3A, Histone H3.3, humanhuman

Predictions only

Length 136 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
H3F3AP84243 FAM163B-201ENST00000356873 1131 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
H3F3AP84243 VAMP4-202ENST00000367740 1193 ntAPPRIS ALT1 TSL 1 (best) BASIC12.56□□□□□ -0.4
H3F3AP84243 DPCD-202ENST00000370151 858 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
H3F3AP84243 TCEA3-201ENST00000374601 1197 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
H3F3AP84243 C6orf136-202ENST00000376471 614 ntTSL 3 BASIC12.56□□□□□ -0.4
H3F3AP84243 AL583805.1-201ENST00000391389 531 ntBASIC12.56□□□□□ -0.4
H3F3AP84243 NME6-203ENST00000415644 849 ntTSL 2 BASIC12.56□□□□□ -0.4
H3F3AP84243 BCYRN1-201ENST00000418539 200 ntBASIC12.56□□□□□ -0.4
H3F3AP84243 FLJ37035-201ENST00000419400 446 ntTSL 3 BASIC12.56□□□□□ -0.4
H3F3AP84243 AC007274.2-201ENST00000421675 662 ntBASIC12.56□□□□□ -0.4
H3F3AP84243 DNAJB1P1-201ENST00000429417 1024 ntBASIC12.56□□□□□ -0.4
H3F3AP84243 ALKBH2-203ENST00000440112 574 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
H3F3AP84243 RN7SL720P-201ENST00000488178 304 ntBASIC12.56□□□□□ -0.4
H3F3AP84243 AC011921.1-201ENST00000559739 557 ntTSL 4 BASIC12.56□□□□□ -0.4
H3F3AP84243 AC104758.2-201ENST00000562716 483 ntTSL 3 BASIC12.56□□□□□ -0.4
H3F3AP84243 TMEM205-210ENST00000588560 840 ntAPPRIS P1 TSL 2 BASIC12.56□□□□□ -0.4
H3F3AP84243 NEAT1-203ENST00000601801 487 ntTSL 4 BASIC12.56□□□□□ -0.4
H3F3AP84243 AC012044.1-201ENST00000603431 297 ntBASIC12.56□□□□□ -0.4
H3F3AP84243 AL139424.3-202ENST00000641619 917 ntBASIC12.56□□□□□ -0.4
H3F3AP84243 GPN3-201ENST00000228827 1468 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
H3F3AP84243 LINC01873-201ENST00000428647 1679 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
H3F3AP84243 LINC01535-206ENST00000592712 1699 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
H3F3AP84243 S100PBP-203ENST00000373476 3320 ntAPPRIS P1 TSL 2 BASIC12.56□□□□□ -0.4
H3F3AP84243 MRPS10-201ENST00000053468 2110 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
H3F3AP84243 PCDHA5-201ENST00000529619 4157 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
H3F3AP84243 UBXN11-207ENST00000374223 1312 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
H3F3AP84243 PCBP1-AS1-214ENST00000419542 1309 ntTSL 5 BASIC12.56□□□□□ -0.4
H3F3AP84243 AC011287.1-201ENST00000639998 1349 ntTSL 5 BASIC12.56□□□□□ -0.4
H3F3AP84243 APP-205ENST00000358918 2366 ntTSL 5 BASIC12.56□□□□□ -0.4
H3F3AP84243 FAM90A12P-201ENST00000519497 2375 ntBASIC12.56□□□□□ -0.4
H3F3AP84243 FAM90A24P-201ENST00000520792 2369 ntBASIC12.56□□□□□ -0.4
H3F3AP84243 POM121-205ENST00000627934 5480 ntAPPRIS P3 TSL 5 BASIC12.56□□□□□ -0.4
H3F3AP84243 ISLR-202ENST00000395118 2175 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
H3F3AP84243 PLIN3-207ENST00000592528 2154 ntTSL 2 BASIC12.56□□□□□ -0.4
