Protein–RNA interactions for Protein: P23560

BDNF, Brain-derived neurotrophic factor, humanhuman

Predictions only

Length 247 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BDNFP23560 AP003419.4-201ENST00000616071 517 ntBASIC14.78□□□□□ -0.04
BDNFP23560 UBAP1-202ENST00000359544 2535 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
BDNFP23560 ELAVL2-201ENST00000223951 3763 ntAPPRIS ALT1 TSL 1 (best) BASIC14.78□□□□□ -0.04
BDNFP23560 AMIGO2-201ENST00000266581 3763 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
BDNFP23560 IL17RD-201ENST00000296318 8720 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
BDNFP23560 SUOX-201ENST00000266971 2364 ntAPPRIS P1 TSL 2 BASIC14.78□□□□□ -0.04
BDNFP23560 SUOX-208ENST00000548274 2352 ntAPPRIS P1 TSL 5 BASIC14.78□□□□□ -0.04
BDNFP23560 MPPED2-202ENST00000448418 5591 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
BDNFP23560 UMODL1-AS1-201ENST00000329015 2141 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
BDNFP23560 HDAC2-206ENST00000519108 2000 ntTSL 2 BASIC14.78□□□□□ -0.04
BDNFP23560 KIAA0319-201ENST00000378214 6802 ntAPPRIS P3 TSL 1 (best) BASIC14.78□□□□□ -0.04
BDNFP23560 CNTNAP3P2-201ENST00000617175 3861 ntBASIC14.78□□□□□ -0.04
BDNFP23560 ADAT1-201ENST00000307921 1869 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
BDNFP23560 MED12L-203ENST00000422248 2757 ntAPPRIS ALT2 TSL 2 BASIC14.78□□□□□ -0.04
BDNFP23560 BUB1B-PAK6-201ENST00000441369 2767 ntAPPRIS P1 TSL 2 BASIC14.78□□□□□ -0.04
BDNFP23560 ZSCAN32-215ENST00000618425 2788 ntTSL 2 BASIC14.78□□□□□ -0.04
BDNFP23560 GOLGA8UP-201ENST00000527159 1755 ntBASIC14.78□□□□□ -0.04
BDNFP23560 KDM2B-201ENST00000377069 5224 ntAPPRIS ALT2 TSL 2 BASIC14.78□□□□□ -0.04
BDNFP23560 COQ7-209ENST00000569127 2575 ntTSL 2 BASIC14.78□□□□□ -0.04
BDNFP23560 IL9RP3-201ENST00000442856 1674 ntBASIC14.77□□□□□ -0.04
BDNFP23560 FGFR3-201ENST00000260795 4132 ntAPPRIS P3 TSL 1 (best) BASIC14.77□□□□□ -0.04
BDNFP23560 PLEKHD1-201ENST00000322564 4865 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
BDNFP23560 ELOA2-202ENST00000620522 1641 ntAPPRIS ALT2 TSL 5 BASIC14.77□□□□□ -0.04
BDNFP23560 AGAP10P-201ENST00000454844 2418 ntBASIC14.77□□□□□ -0.04
BDNFP23560 SLC25A20-202ENST00000430379 1576 ntTSL 3 BASIC14.77□□□□□ -0.04
BDNFP23560 KRT8P24-201ENST00000560290 1559 ntBASIC14.77□□□□□ -0.04
BDNFP23560 ABCA7-201ENST00000263094 6816 ntAPPRIS P2 TSL 5 BASIC14.77□□□□□ -0.04
BDNFP23560 MSI1-201ENST00000257552 2975 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
BDNFP23560 COL8A2-201ENST00000303143 4447 ntAPPRIS P1 TSL 2 BASIC14.77□□□□□ -0.04
BDNFP23560 ERCC1-208ENST00000589165 1453 ntAPPRIS P1 TSL 5 BASIC14.77□□□□□ -0.04
BDNFP23560 TARBP2-202ENST00000394357 1402 ntTSL 3 BASIC14.77□□□□□ -0.04
BDNFP23560 TDP2-201ENST00000341060 2120 ntAPPRIS ALT2 TSL 1 (best) BASIC14.77□□□□□ -0.04