H3F3AP84243 AL117190.1-201ENST00000637474 1985 ntTSL 5 BASIC12.56□□□□□ -0.4
H3F3AP84243 AJUBA-201ENST00000262713 4262 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
H3F3AP84243 MCC-202ENST00000408903 3476 ntAPPRIS P1 TSL 2 BASIC12.56□□□□□ -0.4
H3F3AP84243 PDE8A-203ENST00000394553 3912 ntAPPRIS P4 TSL 1 (best) BASIC12.56□□□□□ -0.4
H3F3AP84243 TMEM145-203ENST00000598766 2011 ntAPPRIS ALT2 TSL 5 BASIC12.55□□□□□ -0.4
H3F3AP84243 TAGLN2-203ENST00000368097 1604 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
H3F3AP84243 NXPH1-201ENST00000405863 2921 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
H3F3AP84243 CNBP-203ENST00000446936 1623 ntAPPRIS ALT1 TSL 1 (best) BASIC12.55□□□□□ -0.4
H3F3AP84243 CNBP-204ENST00000451728 1641 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
H3F3AP84243 ZNF135-205ENST00000511556 2253 ntAPPRIS P3 TSL 2 BASIC12.55□□□□□ -0.4
H3F3AP84243 CTSS-202ENST00000448301 1421 ntTSL 2 BASIC12.55□□□□□ -0.4
H3F3AP84243 RGS8-204ENST00000483095 1432 ntAPPRIS P1 TSL 2 BASIC12.55□□□□□ -0.4
H3F3AP84243 FAM171B-201ENST00000304698 5826 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
H3F3AP84243 SPECC1-202ENST00000395522 2982 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
H3F3AP84243 GLP2R-204ENST00000574745 1882 ntTSL 2 BASIC12.55□□□□□ -0.4
H3F3AP84243 AMER2-201ENST00000357816 10055 ntTSL 2 BASIC12.55□□□□□ -0.4
H3F3AP84243 SALL4P6-201ENST00000429385 1691 ntBASIC12.55□□□□□ -0.4
H3F3AP84243 AC093462.1-201ENST00000621167 1683 ntBASIC12.55□□□□□ -0.4
H3F3AP84243 VAC14-AS1-201ENST00000398177 2145 ntTSL 2 BASIC12.55□□□□□ -0.4
H3F3AP84243 B3GNT7-201ENST00000287590 3706 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
H3F3AP84243 UBA5-202ENST00000356232 3705 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
H3F3AP84243 RIOK1-202ENST00000379834 2810 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
H3F3AP84243 UBBP4-202ENST00000584755 1459 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
H3F3AP84243 CRTC1-202ENST00000338797 6929 ntAPPRIS ALT1 TSL 1 (best) BASIC12.55□□□□□ -0.4
H3F3AP84243 CUL1-201ENST00000325222 3064 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
H3F3AP84243 WSCD2-206ENST00000547525 4481 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
H3F3AP84243 IL3RA-201ENST00000331035 1706 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
H3F3AP84243 MARK4-201ENST00000262891 3573 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
H3F3AP84243 LINC01114-203ENST00000425879 2434 ntTSL 2 BASIC12.55□□□□□ -0.4
H3F3AP84243 FERD3L-201ENST00000275461 640 ntAPPRIS P1 BASIC12.55□□□□□ -0.4
H3F3AP84243 ACSL1-201ENST00000281455 3832 ntAPPRIS P3 TSL 1 (best) BASIC12.55□□□□□ -0.4
H3F3AP84243 CST5-201ENST00000304710 756 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
H3F3AP84243 TCEAL6-201ENST00000372773 983 ntAPPRIS P1 TSL 3 BASIC12.55□□□□□ -0.4