BDNFP23560 FBXL4-201ENST00000229971 2810 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
BDNFP23560 AL357054.3-201ENST00000607084 2055 ntTSL 5 BASIC14.77□□□□□ -0.04
BDNFP23560 ME2-201ENST00000321341 9415 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
BDNFP23560 IL9-201ENST00000274520 591 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
BDNFP23560 PPA2-204ENST00000354147 667 ntTSL 1 (best) BASIC14.77□□□□□ -0.05
BDNFP23560 RAB25-201ENST00000361084 1110 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
BDNFP23560 SPIN2B-203ENST00000374910 725 ntTSL 3 BASIC14.77□□□□□ -0.05
BDNFP23560 RPL17P11-201ENST00000417593 544 ntBASIC14.77□□□□□ -0.05
BDNFP23560 MPC1L-201ENST00000423387 571 ntAPPRIS P1 BASIC14.77□□□□□ -0.05
BDNFP23560 PPA2-205ENST00000432483 859 ntTSL 1 (best) BASIC14.77□□□□□ -0.05
BDNFP23560 SPRY4-AS1-203ENST00000443800 566 ntTSL 3 BASIC14.77□□□□□ -0.05
BDNFP23560 AC091390.4-201ENST00000484974 491 ntTSL 3 BASIC14.77□□□□□ -0.05
BDNFP23560 CD81-209ENST00000492627 886 ntTSL 3 BASIC14.77□□□□□ -0.05
BDNFP23560 RNA5SP406-201ENST00000516106 112 ntBASIC14.77□□□□□ -0.05
BDNFP23560 NKX3-1-202ENST00000523261 713 ntAPPRIS ALT2 TSL 1 (best) BASIC14.77□□□□□ -0.05
BDNFP23560 AP003398.1-201ENST00000531124 318 ntBASIC14.77□□□□□ -0.05
BDNFP23560 FAM227B-210ENST00000560246 911 ntAPPRIS ALT2 TSL 3 BASIC14.77□□□□□ -0.05
BDNFP23560 AC140113.1-201ENST00000603467 169 ntBASIC14.77□□□□□ -0.05
BDNFP23560 AL359091.4-201ENST00000610052 409 ntBASIC14.77□□□□□ -0.05
BDNFP23560 WT1-AS_6.1-201ENST00000614919 121 ntBASIC14.77□□□□□ -0.05
BDNFP23560 MIR6858-201ENST00000620733 67 ntBASIC14.77□□□□□ -0.05
BDNFP23560 RPS10-207ENST00000621356 784 ntAPPRIS P1 TSL 2 BASIC14.77□□□□□ -0.05
BDNFP23560 AL161773.1-201ENST00000624845 863 ntBASIC14.77□□□□□ -0.05
BDNFP23560 LINC00244-201ENST00000625073 613 ntBASIC14.77□□□□□ -0.05
BDNFP23560 GFI1B-207ENST00000636137 1870 ntTSL 5 BASIC14.77□□□□□ -0.05
BDNFP23560 TTLL4-212ENST00000457313 3723 ntTSL 2 BASIC14.77□□□□□ -0.05
BDNFP23560 ASH2L-201ENST00000343823 3090 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
BDNFP23560 POTEM-201ENST00000547889 1817 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
BDNFP23560 GOLGA2-212ENST00000609374 2973 ntTSL 1 (best) BASIC14.77□□□□□ -0.05
BDNFP23560 ZSCAN2-202ENST00000327179 2390 ntAPPRIS ALT1 TSL 1 (best) BASIC14.77□□□□□ -0.05
BDNFP23560 WNT3A-201ENST00000284523 2932 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
BDNFP23560 ZMIZ1-AS1-203ENST00000456353 2878 ntTSL 2 BASIC14.77□□□□□ -0.05
BDNFP23560 PRSS30P-203ENST00000476276 2855 ntTSL 2 BASIC14.77□□□□□ -0.05
BDNFP23560 ATP8B3-201ENST00000310127 5095 ntAPPRIS P3 TSL 1 (best) BASIC14.77□□□□□ -0.05
BDNFP23560 PAPSS2-201ENST00000361175 3949 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
BDNFP23560 TRIM67-202ENST00000444294 9320 ntAPPRIS ALT1 TSL 5 BASIC14.77□□□□□ -0.05
BDNFP23560 SMARCA4-204ENST00000444061 4938 ntAPPRIS ALT1 TSL 5 BASIC14.77□□□□□ -0.05
BDNFP23560 SEPT7-201ENST00000350320 4350 ntAPPRIS P5 TSL 5 BASIC14.77□□□□□ -0.05
BDNFP23560 GJB1-201ENST00000361726 1637 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
BDNFP23560 CNBP-203ENST00000446936 1623 ntAPPRIS ALT1 TSL 1 (best) BASIC14.77□□□□□ -0.05
BDNFP23560 CNBP-204ENST00000451728 1641 ntTSL 1 (best) BASIC14.77□□□□□ -0.05
BDNFP23560 ADCY6-201ENST00000307885 6464 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
BDNFP23560 PRPH-201ENST00000257860 3245 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
BDNFP23560 NDFIP2-205ENST00000612570 4648 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
BDNFP23560 ABCG1-203ENST00000361802 3034 ntAPPRIS P3 TSL 1 (best) BASIC14.76□□□□□ -0.05
BDNFP23560 RBPMS-201ENST00000287771 2974 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
BDNFP23560 CKMT2-203ENST00000437669 1479 ntAPPRIS P1 TSL 5 BASIC14.76□□□□□ -0.05
BDNFP23560 MARVELD3-201ENST00000268485 2912 ntAPPRIS P3 TSL 1 (best) BASIC14.76□□□□□ -0.05
BDNFP23560 DNAJB5-204ENST00000454002 2818 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
BDNFP23560 TMEM200C-202ENST00000581347 10638 ntAPPRIS P1 TSL 5 BASIC14.76□□□□□ -0.05
BDNFP23560 FOXL1-201ENST00000320241 3655 ntAPPRIS P1 BASIC14.76□□□□□ -0.05
BDNFP23560 ZNF333-209ENST00000601134 1392 ntTSL 5 BASIC14.76□□□□□ -0.05
BDNFP23560 IL1RN-201ENST00000259206 1810 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
BDNFP23560 XRCC6-202ENST00000360079 2296 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
BDNFP23560 UBE2V1-224ENST00000625172 2297 ntTSL 4 BASIC14.76□□□□□ -0.05
BDNFP23560 TMEM47-201ENST00000275954 4054 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
BDNFP23560 TNNI1-201ENST00000336092 1750 ntAPPRIS P2 TSL 5 BASIC14.76□□□□□ -0.05
BDNFP23560 UPK3BL1-201ENST00000340457 1342 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
BDNFP23560 C12orf65-204ENST00000429587 1326 ntAPPRIS P2 TSL 2 BASIC14.76□□□□□ -0.05
BDNFP23560 TSPAN3-205ENST00000558745 1340 ntTSL 5 BASIC14.76□□□□□ -0.05
BDNFP23560 FAF1-202ENST00000396153 6817 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
BDNFP23560 SPACA3-201ENST00000269053 817 ntAPPRIS P2 TSL 1 (best) BASIC14.76□□□□□ -0.05
BDNFP23560 MED11-201ENST00000293777 833 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
BDNFP23560 TNNT2-203ENST00000367315 1083 ntAPPRIS ALT2 TSL 5 BASIC14.76□□□□□ -0.05
BDNFP23560 MBD3L4-201ENST00000381394 775 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
BDNFP23560 NME4-203ENST00000397722 1232 ntTSL 2 BASIC14.76□□□□□ -0.05
BDNFP23560 AC112721.1-201ENST00000409162 588 ntTSL 3 BASIC14.76□□□□□ -0.05
BDNFP23560 OR52M2P-201ENST00000414298 959 ntBASIC14.76□□□□□ -0.05
Retrieved 100 of 98,524 protein–RNA pairs in 40.1 ms