H3F3AP84243 TRBJ2-6-201ENST00000390418 53 ntAPPRIS P1 BASIC12.55□□□□□ -0.4
H3F3AP84243 PCBP3-201ENST00000400304 1086 ntAPPRIS ALT2 TSL 1 (best) BASIC12.55□□□□□ -0.4
H3F3AP84243 PCBP3-208ENST00000449640 1278 ntAPPRIS ALT2 TSL 5 BASIC12.55□□□□□ -0.4
H3F3AP84243 FTH1P22-201ENST00000456305 520 ntBASIC12.55□□□□□ -0.4
H3F3AP84243 RPL18AP8-201ENST00000486071 528 ntBASIC12.55□□□□□ -0.4
H3F3AP84243 GATD1-205ENST00000524550 995 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
H3F3AP84243 CATSPERZ-203ENST00000539943 917 ntAPPRIS ALT2 TSL 2 BASIC12.55□□□□□ -0.4
H3F3AP84243 LTBR-209ENST00000541102 1084 ntTSL 5 BASIC12.55□□□□□ -0.4
H3F3AP84243 AC133919.1-201ENST00000562203 416 ntTSL 3 BASIC12.55□□□□□ -0.4
H3F3AP84243 AC107871.2-202ENST00000563057 396 ntTSL 2 BASIC12.55□□□□□ -0.4
H3F3AP84243 SHROOM1-208ENST00000617339 3638 ntAPPRIS ALT2 TSL 5 BASIC12.55□□□□□ -0.4
H3F3AP84243 TMEM40-205ENST00000435575 1785 ntAPPRIS ALT2 TSL 2 BASIC12.55□□□□□ -0.4
H3F3AP84243 MINDY4-201ENST00000265299 2733 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
H3F3AP84243 KIAA1217-203ENST00000376452 6052 ntAPPRIS ALT2 TSL 1 (best) BASIC12.55□□□□□ -0.4
H3F3AP84243 LMAN2L-202ENST00000377079 2020 ntAPPRIS ALT2 TSL 1 (best) BASIC12.55□□□□□ -0.4
H3F3AP84243 SEMA3F-202ENST00000413852 3212 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
H3F3AP84243 KIFC3-204ENST00000465878 3225 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
H3F3AP84243 AC104667.2-202ENST00000452801 1301 ntTSL 2 BASIC12.55□□□□□ -0.4
H3F3AP84243 CRMP1-205ENST00000512574 2764 ntTSL 2 BASIC12.55□□□□□ -0.4
H3F3AP84243 USP19-208ENST00000453664 4719 ntAPPRIS ALT2 TSL 2 BASIC12.55□□□□□ -0.4
H3F3AP84243 AC008429.1-202ENST00000518818 2067 ntTSL 2 BASIC12.55□□□□□ -0.4
H3F3AP84243 GNB1L-201ENST00000329517 6706 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
H3F3AP84243 ACTN1-205ENST00000538545 2813 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
H3F3AP84243 SELENON-202ENST00000361547 4334 ntAPPRIS P4 TSL 1 (best) BASIC12.55□□□□□ -0.4
H3F3AP84243 DLGAP4-202ENST00000340491 2392 ntAPPRIS ALT2 TSL 1 (best) BASIC12.55□□□□□ -0.4
H3F3AP84243 SLC6A9-207ENST00000475075 1881 ntTSL 2 BASIC12.55□□□□□ -0.4
H3F3AP84243 PATL2-208ENST00000560780 1863 ntAPPRIS ALT2 TSL 2 BASIC12.55□□□□□ -0.4
H3F3AP84243 DISC1-222ENST00000622252 6927 ntAPPRIS ALT2 TSL 5 BASIC12.55□□□□□ -0.4
H3F3AP84243 RILPL1-202ENST00000376874 3932 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
H3F3AP84243 KDR-201ENST00000263923 5831 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
H3F3AP84243 EDEM3-201ENST00000318130 6898 ntAPPRIS P2 TSL 1 (best) BASIC12.54□□□□□ -0.4
H3F3AP84243 GGT5-202ENST00000327365 2494 ntAPPRIS P3 TSL 1 (best) BASIC12.54□□□□□ -0.4
H3F3AP84243 NCLP1-201ENST00000445357 1963 ntBASIC12.54□□□□□ -0.4
Retrieved 100 of 98,524 protein–RNA pairs in 50.5 ms